Wall clock time and date at job start Sat Apr 11 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 120.00174 * 2 1 4 4 H 1.48498 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47260 * 300.00524 * 3 2 1 6 6 H 1.48501 * 109.46771 * 60.00341 * 3 2 1 7 7 C 1.38812 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99716 * 177.66311 * 7 2 1 9 9 N 1.36936 * 120.00519 * 357.65768 * 7 2 1 10 10 C 1.47002 * 121.37283 * 334.08164 * 9 7 2 11 11 C 1.50324 * 109.16320 * 222.96193 * 10 9 7 12 12 C 1.29454 * 123.65089 * 349.02769 * 11 10 9 13 13 C 1.50708 * 117.69427 * 180.85483 * 12 11 10 14 14 C 1.52999 * 109.46852 * 94.99823 * 13 12 11 15 15 N 1.46505 * 109.46834 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99756 * 179.97438 * 15 14 13 17 17 O 1.21780 * 120.00253 * 4.44763 * 16 15 14 18 18 C 1.41812 * 119.99700 * 184.45072 * 16 15 14 19 19 C 1.38529 * 126.78794 * 354.52204 * 18 16 15 20 20 N 1.32333 * 108.21090 * 180.02562 * 19 18 16 21 21 C 1.33196 * 109.81833 * 0.02562 * 20 19 18 22 22 C 1.40651 * 131.82033 * 180.02562 * 21 20 19 23 23 C 1.36285 * 119.38983 * 179.97438 * 22 21 20 24 24 C 1.40173 * 119.60270 * 359.97438 * 23 22 21 25 25 C 1.35258 * 120.13049 * 359.97438 * 24 23 22 26 26 N 1.35961 * 120.63811 * 359.74407 * 25 24 23 27 27 C 1.49973 * 124.61154 * 1.13155 * 12 11 10 28 28 C 1.47337 * 121.37311 * 154.09642 * 9 7 2 29 29 H 0.97000 * 120.00290 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.52206 * 103.06051 * 10 9 7 31 31 H 1.08993 * 109.52493 * 342.86467 * 10 9 7 32 32 H 1.08002 * 118.17823 * 168.99686 * 11 10 9 33 33 H 1.08997 * 109.47047 * 214.99447 * 13 12 11 34 34 H 1.08997 * 109.46876 * 335.00165 * 13 12 11 35 35 H 1.08997 * 109.46987 * 299.99660 * 14 13 12 36 36 H 1.09001 * 109.47360 * 59.99780 * 14 13 12 37 37 H 0.96995 * 120.00262 * 359.97438 * 15 14 13 38 38 H 1.07991 * 125.89025 * 359.97438 * 19 18 16 39 39 H 1.08000 * 120.30456 * 359.94778 * 22 21 20 40 40 H 1.07993 * 120.20079 * 179.97438 * 23 22 21 41 41 H 1.08007 * 119.93416 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.68410 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.31423 * 101.01386 * 27 12 11 44 44 H 1.09003 * 109.31363 * 220.43908 * 27 12 11 45 45 H 1.09004 * 109.77832 * 237.79111 * 28 9 7 46 46 H 1.08994 * 109.78065 * 358.60072 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0896 -1.2026 -0.0387 9 7 1.3264 -2.3876 0.0474 10 6 -0.0136 -2.4745 0.6457 11 6 -0.0966 -3.7140 1.4921 12 6 0.7987 -4.6490 1.4848 13 6 0.5705 -5.8443 2.3739 14 6 -0.0974 -6.9597 1.5672 15 7 -0.3198 -8.1215 2.4316 16 6 -0.9004 -9.2310 1.9331 17 8 -1.1662 -9.2985 0.7466 18 6 -1.2017 -10.3197 2.7904 19 6 -0.8686 -10.4378 4.1298 20 7 -1.3282 -11.5982 4.5695 21 6 -1.9449 -12.2435 3.5809 22 6 -2.5916 -13.4917 3.5355 23 6 -3.1489 -13.9141 2.3657 24 6 -3.0700 -13.0999 1.2275 25 6 -2.4447 -11.9023 1.2914 26 7 -1.8911 -11.4709 2.4559 27 6 2.0500 -4.6238 0.6584 28 6 1.9035 -3.6286 -0.4982 29 1 -0.4850 0.8400 0.0004 30 1 -0.7629 -2.5223 -0.1445 31 1 -0.1929 -1.5969 1.2665 32 1 -0.9505 -3.8308 2.1430 33 1 1.5265 -6.1977 2.7600 34 1 -0.0749 -5.5608 3.2052 35 1 -1.0534 -6.6063 1.1810 36 1 0.5479 -7.2432 0.7357 37 1 -0.0493 -8.0922 3.3626 38 1 -0.3266 -9.7090 4.7140 39 1 -2.6457 -14.1099 4.4194 40 1 -3.6482 -14.8704 2.3160 41 1 -3.5094 -13.4296 0.2975 42 1 -2.3885 -11.2805 0.4101 43 1 2.8911 -4.3307 1.2867 44 1 2.2351 -5.6190 0.2542 45 1 1.2418 -4.0388 -1.2612 46 1 2.8822 -3.4213 -0.9307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160559925.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:46 Heat of formation + Delta-G solvation = 71.484438 kcal Electronic energy + Delta-G solvation = -27822.822672 eV Core-core repulsion = 23906.728787 eV Total energy + Delta-G solvation = -3916.093885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.00556 -40.67903 -39.42941 -38.43602 -36.79413 -35.19641 -34.65327 -33.24838 -31.72189 -31.37425 -30.83583 -29.52981 -27.16424 -25.39580 -24.71159 -24.40390 -23.73671 -23.34078 -22.45161 -21.70517 -19.50243 -19.29600 -18.10655 -17.68184 -17.47071 -17.38334 -17.04179 -16.69773 -16.62025 -16.31187 -15.77193 -15.55491 -15.36762 -15.27582 -15.05439 -14.85653 -14.63954 -14.25327 -13.82039 -13.36284 -13.34128 -13.25505 -13.01403 -12.95671 -12.84589 -12.74436 -12.61601 -12.34250 -12.12667 -12.06212 -11.85825 -11.70198 -11.61191 -11.22538 -11.04271 -10.72965 -10.27332 -10.00309 -9.45986 -9.00703 -8.70814 -7.84869 -5.33212 -0.36589 -0.22915 1.18334 1.24904 1.46178 1.47005 1.49103 1.58027 2.23375 2.32941 2.45504 2.50224 3.08900 3.31136 3.43444 3.67063 3.70526 3.80983 3.92829 3.98269 4.07854 4.11910 4.13933 4.28428 4.31380 4.55626 4.57184 4.59586 4.70251 4.80379 4.87951 4.93348 4.98398 5.01548 5.08405 5.13133 5.20426 5.26605 5.29516 5.37027 5.46469 5.46969 5.58104 5.62820 5.84721 5.90424 6.31009 6.38660 6.39955 6.58092 7.08774 7.15560 7.84183 8.38638 9.21099 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035119 B = 0.001721 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.087962 B =16266.971591 C =16496.717550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.059 4.059 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.072 0.928 9 N -0.618 5.618 10 C 0.201 3.799 11 C -0.174 4.174 12 C -0.124 4.124 13 C -0.079 4.079 14 C 0.138 3.862 15 N -0.703 5.703 16 C 0.595 3.405 17 O -0.596 6.596 18 C -0.182 4.182 19 C 0.119 3.881 20 N -0.525 5.525 21 C 0.227 3.773 22 C -0.104 4.104 23 C -0.066 4.066 24 C -0.123 4.123 25 C 0.038 3.962 26 N -0.331 5.331 27 C -0.087 4.087 28 C 0.135 3.865 29 H 0.249 0.751 30 H -0.001 1.001 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.418 0.582 38 H 0.224 0.776 39 H 0.178 0.822 40 H 0.192 0.808 41 H 0.191 0.809 42 H 0.163 0.837 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.019 0.981 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.178 -30.886 8.831 32.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.253 4.253 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.090 0.910 9 N -0.342 5.342 10 C 0.076 3.924 11 C -0.193 4.193 12 C -0.125 4.125 13 C -0.116 4.116 14 C 0.014 3.986 15 N -0.355 5.355 16 C 0.386 3.614 17 O -0.480 6.480 18 C -0.296 4.296 19 C -0.043 4.043 20 N -0.244 5.244 21 C -0.012 4.012 22 C -0.124 4.124 23 C -0.090 4.090 24 C -0.142 4.142 25 C -0.087 4.087 26 N 0.000 5.000 27 C -0.126 4.126 28 C 0.010 3.990 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.255 0.745 38 H 0.240 0.760 39 H 0.195 0.805 40 H 0.209 0.791 41 H 0.208 0.792 42 H 0.180 0.820 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.037 0.963 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.348 -30.998 8.741 32.648 hybrid contribution 0.176 1.940 -0.805 2.108 sum -5.172 -29.058 7.936 30.563 Atomic orbital electron populations 1.70148 1.06554 1.25464 1.57012 1.25913 0.96470 1.01461 1.01461 0.85074 0.78435 0.79485 0.76704 1.18939 1.21972 1.21717 1.19620 0.90776 0.84365 1.43558 0.90995 1.44417 1.17055 1.05086 1.67616 1.19535 0.85319 0.94382 0.93201 1.22908 0.99293 0.96799 1.00296 1.20554 0.96563 0.95666 0.99672 1.20809 1.02214 0.91718 0.96875 1.21197 1.00011 0.84135 0.93221 1.45478 1.61479 1.13163 1.15367 1.15608 0.77605 0.82021 0.86185 1.90799 1.56740 1.82727 1.17730 1.19831 1.17829 0.93476 0.98417 1.23738 0.95973 0.94889 0.89671 1.70527 1.17727 1.08017 1.28136 1.21776 1.01737 0.95711 0.82020 1.20837 0.98156 0.91269 1.02109 1.21744 0.95847 1.01310 0.90101 1.21539 0.98676 0.91516 1.02515 1.22317 0.98439 0.99198 0.88756 1.42590 1.33173 1.13732 1.10501 1.20749 0.95544 0.99428 0.96869 1.21192 0.96928 0.86827 0.94092 0.94187 0.98355 0.91167 0.87081 0.88683 0.89654 0.93058 0.92033 0.74470 0.76003 0.80469 0.79057 0.79181 0.81985 0.91356 0.89696 0.96334 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.85 10.49 21.65 0.23 -56.63 16 2 C -0.06 -3.37 5.28 84.86 0.45 -2.92 16 3 Si 0.97 45.64 29.55 68.60 2.03 47.66 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.25 -14.23 9.74 84.03 0.82 -13.41 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.62 -32.19 3.02 -703.05 -2.12 -34.31 16 10 C 0.20 10.23 5.23 85.42 0.45 10.67 16 11 C -0.17 -6.78 9.47 27.11 0.26 -6.52 16 12 C -0.12 -4.05 5.11 -15.13 -0.08 -4.12 16 13 C -0.08 -1.76 5.32 29.85 0.16 -1.60 16 14 C 0.14 3.31 5.66 86.38 0.49 3.79 16 15 N -0.70 -14.09 5.53 -471.92 -2.61 -16.71 16 16 C 0.60 15.37 7.59 85.13 0.65 16.02 16 17 O -0.60 -19.83 15.37 -4.60 -0.07 -19.91 16 18 C -0.18 -4.19 6.83 39.08 0.27 -3.92 16 19 C 0.12 2.22 11.32 84.69 0.96 3.18 16 20 N -0.52 -11.40 11.25 -192.73 -2.17 -13.57 16 21 C 0.23 4.50 7.77 134.00 1.04 5.54 16 22 C -0.10 -1.18 10.10 22.40 0.23 -0.95 16 23 C -0.07 -0.39 10.07 22.28 0.22 -0.17 16 24 C -0.12 -1.07 10.00 22.05 0.22 -0.85 16 25 C 0.04 0.67 10.51 83.37 0.88 1.54 16 26 N -0.33 -7.27 2.96 -344.20 -1.02 -8.28 16 27 C -0.09 -2.91 5.95 29.72 0.18 -2.74 16 28 C 0.13 5.72 6.59 86.31 0.57 6.29 16 29 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.07 4.03 6.10 -2.39 -0.01 4.01 16 32 H 0.11 3.81 7.73 -2.91 -0.02 3.79 16 33 H 0.09 1.72 8.11 -2.39 -0.02 1.70 16 34 H 0.08 1.70 7.78 -2.39 -0.02 1.68 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.63 8.11 -2.39 -0.02 1.61 16 37 H 0.42 5.28 7.26 -92.71 -0.67 4.61 16 38 H 0.22 2.15 7.38 -2.92 -0.02 2.13 16 39 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 40 H 0.19 -0.51 8.06 -2.91 -0.02 -0.53 16 41 H 0.19 0.29 8.06 -2.91 -0.02 0.26 16 42 H 0.16 3.28 6.81 -2.91 -0.02 3.26 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.08 2.33 8.10 -2.39 -0.02 2.31 16 45 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 Total: -1.00 -80.80 380.26 2.35 -78.45 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.33 Total: 13.46 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 7.75 Total: 9.82 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -7.69 Total: -129.49 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.07 Total: -19.91 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -80.80 2.35 -78.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160559925.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.935 kcal (2) G-P(sol) polarization free energy of solvation -80.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds