Wall clock time and date at job start Sat Apr 11 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86805 * 120.00471 * 2 1 4 4 H 1.48491 * 109.47037 * 239.99986 * 3 2 1 5 5 H 1.48500 * 109.46744 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47088 * 119.99866 * 3 2 1 7 7 C 1.38632 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00425 * 179.97438 * 7 2 1 9 9 O 1.34807 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.35817 * 117.00108 * 185.05274 * 9 7 2 11 11 C 1.39447 * 120.40409 * 354.52367 * 10 9 7 12 12 C 1.38206 * 118.44894 * 180.02562 * 11 10 9 13 13 C 1.39164 * 119.17088 * 0.02562 * 12 11 10 14 14 N 1.39125 * 119.62901 * 180.02562 * 13 12 11 15 15 C 1.46503 * 120.00259 * 359.97438 * 14 13 12 16 16 C 1.53112 * 109.52584 * 274.88069 * 15 14 13 17 17 C 1.53045 * 109.27760 * 182.50256 * 16 15 14 18 18 N 1.46851 * 109.57549 * 59.08187 * 17 16 15 19 19 C 1.39699 * 111.00252 * 174.19531 * 18 17 16 20 20 C 1.39312 * 120.49320 * 303.93887 * 19 18 17 21 21 C 1.38491 * 118.35859 * 179.71593 * 20 19 18 22 22 C 1.38272 * 119.24354 * 0.57352 * 21 20 19 23 23 N 1.31853 * 120.92784 * 359.67944 * 22 21 20 24 24 C 1.31820 * 121.79894 * 0.02562 * 23 22 21 25 25 C 1.46851 * 111.19754 * 298.29532 * 18 17 16 26 26 C 1.53037 * 109.52577 * 61.73834 * 25 18 17 27 27 N 1.32386 * 120.74060 * 359.97392 * 13 12 11 28 28 C 1.31926 * 121.68937 * 0.04556 * 27 13 12 29 29 H 0.97008 * 119.99232 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.77325 * 359.97438 * 11 10 9 31 31 H 1.08006 * 120.41422 * 179.72672 * 12 11 10 32 32 H 0.97003 * 120.00044 * 179.97438 * 14 13 12 33 33 H 1.09002 * 109.51682 * 35.00796 * 15 14 13 34 34 H 1.09003 * 109.50484 * 302.38039 * 16 15 14 35 35 H 1.08998 * 109.50352 * 62.49412 * 16 15 14 36 36 H 1.09004 * 109.40730 * 299.07033 * 17 16 15 37 37 H 1.08999 * 109.45722 * 179.12457 * 17 16 15 38 38 H 1.08001 * 120.81919 * 359.97438 * 20 19 18 39 39 H 1.08008 * 120.37807 * 180.30216 * 21 20 19 40 40 H 1.07999 * 119.53837 * 179.70558 * 22 21 20 41 41 H 1.07999 * 119.67044 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.45886 * 301.72365 * 25 18 17 43 43 H 1.08996 * 109.46337 * 181.76177 * 25 18 17 44 44 H 1.09004 * 109.50283 * 180.87943 * 26 25 18 45 45 H 1.08995 * 109.50194 * 60.76407 * 26 25 18 46 46 H 1.07997 * 119.62373 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.1036 1.6963 -1.2124 5 1 1.2849 2.7464 0.0006 6 1 3.1037 1.6963 1.2126 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3348 -2.3680 0.0005 10 6 2.0703 -3.5048 0.1077 11 6 3.4635 -3.4475 0.0971 12 6 4.1719 -4.6290 0.2081 13 6 3.4762 -5.8285 0.3254 14 7 4.1797 -7.0235 0.4382 15 6 5.6447 -7.0144 0.4326 16 6 6.1510 -7.0269 -1.0123 17 6 7.6805 -7.0805 -1.0113 18 7 8.1302 -8.2865 -0.3044 19 6 9.5162 -8.4343 -0.3980 20 6 10.1400 -8.4781 -1.6429 21 6 11.5170 -8.6199 -1.6840 22 6 12.2210 -8.7245 -0.4985 23 7 11.6002 -8.6848 0.6640 24 6 10.2922 -8.5453 0.7486 25 6 7.6959 -8.2727 1.0984 26 6 6.1669 -8.2563 1.1603 27 7 2.1525 -5.8452 0.3318 28 6 1.4449 -4.7367 0.2274 29 1 -0.4849 0.8402 0.0004 30 1 3.9770 -2.5019 0.0035 31 1 5.2519 -4.6219 0.1990 32 1 3.7002 -7.8627 0.5206 33 1 6.0053 -6.1180 0.9372 34 1 5.7575 -7.9028 -1.5283 35 1 5.8179 -6.1232 -1.5225 36 1 8.0736 -6.1969 -0.5083 37 1 8.0436 -7.1052 -2.0388 38 1 9.5643 -8.3993 -2.5533 39 1 12.0346 -8.6527 -2.6314 40 1 13.2944 -8.8400 -0.5252 41 1 9.8191 -8.5175 1.7191 42 1 8.0889 -7.3835 1.5914 43 1 8.0704 -9.1631 1.6033 44 1 5.8451 -8.2303 2.2015 45 1 5.7736 -9.1520 0.6796 46 1 0.3662 -4.7891 0.2359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171468498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:25 Heat of formation + Delta-G solvation = 45.640097 kcal Electronic energy + Delta-G solvation = -28110.959889 eV Core-core repulsion = 24193.745309 eV Total energy + Delta-G solvation = -3917.214579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78822 -41.25544 -39.83379 -38.88008 -36.72385 -34.31936 -33.59646 -33.02927 -32.88937 -31.91977 -30.34010 -29.04965 -27.20002 -25.52189 -25.44980 -24.41517 -23.34003 -23.06356 -22.46824 -20.97938 -19.96617 -19.08313 -18.72938 -17.79287 -17.58786 -17.29289 -17.14594 -16.24295 -16.10694 -15.99903 -15.80768 -15.49772 -15.30417 -15.15040 -14.97101 -14.81357 -14.45181 -14.22605 -14.10849 -14.04006 -13.83194 -13.54006 -13.32251 -13.16088 -12.86701 -12.72168 -12.46312 -12.23488 -12.18270 -11.98742 -11.63292 -11.57591 -11.27571 -10.95802 -10.58970 -10.56208 -10.39862 -10.28851 -10.25908 -8.95166 -8.42158 -8.25458 -6.07022 0.18489 0.35220 0.36733 0.74218 1.37428 1.47878 1.53258 2.17815 2.28953 2.55734 2.90026 2.92876 3.20837 3.53803 3.61635 3.67664 3.73109 3.83546 3.92871 3.96770 4.00746 4.09060 4.11634 4.21190 4.27574 4.29731 4.33724 4.39342 4.53564 4.56437 4.64605 4.71176 4.77508 4.84306 4.89921 4.97014 5.00903 5.08069 5.15753 5.23405 5.25343 5.32059 5.50754 5.57048 5.59664 5.88985 6.01429 6.12503 6.28623 6.76735 7.01890 7.06546 7.34530 7.83021 8.80793 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.002065 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.322808 B =13554.731285 C =14712.111553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.016 2.984 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.410 4.410 8 H 0.101 0.899 9 O -0.228 6.228 10 C 0.023 3.977 11 C -0.150 4.150 12 C -0.179 4.179 13 C 0.331 3.669 14 N -0.719 5.719 15 C 0.158 3.842 16 C -0.128 4.128 17 C 0.065 3.935 18 N -0.486 5.486 19 C 0.058 3.942 20 C -0.108 4.108 21 C -0.141 4.141 22 C 0.054 3.946 23 N -0.494 5.494 24 C 0.034 3.966 25 C 0.052 3.948 26 C -0.114 4.114 27 N -0.514 5.514 28 C 0.065 3.935 29 H 0.271 0.729 30 H 0.137 0.863 31 H 0.152 0.848 32 H 0.404 0.596 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.149 0.851 39 H 0.164 0.836 40 H 0.173 0.827 41 H 0.165 0.835 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.048 -17.770 -1.784 29.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.836 3.164 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.118 0.882 9 O -0.134 6.134 10 C -0.030 4.030 11 C -0.177 4.177 12 C -0.203 4.203 13 C 0.095 3.905 14 N -0.356 5.356 15 C 0.052 3.948 16 C -0.168 4.168 17 C -0.060 4.060 18 N -0.201 5.201 19 C -0.042 4.042 20 C -0.136 4.136 21 C -0.161 4.161 22 C -0.104 4.104 23 N -0.202 5.202 24 C -0.126 4.126 25 C -0.075 4.075 26 C -0.152 4.152 27 N -0.231 5.231 28 C -0.092 4.092 29 H 0.080 0.920 30 H 0.155 0.845 31 H 0.169 0.831 32 H 0.239 0.761 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.167 0.833 39 H 0.181 0.819 40 H 0.191 0.809 41 H 0.182 0.818 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 23.540 -18.756 -1.177 30.121 hybrid contribution -0.193 1.948 -0.524 2.027 sum 23.347 -16.808 -1.701 28.818 Atomic orbital electron populations 1.70191 1.07951 1.28680 1.49119 1.26531 0.96838 1.02622 0.96187 0.84678 0.77376 0.74501 0.79865 1.18127 1.19950 1.18250 1.21704 0.92394 0.81486 1.53037 0.88179 1.83959 1.34986 1.11972 1.82523 1.20618 0.92156 0.89273 1.00935 1.21570 0.93033 0.99821 1.03258 1.21376 1.01027 0.90451 1.07485 1.18315 0.87701 0.87545 0.96896 1.44161 1.04658 1.04506 1.82250 1.21023 0.78438 0.99603 0.95689 1.22081 0.94147 1.03028 0.97538 1.22209 0.95144 0.88994 0.99690 1.59016 1.07886 1.37567 1.15624 1.20095 0.89169 0.99727 0.95191 1.21569 0.95301 0.99665 0.97084 1.22362 0.94140 0.98606 1.00983 1.23105 1.01623 0.98159 0.87536 1.67569 1.10868 1.11474 1.30312 1.23199 0.89508 1.01310 0.98577 1.22309 0.95285 1.02943 0.86932 1.21785 0.94247 0.97448 1.01701 1.67032 1.07123 1.29720 1.19274 1.21520 0.99558 0.84899 1.03250 0.91990 0.84525 0.83064 0.76070 0.90666 0.90758 0.91443 0.93413 0.88906 0.83295 0.81854 0.80942 0.81791 0.92546 0.88269 0.89301 0.89997 0.83196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.96 13.67 21.61 0.30 -55.66 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 3 Si 1.02 42.00 29.55 68.60 2.03 44.02 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.41 -23.22 9.50 67.91 0.64 -22.58 16 8 H 0.10 5.11 5.25 -2.91 -0.02 5.09 16 9 O -0.23 -13.43 9.77 -23.25 -0.23 -13.65 16 10 C 0.02 1.13 6.67 22.67 0.15 1.29 16 11 C -0.15 -6.23 9.25 22.55 0.21 -6.02 16 12 C -0.18 -5.97 8.86 22.48 0.20 -5.77 16 13 C 0.33 10.97 7.63 133.03 1.02 11.98 16 14 N -0.72 -17.02 5.26 -324.04 -1.70 -18.72 16 15 C 0.16 2.72 2.20 45.07 0.10 2.81 16 16 C -0.13 -2.10 5.60 30.65 0.17 -1.92 16 17 C 0.07 0.88 5.26 86.33 0.45 1.33 16 18 N -0.49 -6.61 4.71 -694.94 -3.27 -9.88 16 19 C 0.06 0.87 5.65 38.30 0.22 1.08 16 20 C -0.11 -1.37 9.29 22.59 0.21 -1.16 16 21 C -0.14 -1.51 10.10 22.34 0.23 -1.29 16 22 C 0.05 0.73 11.18 84.70 0.95 1.68 16 23 N -0.49 -9.15 10.35 -195.29 -2.02 -11.17 16 24 C 0.03 0.55 10.01 84.85 0.85 1.40 16 25 C 0.05 0.60 4.16 86.32 0.36 0.96 16 26 C -0.11 -1.42 5.57 30.65 0.17 -1.25 16 27 N -0.51 -20.06 10.39 -192.67 -2.00 -22.06 16 28 C 0.06 2.87 11.14 84.78 0.94 3.82 16 29 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 30 H 0.14 5.55 5.76 -2.91 -0.02 5.54 16 31 H 0.15 3.92 6.03 -2.91 -0.02 3.90 16 32 H 0.40 8.89 8.73 -92.71 -0.81 8.08 16 33 H 0.08 1.36 6.45 -2.39 -0.02 1.35 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.29 7.65 -2.39 -0.02 1.28 16 36 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.09 1.10 6.78 -2.39 -0.02 1.08 16 38 H 0.15 1.43 7.25 -2.91 -0.02 1.41 16 39 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 40 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.17 2.18 5.83 -2.91 -0.02 2.16 16 42 H 0.06 0.62 7.75 -2.38 -0.02 0.61 16 43 H 0.10 0.97 7.00 -2.39 -0.02 0.95 16 44 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.15 6.45 8.06 -2.91 -0.02 6.43 16 Total: -1.00 -72.75 372.10 0.65 -72.10 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.22 Total: 29.55 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 7.33 Total: -14.53 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -8.70 Total: -117.49 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.23 Total: -13.65 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -72.75 0.65 -72.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171468498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.736 kcal (2) G-P(sol) polarization free energy of solvation -72.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds