Wall clock time and date at job start Sat Apr 11 2020 06:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86796 * 120.00003 * 2 1 4 4 H 1.48503 * 109.47036 * 85.18602 * 3 2 1 5 5 H 1.48493 * 109.47642 * 325.18608 * 3 2 1 6 6 H 1.48500 * 109.47013 * 205.17958 * 3 2 1 7 7 C 1.40056 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99869 * 197.51013 * 7 2 1 9 9 C 1.41269 * 120.00295 * 17.50545 * 7 2 1 10 10 C 1.40722 * 120.15650 * 24.96721 * 9 7 2 11 11 N 1.31904 * 119.92935 * 179.75457 * 10 9 7 12 12 C 1.32161 * 120.27247 * 0.54578 * 11 10 9 13 13 C 1.39921 * 120.31597 * 359.68821 * 12 11 10 14 14 N 1.38835 * 119.96426 * 180.02562 * 13 12 11 15 15 C 1.46499 * 119.99924 * 0.02562 * 14 13 12 16 16 C 1.53002 * 109.46863 * 179.97438 * 15 14 13 17 17 H 1.08997 * 109.50984 * 304.91438 * 16 15 14 18 18 C 1.53100 * 109.50571 * 184.78237 * 16 15 14 19 19 N 1.47015 * 109.25686 * 183.21896 * 18 16 15 20 20 C 1.39679 * 110.99804 * 182.38997 * 19 18 16 21 21 C 1.38911 * 120.07534 * 0.04318 * 20 19 18 22 22 C 1.38101 * 119.92419 * 179.76498 * 21 20 19 23 23 C 1.38286 * 120.07543 * 0.50865 * 22 21 20 24 24 C 1.38289 * 120.14990 * 359.74487 * 23 22 21 25 25 C 1.38108 * 120.07241 * 359.97438 * 24 23 22 26 26 C 1.47009 * 110.75364 * 58.61644 * 19 18 16 27 27 C 1.53098 * 109.25741 * 301.38310 * 26 19 18 28 28 O 1.43016 * 109.50480 * 65.00197 * 16 15 14 29 29 N 1.32260 * 120.06947 * 0.03951 * 13 12 11 30 30 H 0.97002 * 119.99376 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.03488 * 0.02562 * 10 9 7 32 32 H 1.07999 * 119.84073 * 179.70252 * 12 11 10 33 33 H 0.97006 * 119.99925 * 180.02562 * 14 13 12 34 34 H 1.08997 * 109.47196 * 299.99355 * 15 14 13 35 35 H 1.09002 * 109.47350 * 60.00427 * 15 14 13 36 36 H 1.09000 * 109.50380 * 303.15398 * 18 16 15 37 37 H 1.08996 * 109.50725 * 63.28260 * 18 16 15 38 38 H 1.08006 * 120.03472 * 359.97438 * 21 20 19 39 39 H 1.08004 * 119.96519 * 180.25258 * 22 21 20 40 40 H 1.08000 * 119.92728 * 179.76152 * 23 22 21 41 41 H 1.07994 * 119.96325 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.03584 * 180.02562 * 25 24 23 43 43 H 1.09007 * 109.50556 * 181.44641 * 26 19 18 44 44 H 1.09000 * 109.51044 * 61.31907 * 26 19 18 45 45 H 1.08999 * 109.50820 * 296.91261 * 27 26 19 46 46 H 1.09005 * 109.50733 * 176.78572 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3870 2.1051 1.3952 5 1 1.4935 2.6212 -0.7993 6 1 3.5861 1.4128 -0.5957 7 6 2.0076 -1.2129 -0.0005 8 1 3.0500 -1.2348 0.2809 9 6 1.3503 -2.4079 -0.3691 10 6 0.2220 -2.3640 -1.2089 11 7 -0.3853 -3.4829 -1.5541 12 6 0.0548 -4.6456 -1.1057 13 6 1.1728 -4.7014 -0.2661 14 7 1.6292 -5.9269 0.2002 15 6 0.9408 -7.1606 -0.1873 16 6 1.6405 -8.3590 0.4571 17 1 2.6972 -8.3504 0.1899 18 6 0.9967 -9.6556 -0.0412 19 7 1.6210 -10.7996 0.6391 20 6 1.0971 -12.0069 0.1713 21 6 0.1168 -12.0055 -0.8129 22 6 -0.3955 -13.2012 -1.2766 23 6 0.0587 -14.3986 -0.7548 24 6 1.0307 -14.4034 0.2288 25 6 1.5515 -13.2115 0.6929 26 6 1.4652 -10.6872 2.0966 27 6 2.1043 -9.3803 2.5735 28 8 1.5069 -8.2821 1.8790 29 7 1.7949 -3.5880 0.0839 30 1 -0.4849 0.8401 -0.0004 31 1 -0.1436 -1.4157 -1.5740 32 1 -0.4507 -5.5570 -1.3889 33 1 2.4040 -5.9661 0.7826 34 1 -0.0950 -7.1199 0.1498 35 1 0.9662 -7.2657 -1.2719 36 1 -0.0708 -9.6397 0.1785 37 1 1.1462 -9.7461 -1.1171 38 1 -0.2418 -11.0705 -1.2174 39 1 -1.1548 -13.2010 -2.0447 40 1 -0.3464 -15.3321 -1.1165 41 1 1.3836 -15.3403 0.6338 42 1 2.3110 -13.2160 1.4608 43 1 1.9567 -11.5309 2.5813 44 1 0.4052 -10.6879 2.3505 45 1 3.1745 -9.4022 2.3679 46 1 1.9413 -9.2652 3.6452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160578207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:51 Heat of formation + Delta-G solvation = 18.718230 kcal Electronic energy + Delta-G solvation = -28097.516613 eV Core-core repulsion = 24179.134614 eV Total energy + Delta-G solvation = -3918.381999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62181 -40.90654 -39.63511 -37.27888 -36.50564 -35.74479 -34.26060 -33.04854 -31.82400 -31.14116 -30.49612 -28.25239 -27.87284 -26.54579 -24.63826 -24.06082 -23.21071 -22.96097 -22.28349 -21.36392 -19.55570 -18.80118 -18.14948 -17.65691 -17.50215 -16.93794 -16.81451 -16.74950 -16.46114 -16.33232 -15.87259 -15.63765 -15.37275 -15.15346 -14.80722 -14.75063 -14.55956 -14.39032 -14.10634 -13.55748 -13.44660 -13.18245 -13.07985 -13.00606 -12.74006 -12.66918 -12.41902 -12.30634 -12.00968 -11.87102 -11.80036 -11.71823 -11.65045 -11.26433 -11.07419 -10.48518 -10.39136 -9.86638 -9.30622 -8.88281 -8.83757 -8.50173 -6.65168 0.42475 0.47773 0.74270 1.12146 1.41920 1.53504 1.60574 2.16258 2.24028 2.60005 2.62221 2.67325 2.93341 3.68560 3.70500 3.77114 3.78478 3.91954 4.02804 4.06966 4.14831 4.21606 4.28518 4.31143 4.35242 4.42435 4.48013 4.52394 4.55989 4.61062 4.61781 4.66893 4.76877 4.89613 4.90053 5.03230 5.06179 5.10859 5.22882 5.24821 5.49828 5.65414 5.73562 5.78296 5.88512 6.04445 6.11194 6.27437 6.30096 6.47531 6.63508 6.88777 7.39428 7.87039 8.18552 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029141 B = 0.001896 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.599858 B =14762.754058 C =15461.806919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.039 3.961 3 Si 1.004 2.996 4 H -0.259 1.259 5 H -0.258 1.258 6 H -0.256 1.256 7 C -0.454 4.454 8 H 0.086 0.914 9 C 0.239 3.761 10 C -0.073 4.073 11 N -0.428 5.428 12 C -0.164 4.164 13 C 0.374 3.626 14 N -0.716 5.716 15 C 0.145 3.855 16 C 0.094 3.906 17 H 0.076 0.924 18 C 0.030 3.970 19 N -0.492 5.492 20 C 0.094 3.906 21 C -0.185 4.185 22 C -0.103 4.103 23 C -0.153 4.153 24 C -0.101 4.101 25 C -0.149 4.149 26 C 0.025 3.975 27 C 0.059 3.941 28 O -0.396 6.396 29 N -0.612 5.612 30 H 0.300 0.700 31 H 0.145 0.855 32 H 0.154 0.846 33 H 0.399 0.601 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.134 0.866 43 H 0.111 0.889 44 H 0.046 0.954 45 H 0.066 0.934 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 -25.373 2.158 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.180 4.180 3 Si 0.822 3.178 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.179 1.179 7 C -0.488 4.488 8 H 0.104 0.896 9 C 0.111 3.889 10 C -0.243 4.243 11 N -0.140 5.140 12 C -0.325 4.325 13 C 0.131 3.869 14 N -0.352 5.352 15 C 0.020 3.980 16 C 0.036 3.964 17 H 0.094 0.906 18 C -0.098 4.098 19 N -0.208 5.208 20 C -0.003 4.003 21 C -0.206 4.206 22 C -0.121 4.121 23 C -0.171 4.171 24 C -0.119 4.119 25 C -0.169 4.169 26 C -0.101 4.101 27 C -0.018 4.018 28 O -0.315 6.315 29 N -0.341 5.341 30 H 0.111 0.889 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.234 0.766 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.152 0.848 43 H 0.129 0.871 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.045 -25.215 2.091 25.384 hybrid contribution -0.257 0.517 0.318 0.659 sum 1.788 -24.699 2.410 24.880 Atomic orbital electron populations 1.69807 1.09440 1.31965 1.31946 1.27024 0.95607 1.05049 0.90346 0.84882 0.78968 0.74212 0.79740 1.18344 1.18151 1.17933 1.19629 0.98508 0.90418 1.40196 0.89639 1.19405 0.90626 0.90830 0.88056 1.23262 1.00542 0.95696 1.04766 1.67648 1.27922 0.99042 1.19425 1.22473 1.02325 0.96510 1.11189 1.19505 0.90385 0.87252 0.89777 1.44056 1.34631 1.01410 1.55067 1.21336 0.96171 0.81065 0.99434 1.22252 0.99860 0.92866 0.81424 0.90564 1.22790 0.97519 0.88811 1.00680 1.59307 1.54542 1.00874 1.06068 1.19128 0.93683 0.90306 0.97220 1.21537 0.97963 0.99840 1.01221 1.21312 0.99372 0.92127 0.99321 1.21426 0.98803 0.98698 0.98202 1.21341 0.96064 0.98185 0.96316 1.20995 1.02078 0.90996 1.02844 1.22976 1.00796 1.00488 0.85819 1.22891 0.97286 0.83908 0.97708 1.88100 1.79212 1.46111 1.18058 1.68471 1.36789 0.98010 1.30873 0.88916 0.83812 0.82848 0.76586 0.91986 0.89254 0.92311 0.87586 0.85202 0.84487 0.84182 0.83721 0.84838 0.87118 0.93548 0.91572 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.55 10.96 21.84 0.24 -41.31 16 2 C 0.04 1.93 5.14 85.30 0.44 2.37 16 3 Si 1.00 36.77 29.59 68.60 2.03 38.80 16 4 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 5 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 6 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 7 C -0.45 -25.13 9.28 23.46 0.22 -24.92 16 8 H 0.09 4.62 7.91 -2.91 -0.02 4.59 16 9 C 0.24 13.95 6.41 40.16 0.26 14.21 16 10 C -0.07 -4.23 9.87 85.29 0.84 -3.39 16 11 N -0.43 -23.39 10.47 -192.23 -2.01 -25.40 16 12 C -0.16 -7.95 10.50 85.05 0.89 -7.05 16 13 C 0.37 18.07 7.66 133.35 1.02 19.09 16 14 N -0.72 -26.58 5.67 -344.63 -1.95 -28.53 16 15 C 0.14 3.96 4.57 86.38 0.39 4.36 16 16 C 0.09 2.11 2.84 30.63 0.09 2.20 16 17 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 18 C 0.03 0.55 3.61 86.31 0.31 0.87 16 19 N -0.49 -8.92 4.77 -694.30 -3.31 -12.23 16 20 C 0.09 1.68 5.64 38.21 0.22 1.89 16 21 C -0.18 -3.19 8.82 22.40 0.20 -2.99 16 22 C -0.10 -1.51 10.04 22.25 0.22 -1.29 16 23 C -0.15 -1.98 10.04 22.29 0.22 -1.75 16 24 C -0.10 -1.29 10.04 22.25 0.22 -1.07 16 25 C -0.15 -2.27 9.20 22.40 0.21 -2.06 16 26 C 0.02 0.39 5.40 86.32 0.47 0.85 16 27 C 0.06 1.02 7.01 72.01 0.50 1.53 16 28 O -0.40 -9.81 10.42 -148.98 -1.55 -11.37 16 29 N -0.61 -34.01 10.49 -186.00 -1.95 -35.96 16 30 H 0.30 13.58 8.29 -92.71 -0.77 12.81 16 31 H 0.14 8.38 6.17 -2.91 -0.02 8.37 16 32 H 0.15 6.24 6.70 -2.91 -0.02 6.22 16 33 H 0.40 14.51 8.60 -92.70 -0.80 13.72 16 34 H 0.06 1.78 7.93 -2.39 -0.02 1.76 16 35 H 0.09 2.19 7.93 -2.39 -0.02 2.17 16 36 H 0.06 1.12 7.54 -2.39 -0.02 1.10 16 37 H 0.11 1.76 7.22 -2.39 -0.02 1.74 16 38 H 0.13 2.07 5.81 -2.91 -0.02 2.05 16 39 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 41 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 42 H 0.13 1.66 7.18 -2.91 -0.02 1.64 16 43 H 0.11 1.30 6.85 -2.38 -0.02 1.28 16 44 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 46 H 0.12 1.66 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -70.16 374.65 -1.57 -71.73 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: 0.22 Total: 41.43 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 6.72 Total: 2.84 kcal Atomic # 7 Polarization: -134.44 SS G_CDS: -8.99 Total: -143.43 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -1.55 Total: -11.37 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Total: -70.16 -1.57 -71.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160578207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.446 kcal (2) G-P(sol) polarization free energy of solvation -70.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds