Wall clock time and date at job start Sat Apr 11 2020 06:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99764 * 2 1 4 4 H 1.48506 * 109.47079 * 239.99805 * 3 2 1 5 5 H 1.48503 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47316 * 119.99901 * 3 2 1 7 7 C 1.38805 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00164 * 164.52606 * 7 2 1 9 9 N 1.36941 * 120.00270 * 344.52958 * 7 2 1 10 10 C 1.47003 * 121.37440 * 335.96282 * 9 7 2 11 11 C 1.50320 * 109.17024 * 222.97318 * 10 9 7 12 12 C 1.29455 * 123.64857 * 349.02088 * 11 10 9 13 13 C 1.50698 * 117.69596 * 180.85597 * 12 11 10 14 14 C 1.53000 * 109.47082 * 95.00028 * 13 12 11 15 15 N 1.46499 * 109.47414 * 180.02562 * 14 13 12 16 16 C 1.34772 * 120.00012 * 180.02562 * 15 14 13 17 17 O 1.21605 * 120.00174 * 359.97438 * 16 15 14 18 18 C 1.47524 * 120.00085 * 180.02562 * 16 15 14 19 19 C 1.46508 * 120.16302 * 0.02562 * 18 16 15 20 20 C 1.35535 * 119.04162 * 179.97438 * 19 18 16 21 21 C 1.41229 * 119.42943 * 359.97438 * 20 19 18 22 22 C 1.37912 * 132.96956 * 180.02562 * 21 20 19 23 23 N 1.33448 * 107.65722 * 179.74056 * 22 21 20 24 24 C 1.30751 * 109.93549 * 0.43157 * 23 22 21 25 25 N 1.35919 * 109.20675 * 359.56101 * 24 23 22 26 26 C 1.36324 * 120.17040 * 179.97438 * 18 16 15 27 27 C 1.49966 * 124.61041 * 1.14108 * 12 11 10 28 28 C 1.47341 * 121.37572 * 155.99141 * 9 7 2 29 29 H 0.96996 * 120.00268 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.52434 * 103.06459 * 10 9 7 31 31 H 1.09004 * 109.51987 * 342.87758 * 10 9 7 32 32 H 1.08002 * 118.17755 * 169.00010 * 11 10 9 33 33 H 1.09002 * 109.47054 * 335.00185 * 13 12 11 34 34 H 1.08993 * 109.47554 * 215.00262 * 13 12 11 35 35 H 1.09002 * 109.47048 * 60.00152 * 14 13 12 36 36 H 1.09006 * 109.47284 * 300.00602 * 14 13 12 37 37 H 0.97000 * 120.00025 * 359.97438 * 15 14 13 38 38 H 1.07997 * 120.47736 * 0.02562 * 19 18 16 39 39 H 1.08005 * 120.28162 * 179.97438 * 20 19 18 40 40 H 1.07996 * 126.16921 * 0.02562 * 22 21 20 41 41 H 1.08000 * 125.39258 * 179.82744 * 24 23 22 42 42 H 1.08006 * 119.74510 * 0.02562 * 26 18 16 43 43 H 1.09010 * 109.31696 * 101.01061 * 27 12 11 44 44 H 1.09003 * 109.31498 * 220.43516 * 27 12 11 45 45 H 1.08998 * 109.77470 * 237.78305 * 28 9 7 46 46 H 1.09001 * 109.78045 * 358.59075 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0609 -1.2192 -0.2490 9 7 1.3628 -2.3664 0.3174 10 6 0.1444 -2.3652 1.1398 11 6 0.2244 -3.4823 2.1424 12 6 1.1202 -4.4163 2.1057 13 6 1.0637 -5.4830 3.1687 14 6 0.2869 -6.6901 2.6390 15 7 0.2315 -7.7270 3.6725 16 6 -0.4065 -8.8887 3.4279 17 8 -0.9365 -9.0761 2.3496 18 6 -0.4628 -9.9326 4.4688 19 6 0.1730 -9.7100 5.7698 20 6 0.1069 -10.6842 6.7098 21 6 -0.5713 -11.8875 6.4154 22 6 -0.8063 -13.0360 7.1419 23 7 -1.5129 -13.8651 6.3710 24 6 -1.7286 -13.3145 5.2048 25 7 -1.1645 -12.0781 5.1829 26 6 -1.1076 -11.1087 4.2254 27 6 2.2137 -4.5080 1.0836 28 6 1.8591 -3.6722 -0.1514 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7265 -2.5111 0.5008 31 1 0.0585 -1.4124 1.6622 32 1 -0.5057 -3.5070 2.9378 33 1 0.5633 -5.0886 4.0531 34 1 2.0765 -5.7891 3.4305 35 1 0.7873 -7.0846 1.7546 36 1 -0.7260 -6.3840 2.3771 37 1 0.6545 -7.5777 4.5325 38 1 0.6862 -8.7826 5.9772 39 1 0.5689 -10.5415 7.6755 40 1 -0.4813 -13.2278 8.1538 41 1 -2.2727 -13.7685 4.3898 42 1 -1.5772 -11.2740 3.2669 43 1 3.1441 -4.1408 1.5170 44 1 2.3437 -5.5489 0.7871 45 1 1.0848 -4.1743 -0.7313 46 1 2.7477 -3.5299 -0.7664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160700160.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:59 Heat of formation + Delta-G solvation = 91.204860 kcal Electronic energy + Delta-G solvation = -27532.230888 eV Core-core repulsion = 23616.992146 eV Total energy + Delta-G solvation = -3915.238743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.19795 -40.15025 -38.00963 -37.27460 -35.62245 -34.06109 -33.53862 -31.77607 -31.17470 -29.86382 -28.75931 -28.61791 -25.80587 -24.51011 -23.45635 -23.01446 -22.51650 -22.23694 -21.16852 -20.78821 -18.68570 -17.68212 -17.60517 -17.05443 -16.44740 -16.38342 -15.81754 -15.62150 -15.22242 -15.11766 -14.99617 -14.36588 -14.14118 -14.01550 -13.98294 -13.61482 -13.48599 -13.36537 -12.69205 -12.36682 -12.23360 -12.17354 -12.03752 -11.62471 -11.46020 -11.29504 -11.07015 -10.91989 -10.79917 -10.74043 -10.47839 -10.34168 -10.21342 -9.83051 -9.80932 -9.58016 -9.29876 -8.66687 -8.08211 -7.95861 -6.73840 -5.79693 -3.18574 0.12620 0.49846 1.94682 2.23875 2.65905 2.73740 3.03890 3.10829 3.37891 3.43490 3.44557 3.86547 4.06357 4.11227 4.26533 4.31956 4.43666 4.48802 4.87804 4.98101 5.03419 5.11325 5.20883 5.24549 5.35585 5.38428 5.51798 5.57294 5.59288 5.73673 5.91873 5.93971 5.96796 6.04550 6.10023 6.16437 6.20857 6.36357 6.53102 6.57876 6.76642 6.88729 7.13438 7.20996 7.30601 7.34512 7.38269 7.73489 7.83272 7.85788 8.38293 9.19675 9.82505 10.41051 11.30668 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.038915 B = 0.001626 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.337590 B =17221.088306 C =17415.480192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.196 3.804 11 C -0.145 4.145 12 C -0.144 4.144 13 C -0.092 4.092 14 C 0.123 3.877 15 N -0.718 5.718 16 C 0.567 3.433 17 O -0.535 6.535 18 C -0.154 4.154 19 C -0.105 4.105 20 C -0.074 4.074 21 C 0.002 3.998 22 C -0.016 4.016 23 N -0.453 5.453 24 C 0.156 3.844 25 N -0.379 5.379 26 C 0.131 3.869 27 C -0.091 4.091 28 C 0.143 3.857 29 H 0.254 0.746 30 H 0.039 0.961 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.400 0.600 38 H 0.143 0.857 39 H 0.153 0.847 40 H 0.183 0.817 41 H 0.216 0.784 42 H 0.182 0.818 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.024 0.976 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -23.019 14.595 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.071 3.929 11 C -0.164 4.164 12 C -0.145 4.145 13 C -0.130 4.130 14 C 0.001 3.999 15 N -0.369 5.369 16 C 0.353 3.647 17 O -0.414 6.414 18 C -0.161 4.161 19 C -0.126 4.126 20 C -0.094 4.094 21 C -0.106 4.106 22 C -0.169 4.169 23 N -0.165 5.165 24 C -0.119 4.119 25 N -0.051 5.051 26 C 0.008 3.992 27 C -0.130 4.130 28 C 0.016 3.984 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.160 0.840 39 H 0.170 0.830 40 H 0.200 0.800 41 H 0.233 0.767 42 H 0.199 0.801 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.208 -23.819 13.929 27.619 hybrid contribution 0.826 1.754 0.266 1.957 sum -0.381 -22.065 14.195 26.239 Atomic orbital electron populations 1.70007 1.05163 1.25588 1.54728 1.24988 0.95390 0.98273 1.01278 0.86324 0.78808 0.83303 0.78063 1.20931 1.21635 1.21127 1.19144 0.92187 0.84418 1.41837 0.91446 1.44122 1.29246 1.01140 1.57333 1.19711 0.88673 0.94763 0.89769 1.23138 0.96598 0.97328 0.99347 1.20210 0.99420 0.96602 0.98255 1.20914 0.99993 0.94072 0.97984 1.21535 1.01596 0.86495 0.90281 1.45951 1.56034 1.16205 1.18732 1.17643 0.78884 0.81767 0.86385 1.90844 1.46013 1.79680 1.24822 1.20453 1.04328 0.95172 0.96143 1.22071 0.99357 0.99804 0.91329 1.20434 0.98262 0.90127 1.00532 1.19786 1.04516 0.99085 0.87217 1.22632 1.03849 0.89588 1.00792 1.69990 1.14488 1.30380 1.01688 1.25297 1.05153 0.82119 0.99374 1.43017 1.36782 1.13714 1.11590 1.21744 0.97199 0.86745 0.93543 1.20795 0.96539 0.98999 0.96678 1.20992 0.97340 0.87236 0.92824 0.93573 0.94382 0.89126 0.89058 0.91453 0.91373 0.90874 0.90892 0.76496 0.83978 0.82961 0.79990 0.76716 0.80128 0.91903 0.92927 0.95789 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.16 11.08 55.49 0.61 -25.55 16 2 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 3 Si 0.91 21.57 29.58 -169.99 -5.03 16.54 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.73 9.71 -15.06 -0.15 -6.87 16 8 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16 9 N -0.60 -14.86 3.01 -173.57 -0.52 -15.38 16 10 C 0.20 4.64 5.23 -5.10 -0.03 4.61 16 11 C -0.14 -2.70 9.47 -35.78 -0.34 -3.04 16 12 C -0.14 -2.36 5.11 -100.99 -0.52 -2.88 16 13 C -0.09 -1.08 5.32 -27.88 -0.15 -1.23 16 14 C 0.12 1.44 5.66 -4.04 -0.02 1.42 16 15 N -0.72 -6.66 5.51 -61.35 -0.34 -7.00 16 16 C 0.57 6.12 7.77 -12.48 -0.10 6.03 16 17 O -0.54 -7.75 16.29 5.27 0.09 -7.67 16 18 C -0.15 -1.30 5.98 -103.47 -0.62 -1.92 16 19 C -0.10 -0.64 9.73 -37.22 -0.36 -1.00 16 20 C -0.07 -0.44 10.09 -39.41 -0.40 -0.84 16 21 C 0.00 0.01 6.78 -84.02 -0.57 -0.56 16 22 C -0.02 -0.13 12.00 -16.97 -0.20 -0.34 16 23 N -0.45 -4.38 11.19 -13.78 -0.15 -4.53 16 24 C 0.16 1.22 12.76 -89.36 -1.14 0.08 16 25 N -0.38 -3.14 2.94 -61.93 -0.18 -3.32 16 26 C 0.13 1.06 10.51 -16.22 -0.17 0.89 16 27 C -0.09 -1.55 5.95 -28.09 -0.17 -1.72 16 28 C 0.14 2.96 6.59 -3.43 -0.02 2.93 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 2.38 6.41 -51.93 -0.33 2.05 16 32 H 0.09 1.50 7.73 -52.49 -0.41 1.09 16 33 H 0.07 0.73 7.78 -51.93 -0.40 0.32 16 34 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 35 H 0.07 0.94 8.11 -51.93 -0.42 0.51 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 2.50 6.57 -40.82 -0.27 2.23 16 38 H 0.14 0.49 6.58 -52.49 -0.35 0.15 16 39 H 0.15 0.45 8.06 -52.48 -0.42 0.03 16 40 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.22 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.18 1.26 7.56 -52.48 -0.40 0.86 16 43 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 44 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -34.09 382.40 -11.13 -45.23 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.34 Total: 0.46 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -5.03 Total: -4.56 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.58 Total: -55.77 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.09 Total: -7.67 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.09 -11.13 -45.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160700160.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.433 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds