Wall clock time and date at job start Sat Apr 11 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.47327 * 270.00499 * 3 2 1 5 5 H 1.48506 * 109.46931 * 30.00267 * 3 2 1 6 6 H 1.48497 * 109.47148 * 150.00041 * 3 2 1 7 7 C 1.37881 * 120.00645 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00423 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99468 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.46978 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00129 * 170.00073 * 10 9 7 12 12 C 1.53240 * 109.34282 * 187.25133 * 11 10 9 13 13 N 1.47076 * 108.51839 * 306.17263 * 12 11 10 14 14 C 1.34784 * 120.87618 * 231.18214 * 13 12 11 15 15 O 1.21543 * 120.00157 * 5.79287 * 14 13 12 16 16 C 1.47867 * 119.99640 * 185.79411 * 14 13 12 17 17 C 1.39653 * 120.08323 * 219.57595 * 16 14 13 18 18 C 1.38016 * 120.09507 * 180.25241 * 17 16 14 19 19 C 1.38165 * 120.27292 * 0.04363 * 18 17 16 20 20 C 1.39398 * 120.17210 * 359.95772 * 19 18 17 21 21 C 1.48440 * 120.05190 * 179.97438 * 20 19 18 22 22 C 1.40836 * 126.03263 * 0.02562 * 21 20 19 23 23 C 1.35086 * 107.84654 * 180.02562 * 22 21 20 24 24 N 1.35038 * 107.97910 * 359.97438 * 23 22 21 25 25 H 0.97000 * 125.93056 * 180.02562 * 24 23 22 26 26 N 1.31618 * 126.03752 * 179.70989 * 21 20 19 27 27 C 1.39095 * 119.90366 * 0.02562 * 20 19 18 28 28 C 1.47080 * 118.24146 * 51.45738 * 13 12 11 29 29 C 1.46902 * 111.00091 * 294.30000 * 10 9 7 30 30 H 0.96998 * 120.00206 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.47139 * 59.99979 * 9 7 2 32 32 H 1.08999 * 109.47353 * 300.00047 * 9 7 2 33 33 H 1.09008 * 109.49076 * 67.29384 * 11 10 9 34 34 H 1.08997 * 109.51506 * 307.22857 * 11 10 9 35 35 H 1.08999 * 109.62626 * 186.46049 * 12 11 10 36 36 H 1.09001 * 109.62593 * 65.88125 * 12 11 10 37 37 H 1.08001 * 119.95149 * 0.27549 * 17 16 14 38 38 H 1.08002 * 119.86359 * 179.97438 * 18 17 16 39 39 H 1.07997 * 119.91197 * 179.97438 * 19 18 17 40 40 H 1.08000 * 126.07915 * 359.97438 * 22 21 20 41 41 H 1.08005 * 126.01156 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.13786 * 180.02562 * 27 20 19 43 43 H 1.08995 * 109.62719 * 68.24918 * 28 13 12 44 44 H 1.08999 * 109.62827 * 188.82840 * 28 13 12 45 45 H 1.08998 * 109.49156 * 292.70939 * 29 10 9 46 46 H 1.09006 * 109.48915 * 52.78702 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5214 -4.8935 0.2376 12 6 2.5640 -6.0032 0.4103 13 7 3.4617 -5.9861 -0.7545 14 6 3.7121 -7.1123 -1.4514 15 8 3.1138 -8.1366 -1.1865 16 6 4.7146 -7.1016 -2.5383 17 6 4.4752 -7.8087 -3.7185 18 6 5.4130 -7.8032 -4.7310 19 6 6.5931 -7.0999 -4.5835 20 6 6.8438 -6.3902 -3.4102 21 6 8.1128 -5.6360 -3.2543 22 6 9.1475 -5.5499 -4.2058 23 6 10.1241 -4.7744 -3.6863 24 7 9.7327 -4.3798 -2.4556 25 1 10.2384 -3.8137 -1.8518 26 7 8.4671 -4.9251 -2.2049 27 6 5.9035 -6.3906 -2.3852 28 6 4.0839 -4.7088 -1.1350 29 6 2.9768 -3.6490 -1.2505 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8896 33 1 0.8797 -5.1264 -0.6123 34 1 0.9159 -4.8194 1.1409 35 1 2.0633 -6.9694 0.4727 36 1 3.1396 -5.8265 1.3190 37 1 3.5546 -8.3605 -3.8392 38 1 5.2241 -8.3517 -5.6420 39 1 7.3231 -7.0999 -5.3794 40 1 9.1588 -6.0208 -5.1776 41 1 11.0540 -4.5149 -4.1705 42 1 6.0936 -5.8416 -1.4747 43 1 4.8028 -4.4102 -0.3721 44 1 4.5887 -4.8190 -2.0947 45 1 2.3149 -3.8992 -2.0795 46 1 3.4272 -2.6720 -1.4261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189015572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:32 Heat of formation + Delta-G solvation = 61.532754 kcal Electronic energy + Delta-G solvation = -28924.120205 eV Core-core repulsion = 25007.594783 eV Total energy + Delta-G solvation = -3916.525422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.10204 -41.56322 -39.66139 -38.81109 -36.08571 -34.50031 -33.85639 -32.93740 -31.66476 -30.83069 -30.61164 -29.98102 -27.45363 -25.12002 -24.98005 -24.36996 -23.60105 -22.32383 -21.88628 -21.17468 -19.84974 -19.05107 -18.51588 -18.24251 -17.57833 -17.07672 -16.71451 -16.58482 -16.05191 -15.91491 -15.69087 -15.60455 -15.38513 -15.20096 -14.85331 -14.56580 -14.37720 -14.34426 -14.14373 -13.71124 -13.65039 -13.51076 -13.06884 -12.78872 -12.72101 -12.64336 -12.46213 -12.38379 -12.23369 -12.18290 -11.79938 -11.66276 -11.31279 -11.17708 -10.99830 -10.63751 -9.98601 -9.81926 -9.77987 -9.30083 -9.11286 -8.21844 -6.32293 -0.18715 0.08343 1.13001 1.40959 1.42448 1.54079 1.55556 1.82302 2.01603 2.04035 2.39450 2.88694 3.10040 3.17890 3.29903 3.51427 3.80252 3.89927 3.97291 4.00230 4.16088 4.17266 4.20214 4.27153 4.34378 4.43064 4.47945 4.59786 4.66233 4.70135 4.77841 4.83792 4.86722 4.93938 4.94382 5.03510 5.13661 5.18435 5.27884 5.37265 5.42094 5.43328 5.61815 5.66379 5.86084 5.99693 6.15914 6.30131 6.49894 6.52101 6.70601 6.82915 6.94777 7.37547 8.89630 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009258 B = 0.003303 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.778484 B = 8474.425208 C =10705.568104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.538 5.538 11 C 0.044 3.956 12 C 0.125 3.875 13 N -0.604 5.604 14 C 0.558 3.442 15 O -0.576 6.576 16 C -0.148 4.148 17 C -0.070 4.070 18 C -0.113 4.113 19 C -0.062 4.062 20 C -0.033 4.033 21 C 0.095 3.905 22 C -0.275 4.275 23 C 0.074 3.926 24 N -0.471 5.471 25 H 0.451 0.549 26 N -0.328 5.328 27 C -0.071 4.071 28 C 0.120 3.880 29 C 0.054 3.946 30 H 0.265 0.735 31 H -0.041 1.041 32 H 0.008 0.992 33 H 0.016 0.984 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.176 0.824 41 H 0.223 0.777 42 H 0.127 0.873 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.014 0.986 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.431 -13.375 -12.467 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.085 0.915 9 C 0.083 3.917 10 N -0.263 5.263 11 C -0.085 4.085 12 C 0.003 3.997 13 N -0.336 5.336 14 C 0.348 3.652 15 O -0.457 6.457 16 C -0.151 4.151 17 C -0.089 4.089 18 C -0.131 4.131 19 C -0.081 4.081 20 C -0.035 4.035 21 C -0.069 4.069 22 C -0.303 4.303 23 C -0.074 4.074 24 N -0.181 5.181 25 H 0.298 0.702 26 N -0.153 5.153 27 C -0.091 4.091 28 C -0.002 4.002 29 C -0.075 4.075 30 H 0.073 0.927 31 H -0.023 1.023 32 H 0.026 0.974 33 H 0.034 0.966 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.150 0.850 38 H 0.188 0.812 39 H 0.185 0.815 40 H 0.193 0.807 41 H 0.240 0.760 42 H 0.145 0.855 43 H 0.102 0.898 44 H 0.123 0.877 45 H 0.033 0.967 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 21.997 -13.287 -10.751 27.857 hybrid contribution -0.570 1.052 -0.579 1.329 sum 21.427 -12.235 -11.330 27.151 Atomic orbital electron populations 1.70087 1.07832 1.27965 1.51675 1.25920 0.95701 1.03243 0.94715 0.85374 0.78603 0.78167 0.78435 1.19774 1.20843 1.18733 1.21438 0.93722 0.90773 1.50189 0.91509 1.19379 0.90021 0.88781 0.93519 1.62025 1.27113 1.02757 1.34411 1.22442 0.95541 0.89858 1.00701 1.21708 0.91370 0.98745 0.87875 1.48204 1.46491 1.08751 1.30122 1.18786 0.82056 0.82601 0.81717 1.90713 1.52568 1.32918 1.69543 1.19727 0.95636 1.03550 0.96143 1.21460 1.00328 0.95456 0.91683 1.21403 0.92628 0.99516 0.99558 1.21680 0.97476 0.92959 0.95986 1.17925 0.91130 0.99005 0.95430 1.20867 0.95224 0.97428 0.93380 1.21876 0.94719 1.10221 1.03508 1.23293 1.01456 0.96472 0.86133 1.46446 1.14289 1.41678 1.15680 0.70227 1.77512 0.97484 1.16571 1.23782 1.21443 0.92166 0.96119 0.99354 1.22287 0.94757 0.81015 1.02189 1.22409 0.95409 0.99697 0.89997 0.92661 1.02294 0.97421 0.96587 0.89506 0.88727 0.89604 0.85044 0.81221 0.81492 0.80691 0.76019 0.85531 0.89849 0.87735 0.96749 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.53 13.29 21.45 0.28 -56.25 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.52 -29.52 8.41 25.60 0.22 -29.31 16 8 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 9 C 0.21 11.31 4.72 85.56 0.40 11.71 16 10 N -0.54 -23.81 4.62 -898.86 -4.15 -27.96 16 11 C 0.04 1.67 5.62 86.38 0.49 2.16 16 12 C 0.13 4.15 6.61 86.35 0.57 4.72 16 13 N -0.60 -20.02 3.00 -820.45 -2.46 -22.48 16 14 C 0.56 18.64 7.34 86.79 0.64 19.28 16 15 O -0.58 -22.26 16.37 -3.85 -0.06 -22.32 16 16 C -0.15 -4.04 5.13 -20.11 -0.10 -4.14 16 17 C -0.07 -1.55 9.63 22.56 0.22 -1.33 16 18 C -0.11 -1.69 10.02 22.20 0.22 -1.47 16 19 C -0.06 -0.91 9.57 22.53 0.22 -0.69 16 20 C -0.03 -0.69 5.87 -20.07 -0.12 -0.81 16 21 C 0.09 1.96 6.99 42.53 0.30 2.26 16 22 C -0.27 -3.65 10.17 22.18 0.23 -3.42 16 23 C 0.07 0.70 11.97 83.47 1.00 1.70 16 24 N -0.47 -6.80 7.35 -57.67 -0.42 -7.22 16 25 H 0.45 3.86 8.96 -213.34 -1.91 1.94 16 26 N -0.33 -7.65 12.36 -48.15 -0.60 -8.25 16 27 C -0.07 -1.80 7.05 22.75 0.16 -1.64 16 28 C 0.12 3.84 5.03 86.50 0.43 4.28 16 29 C 0.05 2.14 5.47 86.54 0.47 2.61 16 30 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 31 H -0.04 -2.41 8.13 -2.38 -0.02 -2.43 16 32 H 0.01 0.45 7.97 -2.39 -0.02 0.43 16 33 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.09 3.20 7.99 -2.39 -0.02 3.18 16 35 H 0.09 3.07 7.04 -2.39 -0.02 3.05 16 36 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 38 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.17 1.22 7.02 -2.91 -0.02 1.20 16 40 H 0.18 1.23 7.33 -2.91 -0.02 1.21 16 41 H 0.22 -0.10 8.06 -2.91 -0.02 -0.13 16 42 H 0.13 3.47 6.27 -2.91 -0.02 3.45 16 43 H 0.08 2.61 8.05 -2.39 -0.02 2.59 16 44 H 0.10 3.03 4.90 -2.39 -0.01 3.02 16 45 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.08 3.56 6.67 -2.38 -0.02 3.54 16 Total: -1.00 -78.39 377.27 -0.48 -78.87 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -0.89 Total: 13.10 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 5.80 Total: 6.49 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -7.35 Total: -122.16 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.06 Total: -22.32 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -78.39 -0.48 -78.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189015572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.403 kcal (2) G-P(sol) polarization free energy of solvation -78.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds