Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86810 * 119.99846 * 2 1 4 4 H 1.48497 * 109.47260 * 240.00087 * 3 2 1 5 5 H 1.48501 * 109.46898 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46908 * 119.99900 * 3 2 1 7 7 C 1.38808 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00596 * 170.57250 * 7 2 1 9 9 N 1.36943 * 119.99798 * 350.57550 * 7 2 1 10 10 C 1.48332 * 128.19830 * 164.31305 * 9 7 2 11 11 C 1.54464 * 104.42570 * 138.27004 * 10 9 7 12 12 H 1.08997 * 111.92909 * 263.63422 * 11 10 9 13 13 C 1.54140 * 108.79877 * 139.45054 * 11 10 9 14 14 C 1.54831 * 104.35232 * 224.04693 * 13 11 10 15 15 C 1.54837 * 102.73224 * 38.23063 * 14 13 11 16 16 C 1.55100 * 104.63072 * 25.13199 * 11 10 9 17 17 N 1.46503 * 112.00029 * 237.59630 * 16 11 10 18 18 C 1.34776 * 120.00206 * 180.02562 * 17 16 11 19 19 O 1.21599 * 119.99654 * 0.02562 * 18 17 16 20 20 C 1.47519 * 120.00297 * 179.97438 * 18 17 16 21 21 C 1.46507 * 120.16590 * 0.02562 * 20 18 17 22 22 C 1.35532 * 119.04580 * 179.97438 * 21 20 18 23 23 C 1.41224 * 119.42441 * 0.02562 * 22 21 20 24 24 C 1.37918 * 132.96651 * 180.02562 * 23 22 21 25 25 N 1.33448 * 107.65977 * 179.97438 * 24 23 22 26 26 C 1.30751 * 109.93222 * 359.97438 * 25 24 23 27 27 N 1.35915 * 109.21244 * 0.02562 * 26 25 24 28 28 C 1.36319 * 120.16585 * 179.72334 * 20 18 17 29 29 C 1.48453 * 128.24831 * 344.14674 * 9 7 2 30 30 H 0.96993 * 120.00026 * 359.97438 * 1 2 3 31 31 H 1.09007 * 110.46981 * 19.49949 * 10 9 7 32 32 H 1.09007 * 110.46669 * 257.04141 * 10 9 7 33 33 H 1.08997 * 110.45887 * 342.77235 * 13 11 10 34 34 H 1.09005 * 110.45482 * 105.33194 * 13 11 10 35 35 H 1.08999 * 110.75930 * 156.54101 * 14 13 11 36 36 H 1.09000 * 110.75951 * 279.92142 * 14 13 11 37 37 H 1.08994 * 110.45891 * 80.48499 * 15 14 13 38 38 H 1.08996 * 110.46190 * 202.93008 * 15 14 13 39 39 H 0.97003 * 119.99706 * 0.02562 * 17 16 11 40 40 H 1.08005 * 120.47337 * 0.02562 * 21 20 18 41 41 H 1.07999 * 120.28229 * 180.02562 * 22 21 20 42 42 H 1.08004 * 126.17148 * 0.02562 * 24 23 22 43 43 H 1.08002 * 125.39091 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.75035 * 359.97438 * 28 20 18 45 45 H 1.09003 * 110.34523 * 103.02498 * 29 9 7 46 46 H 1.08996 * 110.60565 * 340.55265 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0794 -1.2083 -0.1537 9 7 1.3395 -2.3801 0.1931 10 6 1.8109 -3.7597 -0.0802 11 6 1.3257 -4.5801 1.1353 12 1 2.1046 -4.6892 1.8899 13 6 0.8103 -5.9455 0.6393 14 6 -0.5092 -6.1640 1.4192 15 6 -1.1236 -4.7432 1.4553 16 6 0.1009 -3.7955 1.6738 17 7 0.2717 -3.4063 3.0758 18 6 -0.6990 -2.7161 3.7067 19 8 -1.7167 -2.4170 3.1122 20 6 -0.5273 -2.3247 5.1186 21 6 0.6972 -2.6838 5.8384 22 6 0.8313 -2.3121 7.1349 23 6 -0.2087 -1.5903 7.7608 24 6 -0.3669 -1.0826 9.0334 25 7 -1.5569 -0.4808 9.0842 26 6 -2.1551 -0.5776 7.9256 27 7 -1.3555 -1.2614 7.0651 28 6 -1.5045 -1.6218 5.7582 29 6 -0.0302 -2.5803 0.7294 30 1 -0.4850 0.8400 0.0004 31 1 2.8986 -3.7847 -0.1471 32 1 1.3647 -4.1399 -0.9992 33 1 0.6183 -5.9135 -0.4332 34 1 1.5272 -6.7319 0.8755 35 1 -1.1632 -6.8543 0.8863 36 1 -0.3067 -6.5231 2.4282 37 1 -1.6231 -4.5200 0.5126 38 1 -1.8223 -4.6512 2.2868 39 1 1.0834 -3.6453 3.5501 40 1 1.4820 -3.2359 5.3428 41 1 1.7257 -2.5659 7.6844 42 1 0.3444 -1.1579 9.8427 43 1 -3.1305 -0.1782 7.6900 44 1 -2.4054 -1.3518 5.2273 45 1 -0.7258 -2.8004 -0.0805 46 1 -0.3577 -1.7006 1.2834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098945166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = 66.697370 kcal Electronic energy + Delta-G solvation = -30055.702367 eV Core-core repulsion = 26139.400900 eV Total energy + Delta-G solvation = -3916.301467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.75157 -41.52429 -39.71196 -37.78293 -36.13580 -35.01263 -34.22290 -33.47029 -32.12483 -30.52857 -29.48949 -29.15098 -26.54849 -26.19291 -25.23375 -23.97633 -22.97528 -22.75803 -21.85121 -20.98990 -20.24269 -19.16893 -18.71725 -18.22788 -17.65424 -17.02400 -16.94727 -16.63443 -16.38879 -16.16904 -15.63231 -15.58375 -15.47663 -15.23413 -15.07507 -14.48911 -14.21476 -13.99613 -13.98287 -13.38477 -13.17761 -13.01897 -12.78317 -12.75229 -12.69813 -12.52023 -12.29538 -11.95821 -11.88468 -11.78767 -11.68346 -11.56740 -11.43074 -11.41304 -11.27498 -10.94121 -10.72112 -10.40142 -9.93223 -8.86026 -8.60920 -7.88367 -5.26140 -0.44863 0.00582 1.37988 1.40900 1.43680 1.50208 1.64131 2.07119 2.24493 2.46056 2.54157 3.29671 3.36037 3.42858 3.57791 3.60399 3.64189 3.76446 3.83026 3.89717 3.91265 4.06495 4.38699 4.41715 4.49387 4.50445 4.54927 4.59978 4.72108 4.76920 4.85977 4.88828 4.96781 5.01676 5.10488 5.11395 5.19018 5.24262 5.33243 5.43210 5.43804 5.47461 5.55290 5.56297 5.67468 5.85207 6.01656 6.22855 6.58187 6.76402 6.99614 7.26273 7.70350 8.50136 9.22682 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.004142 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.168855 B = 6759.045009 C = 8626.886774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.062 4.062 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.301 1.301 6 H -0.277 1.277 7 C -0.234 4.234 8 H 0.084 0.916 9 N -0.620 5.620 10 C 0.122 3.878 11 C -0.095 4.095 12 H 0.102 0.898 13 C -0.107 4.107 14 C -0.110 4.110 15 C -0.116 4.116 16 C 0.155 3.845 17 N -0.681 5.681 18 C 0.562 3.438 19 O -0.569 6.569 20 C -0.155 4.155 21 C -0.109 4.109 22 C -0.067 4.067 23 C -0.016 4.016 24 C -0.024 4.024 25 N -0.481 5.481 26 C 0.146 3.854 27 N -0.382 5.382 28 C 0.117 3.883 29 C 0.166 3.834 30 H 0.244 0.756 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.410 0.590 40 H 0.167 0.833 41 H 0.190 0.810 42 H 0.209 0.791 43 H 0.240 0.760 44 H 0.178 0.822 45 H -0.010 1.010 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.625 -12.983 14.389 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.256 4.256 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.227 1.227 6 H -0.203 1.203 7 C -0.363 4.363 8 H 0.101 0.899 9 N -0.344 5.344 10 C -0.004 4.004 11 C -0.115 4.115 12 H 0.120 0.880 13 C -0.145 4.145 14 C -0.147 4.147 15 C -0.155 4.155 16 C 0.067 3.933 17 N -0.331 5.331 18 C 0.349 3.651 19 O -0.449 6.449 20 C -0.162 4.162 21 C -0.129 4.129 22 C -0.086 4.086 23 C -0.123 4.123 24 C -0.176 4.176 25 N -0.194 5.194 26 C -0.128 4.128 27 N -0.055 5.055 28 C -0.006 4.006 29 C 0.039 3.961 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.248 0.752 40 H 0.184 0.816 41 H 0.207 0.793 42 H 0.226 0.774 43 H 0.256 0.744 44 H 0.195 0.805 45 H 0.008 0.992 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.473 -12.070 14.591 18.993 hybrid contribution 0.352 1.206 -1.140 1.697 sum 1.825 -10.863 13.451 17.386 Atomic orbital electron populations 1.70136 1.06620 1.25250 1.57231 1.25686 0.96185 1.01137 1.02596 0.85289 0.77264 0.79150 0.78501 1.19691 1.22729 1.20252 1.19325 0.91279 0.83605 1.42104 0.89863 1.45425 1.14293 1.01220 1.73421 1.22174 0.98189 0.84791 0.95201 1.22984 0.95816 0.94910 0.97807 0.87986 1.22409 0.97276 0.94955 0.99848 1.22473 0.96518 0.94546 1.01199 1.22919 0.96200 0.95611 1.00804 1.22268 0.96212 0.94564 0.80208 1.45466 1.20231 1.55628 1.11797 1.18005 0.83485 0.77729 0.85852 1.90812 1.30338 1.55742 1.68044 1.20492 0.97170 1.04411 0.94113 1.22309 0.95461 1.00682 0.94437 1.20833 0.97783 0.95729 0.94234 1.20270 0.90128 1.07125 0.94804 1.23102 0.96317 1.02559 0.95617 1.69990 1.08136 1.19743 1.21544 1.25838 1.00456 1.02180 0.84367 1.43085 1.16165 1.37279 1.08934 1.21699 1.00959 0.95605 0.82304 1.21693 0.85772 0.95987 0.92634 0.94718 0.92244 0.95753 0.91721 0.88439 0.90136 0.90068 0.92875 0.92609 0.75182 0.81594 0.79287 0.77447 0.74421 0.80540 0.99228 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.44 10.89 21.65 0.24 -59.21 16 2 C -0.06 -3.60 5.40 84.86 0.46 -3.15 16 3 Si 0.97 46.45 29.56 68.60 2.03 48.48 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.23 -13.03 10.37 84.03 0.87 -12.16 16 8 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16 9 N -0.62 -31.36 3.38 -686.56 -2.32 -33.68 16 10 C 0.12 4.66 6.74 86.52 0.58 5.24 16 11 C -0.09 -2.77 3.67 -9.19 -0.03 -2.81 16 12 H 0.10 2.46 7.74 -2.39 -0.02 2.45 16 13 C -0.11 -2.37 6.36 31.61 0.20 -2.17 16 14 C -0.11 -2.44 6.90 31.85 0.22 -2.22 16 15 C -0.12 -3.76 5.75 32.40 0.19 -3.58 16 16 C 0.16 5.56 0.93 5.99 0.01 5.57 16 17 N -0.68 -21.57 5.26 -415.32 -2.18 -23.75 16 18 C 0.56 19.81 6.91 86.69 0.60 20.41 16 19 O -0.57 -24.98 13.91 -4.03 -0.06 -25.04 16 20 C -0.16 -4.36 5.98 -19.12 -0.11 -4.47 16 21 C -0.11 -2.20 9.73 23.80 0.23 -1.97 16 22 C -0.07 -1.17 10.09 22.38 0.23 -0.95 16 23 C -0.02 -0.36 6.78 38.81 0.26 -0.09 16 24 C -0.02 -0.51 12.00 84.37 1.01 0.50 16 25 N -0.48 -12.07 11.19 -197.50 -2.21 -14.28 16 26 C 0.15 3.35 12.76 179.91 2.30 5.65 16 27 N -0.38 -9.51 2.94 -349.86 -1.03 -10.54 16 28 C 0.12 3.19 10.51 83.54 0.88 4.07 16 29 C 0.17 8.34 4.86 86.50 0.42 8.76 16 30 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.02 0.96 7.21 -2.38 -0.02 0.94 16 33 H 0.06 1.55 7.19 -2.39 -0.02 1.53 16 34 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.93 7.26 -2.39 -0.02 1.91 16 38 H 0.06 1.91 6.83 -2.39 -0.02 1.89 16 39 H 0.41 9.90 6.42 -92.71 -0.59 9.31 16 40 H 0.17 2.39 6.58 -2.91 -0.02 2.37 16 41 H 0.19 1.74 8.06 -2.91 -0.02 1.71 16 42 H 0.21 2.98 8.06 -2.91 -0.02 2.96 16 43 H 0.24 3.72 8.06 -2.91 -0.02 3.69 16 44 H 0.18 4.75 7.56 -2.91 -0.02 4.73 16 45 H -0.01 -0.57 7.24 -2.39 -0.02 -0.59 16 46 H 0.06 3.35 5.16 -2.39 -0.01 3.34 16 Total: -1.00 -80.66 366.28 3.20 -77.46 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.43 Total: 23.92 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 8.30 Total: 16.64 kcal Atomic # 7 Polarization: -133.95 SS G_CDS: -7.51 Total: -141.46 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.06 Total: -25.04 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -80.66 3.20 -77.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098945166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.159 kcal (2) G-P(sol) polarization free energy of solvation -80.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds