Wall clock time and date at job start Sat Apr 11 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 120.00174 * 2 1 4 4 H 1.48498 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47260 * 300.00524 * 3 2 1 6 6 H 1.48501 * 109.46771 * 60.00341 * 3 2 1 7 7 C 1.38812 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99716 * 177.66311 * 7 2 1 9 9 N 1.36936 * 120.00519 * 357.65768 * 7 2 1 10 10 C 1.47002 * 121.37283 * 334.08164 * 9 7 2 11 11 C 1.50324 * 109.16320 * 222.96193 * 10 9 7 12 12 C 1.29454 * 123.65089 * 349.02769 * 11 10 9 13 13 C 1.50708 * 117.69427 * 180.85483 * 12 11 10 14 14 C 1.52999 * 109.46852 * 94.99823 * 13 12 11 15 15 N 1.46505 * 109.46834 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99756 * 179.97438 * 15 14 13 17 17 O 1.21780 * 120.00253 * 4.44763 * 16 15 14 18 18 C 1.41812 * 119.99700 * 184.45072 * 16 15 14 19 19 C 1.38529 * 126.78794 * 354.52204 * 18 16 15 20 20 N 1.32333 * 108.21090 * 180.02562 * 19 18 16 21 21 C 1.33196 * 109.81833 * 0.02562 * 20 19 18 22 22 C 1.40651 * 131.82033 * 180.02562 * 21 20 19 23 23 C 1.36285 * 119.38983 * 179.97438 * 22 21 20 24 24 C 1.40173 * 119.60270 * 359.97438 * 23 22 21 25 25 C 1.35258 * 120.13049 * 359.97438 * 24 23 22 26 26 N 1.35961 * 120.63811 * 359.74407 * 25 24 23 27 27 C 1.49973 * 124.61154 * 1.13155 * 12 11 10 28 28 C 1.47337 * 121.37311 * 154.09642 * 9 7 2 29 29 H 0.97000 * 120.00290 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.52206 * 103.06051 * 10 9 7 31 31 H 1.08993 * 109.52493 * 342.86467 * 10 9 7 32 32 H 1.08002 * 118.17823 * 168.99686 * 11 10 9 33 33 H 1.08997 * 109.47047 * 214.99447 * 13 12 11 34 34 H 1.08997 * 109.46876 * 335.00165 * 13 12 11 35 35 H 1.08997 * 109.46987 * 299.99660 * 14 13 12 36 36 H 1.09001 * 109.47360 * 59.99780 * 14 13 12 37 37 H 0.96995 * 120.00262 * 359.97438 * 15 14 13 38 38 H 1.07991 * 125.89025 * 359.97438 * 19 18 16 39 39 H 1.08000 * 120.30456 * 359.94778 * 22 21 20 40 40 H 1.07993 * 120.20079 * 179.97438 * 23 22 21 41 41 H 1.08007 * 119.93416 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.68410 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.31423 * 101.01386 * 27 12 11 44 44 H 1.09003 * 109.31363 * 220.43908 * 27 12 11 45 45 H 1.09004 * 109.77832 * 237.79111 * 28 9 7 46 46 H 1.08994 * 109.78065 * 358.60072 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0896 -1.2026 -0.0387 9 7 1.3264 -2.3876 0.0474 10 6 -0.0136 -2.4745 0.6457 11 6 -0.0966 -3.7140 1.4921 12 6 0.7987 -4.6490 1.4848 13 6 0.5705 -5.8443 2.3739 14 6 -0.0974 -6.9597 1.5672 15 7 -0.3198 -8.1215 2.4316 16 6 -0.9004 -9.2310 1.9331 17 8 -1.1662 -9.2985 0.7466 18 6 -1.2017 -10.3197 2.7904 19 6 -0.8686 -10.4378 4.1298 20 7 -1.3282 -11.5982 4.5695 21 6 -1.9449 -12.2435 3.5809 22 6 -2.5916 -13.4917 3.5355 23 6 -3.1489 -13.9141 2.3657 24 6 -3.0700 -13.0999 1.2275 25 6 -2.4447 -11.9023 1.2914 26 7 -1.8911 -11.4709 2.4559 27 6 2.0500 -4.6238 0.6584 28 6 1.9035 -3.6286 -0.4982 29 1 -0.4850 0.8400 0.0004 30 1 -0.7629 -2.5223 -0.1445 31 1 -0.1929 -1.5969 1.2665 32 1 -0.9505 -3.8308 2.1430 33 1 1.5265 -6.1977 2.7600 34 1 -0.0749 -5.5608 3.2052 35 1 -1.0534 -6.6063 1.1810 36 1 0.5479 -7.2432 0.7357 37 1 -0.0493 -8.0922 3.3626 38 1 -0.3266 -9.7090 4.7140 39 1 -2.6457 -14.1099 4.4194 40 1 -3.6482 -14.8704 2.3160 41 1 -3.5094 -13.4296 0.2975 42 1 -2.3885 -11.2805 0.4101 43 1 2.8911 -4.3307 1.2867 44 1 2.2351 -5.6190 0.2542 45 1 1.2418 -4.0388 -1.2612 46 1 2.8822 -3.4213 -0.9307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160559925.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:47 Heat of formation + Delta-G solvation = 92.787244 kcal Electronic energy + Delta-G solvation = -27821.898913 eV Core-core repulsion = 23906.728787 eV Total energy + Delta-G solvation = -3915.170126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.33504 -39.71651 -37.91427 -37.79413 -35.52526 -34.05408 -33.62222 -31.59703 -30.84096 -30.08658 -29.59939 -28.32061 -25.59233 -24.43020 -23.95049 -22.87878 -22.68505 -22.37882 -21.02021 -20.72083 -18.53969 -17.61290 -17.41413 -16.91318 -16.63882 -16.14795 -16.08831 -15.58843 -15.38340 -14.99459 -14.93864 -14.42450 -14.02109 -13.99090 -13.85759 -13.54037 -13.26642 -12.91837 -12.62265 -12.44316 -12.37382 -12.18546 -11.95914 -11.61034 -11.48073 -11.40733 -11.00124 -10.85997 -10.81702 -10.75691 -10.29354 -10.24629 -10.06578 -9.83924 -9.52426 -9.42217 -9.23211 -8.68782 -8.33517 -7.87239 -6.67970 -5.75397 -3.20100 0.23996 0.37462 1.87961 1.94414 2.88572 3.01374 3.11831 3.24440 3.37894 3.44702 3.46710 3.66437 4.03083 4.28990 4.36440 4.49351 4.55572 4.58434 4.87868 5.00130 5.12091 5.15846 5.28099 5.34575 5.44665 5.46578 5.57236 5.61489 5.66870 5.80598 5.95620 5.96791 6.02319 6.05427 6.16389 6.23850 6.31030 6.42155 6.47570 6.59249 6.82128 6.93129 7.18853 7.29237 7.32301 7.43214 7.47713 7.75645 7.96415 7.97039 8.44579 9.24302 9.84811 10.43386 11.32547 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035119 B = 0.001721 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.087962 B =16266.971591 C =16496.717550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.598 5.598 10 C 0.191 3.809 11 C -0.144 4.144 12 C -0.147 4.147 13 C -0.091 4.091 14 C 0.128 3.872 15 N -0.718 5.718 16 C 0.595 3.405 17 O -0.554 6.554 18 C -0.144 4.144 19 C 0.108 3.892 20 N -0.496 5.496 21 C 0.242 3.758 22 C -0.092 4.092 23 C -0.085 4.085 24 C -0.146 4.146 25 C 0.076 3.924 26 N -0.322 5.322 27 C -0.091 4.091 28 C 0.143 3.857 29 H 0.253 0.747 30 H 0.035 0.965 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.400 0.600 38 H 0.192 0.808 39 H 0.156 0.844 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.178 0.822 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.024 0.976 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 -27.763 7.362 29.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.200 4.200 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.321 5.321 10 C 0.066 3.934 11 C -0.164 4.164 12 C -0.148 4.148 13 C -0.129 4.129 14 C 0.005 3.995 15 N -0.369 5.369 16 C 0.384 3.616 17 O -0.434 6.434 18 C -0.258 4.258 19 C -0.053 4.053 20 N -0.214 5.214 21 C 0.002 3.998 22 C -0.112 4.112 23 C -0.110 4.110 24 C -0.166 4.166 25 C -0.048 4.048 26 N 0.009 4.991 27 C -0.130 4.130 28 C 0.016 3.984 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.235 0.765 38 H 0.208 0.792 39 H 0.174 0.826 40 H 0.166 0.834 41 H 0.175 0.825 42 H 0.195 0.805 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.919 -27.845 7.245 29.375 hybrid contribution 0.389 1.184 -0.275 1.276 sum -5.531 -26.661 6.970 28.107 Atomic orbital electron populations 1.69929 1.05135 1.25157 1.55888 1.25106 0.95632 0.98157 1.01141 0.86110 0.79055 0.83759 0.77233 1.20360 1.21656 1.21714 1.19273 0.90340 0.83191 1.44150 0.91341 1.44139 1.16833 1.04268 1.66874 1.19922 0.86345 0.93075 0.94044 1.23219 0.96770 0.97743 0.98676 1.20200 0.98285 0.95250 1.01064 1.20913 1.00375 0.94044 0.97601 1.21483 1.01221 0.83580 0.93189 1.45735 1.62031 1.14331 1.14763 1.15394 0.78173 0.81436 0.86596 1.90830 1.54761 1.81849 1.15947 1.19886 1.15265 0.92905 0.97787 1.23204 0.97053 0.94864 0.90202 1.70520 1.16346 1.07165 1.27394 1.21137 1.01627 0.94726 0.82283 1.20363 0.98311 0.92234 1.00274 1.21203 0.97796 1.00330 0.91623 1.21005 1.01483 0.93324 1.00801 1.22132 0.95943 0.97528 0.89234 1.42438 1.33104 1.13733 1.09871 1.20785 0.95122 0.98981 0.98092 1.20995 0.97242 0.87482 0.92679 0.93657 0.94750 0.87619 0.89159 0.91380 0.91435 0.91126 0.90989 0.76532 0.79153 0.82625 0.83446 0.82544 0.80455 0.91989 0.92977 0.95788 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.39 10.49 55.49 0.58 -25.81 16 2 C 0.00 -0.09 5.28 -17.43 -0.09 -0.19 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.61 9.74 -15.06 -0.15 -6.76 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.60 -15.17 3.02 -173.57 -0.52 -15.70 16 10 C 0.19 4.63 5.23 -5.10 -0.03 4.60 16 11 C -0.14 -2.80 9.47 -35.78 -0.34 -3.14 16 12 C -0.15 -2.52 5.11 -100.98 -0.52 -3.04 16 13 C -0.09 -1.16 5.32 -27.88 -0.15 -1.31 16 14 C 0.13 1.62 5.66 -4.04 -0.02 1.60 16 15 N -0.72 -7.68 5.53 -63.16 -0.35 -8.03 16 16 C 0.60 7.65 7.59 -14.89 -0.11 7.53 16 17 O -0.55 -8.86 15.37 5.12 0.08 -8.79 16 18 C -0.14 -1.66 6.83 -83.48 -0.57 -2.23 16 19 C 0.11 1.06 11.32 -17.23 -0.20 0.86 16 20 N -0.50 -5.61 11.25 -12.27 -0.14 -5.74 16 21 C 0.24 2.53 7.77 -156.06 -1.21 1.31 16 22 C -0.09 -0.64 10.10 -39.37 -0.40 -1.03 16 23 C -0.09 -0.42 10.07 -39.56 -0.40 -0.82 16 24 C -0.15 -0.83 10.00 -39.92 -0.40 -1.23 16 25 C 0.08 0.68 10.51 -16.78 -0.18 0.51 16 26 N -0.32 -3.55 2.96 -60.14 -0.18 -3.73 16 27 C -0.09 -1.60 5.95 -28.09 -0.17 -1.77 16 28 C 0.14 3.02 6.59 -3.44 -0.02 3.00 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.11 2.86 6.10 -51.93 -0.32 2.54 16 32 H 0.09 1.56 7.73 -52.49 -0.41 1.15 16 33 H 0.07 0.78 8.11 -51.93 -0.42 0.35 16 34 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 37 H 0.40 3.03 7.26 -40.82 -0.30 2.74 16 38 H 0.19 1.13 7.38 -52.49 -0.39 0.74 16 39 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.15 0.24 8.06 -52.49 -0.42 -0.19 16 41 H 0.16 0.42 8.06 -52.48 -0.42 0.00 16 42 H 0.18 1.67 6.81 -52.49 -0.36 1.31 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -34.58 380.26 -11.11 -45.70 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.35 Total: 1.71 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -4.94 Total: -2.10 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.61 Total: -59.01 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.58 -11.11 -45.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160559925.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.486 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds