Wall clock time and date at job start Sat Apr 11 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00006 * 2 1 4 4 H 1.48508 * 109.47103 * 240.00346 * 3 2 1 5 5 H 1.48492 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47018 * 120.00402 * 3 2 1 7 7 C 1.38819 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99398 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99632 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46654 * 175.59415 * 10 9 7 12 12 C 1.52996 * 115.55198 * 303.89866 * 11 10 9 13 13 C 1.53001 * 109.47478 * 278.03414 * 12 11 10 14 14 N 1.46494 * 109.47207 * 175.02350 * 13 12 11 15 15 C 1.34784 * 119.99826 * 179.97438 * 14 13 12 16 16 O 1.21504 * 119.99671 * 0.02562 * 15 14 13 17 17 C 1.48276 * 119.99903 * 179.97438 * 15 14 13 18 18 C 1.40368 * 119.18738 * 180.02562 * 17 15 14 19 19 C 1.36559 * 119.82934 * 180.02562 * 18 17 15 20 20 C 1.40550 * 118.05585 * 359.97438 * 19 18 17 21 21 C 1.40525 * 122.21254 * 179.97438 * 20 19 18 22 22 C 1.36255 * 118.68190 * 180.02562 * 21 20 19 23 23 N 1.32579 * 121.80720 * 0.02562 * 22 21 20 24 24 C 1.31114 * 122.87625 * 359.95161 * 23 22 21 25 25 C 1.40857 * 119.95502 * 0.04609 * 24 23 22 26 26 N 1.31894 * 119.19117 * 0.24707 * 17 15 14 27 27 C 1.53002 * 117.51659 * 89.60029 * 11 10 9 28 28 C 1.52997 * 59.99894 * 107.48046 * 27 11 10 29 29 H 0.96995 * 120.00313 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99931 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47160 * 55.60021 * 10 9 7 32 32 H 1.09001 * 109.47304 * 295.59102 * 10 9 7 33 33 H 1.09006 * 109.47290 * 158.02933 * 12 11 10 34 34 H 1.09006 * 109.47001 * 38.03509 * 12 11 10 35 35 H 1.09000 * 109.46606 * 55.02052 * 13 12 11 36 36 H 1.09003 * 109.46740 * 295.02750 * 13 12 11 37 37 H 0.96997 * 120.00418 * 359.97438 * 14 13 12 38 38 H 1.08002 * 120.08385 * 0.02562 * 18 17 15 39 39 H 1.07999 * 120.97050 * 180.02562 * 19 18 17 40 40 H 1.07996 * 120.65262 * 0.03885 * 21 20 19 41 41 H 1.08007 * 119.09420 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.02212 * 180.02562 * 24 23 22 43 43 H 1.09006 * 117.49808 * 214.96773 * 27 11 10 44 44 H 1.08997 * 117.49908 * 359.97438 * 27 11 10 45 45 H 1.09006 * 117.49900 * 252.50748 * 28 27 11 46 46 H 1.09007 * 117.50350 * 107.48993 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3882 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0675 -4.8176 0.1103 12 6 0.1320 -4.7736 1.3201 13 6 0.8589 -5.3270 2.5474 14 7 0.0067 -5.1756 3.7292 15 6 0.4427 -5.5969 4.9330 16 8 1.5429 -6.1019 5.0379 17 6 -0.4196 -5.4432 6.1293 18 6 0.0517 -5.8874 7.3746 19 6 -0.7318 -5.7527 8.4849 20 6 -1.9991 -5.1644 8.3323 21 6 -2.8764 -4.9836 9.4150 22 6 -4.0886 -4.4055 9.1851 23 7 -4.4571 -4.0131 7.9735 24 6 -3.6915 -4.1493 6.9178 25 6 -2.4168 -4.7352 7.0442 26 7 -1.6125 -4.8964 5.9964 27 6 0.5124 -5.3999 -1.1912 28 6 1.5335 -6.1925 -0.3727 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.7426 -3.6811 0.8474 32 1 2.6242 -3.7495 -0.9274 33 1 -0.7521 -5.3784 1.1180 34 1 -0.1684 -3.7431 1.5098 35 1 1.7887 -4.7781 2.6971 36 1 1.0813 -6.3828 2.3925 37 1 -0.8714 -4.7722 3.6456 38 1 1.0316 -6.3345 7.4545 39 1 -0.3874 -6.0876 9.4522 40 1 -2.5953 -5.2966 10.4097 41 1 -4.7683 -4.2638 10.0124 42 1 -4.0381 -3.8127 5.9519 43 1 -0.5193 -5.7516 -1.1854 44 1 0.8526 -4.9557 -2.1266 45 1 2.5457 -6.2701 -0.7698 46 1 1.1737 -7.0658 0.1715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166211353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:13 Heat of formation + Delta-G solvation = 43.566800 kcal Electronic energy + Delta-G solvation = -27899.306171 eV Core-core repulsion = 23982.001687 eV Total energy + Delta-G solvation = -3917.304484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.40516 -40.87448 -39.60323 -38.78673 -36.20822 -35.79928 -34.91158 -32.79177 -32.75150 -31.83814 -30.80509 -27.85671 -26.90224 -25.54616 -24.62066 -24.41557 -23.77286 -23.02525 -22.07146 -20.29807 -19.56603 -19.18443 -18.85640 -18.54997 -17.25962 -17.01669 -16.91268 -16.66014 -16.22573 -15.96469 -15.86178 -15.54820 -15.45786 -15.18807 -15.04863 -14.78002 -14.41993 -14.21363 -14.13657 -13.91673 -13.64886 -13.17401 -13.11693 -13.01646 -12.76642 -12.58201 -12.27675 -12.15670 -11.97721 -11.95666 -11.90587 -11.69527 -11.09725 -10.95933 -10.89292 -10.57488 -10.52712 -10.52052 -10.17091 -9.54030 -8.96460 -7.94057 -5.21487 -1.09500 -0.58086 0.65839 1.29235 1.45648 1.48380 1.54451 1.90957 2.15098 2.54587 2.73431 2.90746 2.94947 3.29905 3.38849 3.42309 3.49676 3.60122 3.71570 3.83734 3.85244 3.98266 4.04361 4.08481 4.24288 4.26987 4.39675 4.48251 4.48777 4.60731 4.61546 4.69097 4.80075 4.85494 4.94151 4.97927 5.02605 5.08953 5.17397 5.23719 5.26344 5.33869 5.35138 5.38586 5.48996 5.49195 6.18651 6.28140 6.48486 6.83355 6.98185 7.35260 8.11993 8.37342 9.28947 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009589 B = 0.002590 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.170274 B =10809.472997 C =12415.739193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.969 3.031 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.736 5.736 10 C 0.187 3.813 11 C -0.140 4.140 12 C -0.079 4.079 13 C 0.132 3.868 14 N -0.699 5.699 15 C 0.563 3.437 16 O -0.561 6.561 17 C 0.103 3.897 18 C -0.121 4.121 19 C -0.044 4.044 20 C -0.077 4.077 21 C -0.132 4.132 22 C 0.071 3.929 23 N -0.492 5.492 24 C 0.162 3.838 25 C 0.043 3.957 26 N -0.440 5.440 27 C -0.164 4.164 28 C -0.149 4.149 29 H 0.251 0.749 30 H 0.377 0.623 31 H 0.017 0.983 32 H 0.016 0.984 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.416 0.584 38 H 0.163 0.837 39 H 0.196 0.804 40 H 0.185 0.815 41 H 0.190 0.810 42 H 0.180 0.820 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 -17.520 19.430 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.061 3.939 11 C -0.141 4.141 12 C -0.117 4.117 13 C 0.009 3.991 14 N -0.349 5.349 15 C 0.348 3.652 16 O -0.439 6.439 17 C -0.052 4.052 18 C -0.142 4.142 19 C -0.069 4.069 20 C -0.084 4.084 21 C -0.152 4.152 22 C -0.071 4.071 23 N -0.201 5.201 24 C -0.011 4.011 25 C -0.082 4.082 26 N -0.153 5.153 27 C -0.201 4.201 28 C -0.186 4.186 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.253 0.747 38 H 0.181 0.819 39 H 0.213 0.787 40 H 0.203 0.797 41 H 0.207 0.793 42 H 0.197 0.803 43 H 0.125 0.875 44 H 0.102 0.898 45 H 0.117 0.883 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.819 -17.096 18.718 26.251 hybrid contribution 0.880 0.961 0.324 1.343 sum -5.939 -16.135 19.042 25.656 Atomic orbital electron populations 1.69793 1.06374 1.26031 1.59356 1.25493 0.96399 1.00792 1.03761 0.85275 0.77289 0.79529 0.78054 1.20438 1.21945 1.20760 1.19563 0.91333 0.85560 1.41379 0.91189 1.42449 1.05662 1.00638 1.89133 1.20244 0.92648 0.84086 0.96938 1.21379 1.01400 0.95180 0.96145 1.21109 0.97401 1.01547 0.91651 1.21315 0.93200 1.01377 0.83190 1.45913 1.21413 1.60463 1.07157 1.18181 0.85460 0.78326 0.83226 1.90761 1.21399 1.45862 1.85864 1.21376 0.91557 0.97718 0.94505 1.22033 1.02562 0.98412 0.91239 1.21883 0.90590 0.93720 1.00725 1.19441 0.96722 0.97783 0.94491 1.22330 0.93673 0.99078 1.00070 1.22962 0.95941 0.93769 0.94393 1.67556 1.35466 1.16876 1.00216 1.23385 0.87200 0.91809 0.98747 1.20136 0.96791 1.01493 0.89802 1.67644 1.03388 1.11005 1.33306 1.23057 0.99702 1.03206 0.94182 1.23062 0.99777 0.93204 1.02571 0.94024 0.79064 0.96500 0.96665 0.89369 0.92432 0.93277 0.90014 0.74697 0.81927 0.78739 0.79730 0.79271 0.80326 0.87497 0.89833 0.88304 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.44 13.06 21.65 0.28 -59.15 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 7 C -0.25 -14.11 9.99 84.04 0.84 -13.27 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.74 -37.94 5.23 -343.44 -1.80 -39.74 16 10 C 0.19 7.73 6.15 86.38 0.53 8.26 16 11 C -0.14 -4.41 1.65 -52.18 -0.09 -4.49 16 12 C -0.08 -2.37 5.20 30.59 0.16 -2.21 16 13 C 0.13 3.86 5.49 86.38 0.47 4.34 16 14 N -0.70 -19.83 5.54 -465.55 -2.58 -22.41 16 15 C 0.56 16.65 7.81 86.91 0.68 17.33 16 16 O -0.56 -19.13 16.28 -3.73 -0.06 -19.19 16 17 C 0.10 2.57 6.75 42.33 0.29 2.85 16 18 C -0.12 -2.26 9.54 22.40 0.21 -2.05 16 19 C -0.04 -0.56 9.93 22.44 0.22 -0.33 16 20 C -0.08 -1.25 5.75 -21.21 -0.12 -1.37 16 21 C -0.13 -1.34 9.88 22.37 0.22 -1.12 16 22 C 0.07 0.90 11.07 84.12 0.93 1.83 16 23 N -0.49 -9.43 10.28 -195.22 -2.01 -11.44 16 24 C 0.16 3.32 11.26 85.44 0.96 4.28 16 25 C 0.04 0.95 6.62 40.54 0.27 1.22 16 26 N -0.44 -10.95 9.49 -177.69 -1.69 -12.63 16 27 C -0.16 -4.50 9.87 30.59 0.30 -4.20 16 28 C -0.15 -3.58 9.57 30.59 0.29 -3.29 16 29 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.38 20.42 6.80 -92.71 -0.63 19.79 16 31 H 0.02 0.73 7.96 -2.39 -0.02 0.71 16 32 H 0.02 0.64 8.10 -2.39 -0.02 0.62 16 33 H 0.09 2.18 7.93 -2.38 -0.02 2.16 16 34 H 0.06 2.12 6.94 -2.38 -0.02 2.11 16 35 H 0.05 1.70 7.96 -2.39 -0.02 1.68 16 36 H 0.08 2.15 7.72 -2.39 -0.02 2.13 16 37 H 0.42 11.04 7.77 -92.71 -0.72 10.32 16 38 H 0.16 2.74 7.60 -2.91 -0.02 2.72 16 39 H 0.20 0.67 8.06 -2.91 -0.02 0.65 16 40 H 0.19 0.31 8.06 -2.91 -0.02 0.28 16 41 H 0.19 1.10 8.06 -2.91 -0.02 1.07 16 42 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 43 H 0.11 2.54 8.07 -2.38 -0.02 2.53 16 44 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 46 H 0.11 2.25 7.90 -2.38 -0.02 2.23 16 Total: -1.00 -75.22 392.20 0.49 -74.72 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.33 Total: 36.66 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 6.64 Total: 4.05 kcal Atomic # 7 Polarization: -137.59 SS G_CDS: -7.79 Total: -145.37 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.06 Total: -19.19 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -75.22 0.49 -74.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166211353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.287 kcal (2) G-P(sol) polarization free energy of solvation -75.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds