Wall clock time and date at job start Sat Apr 11 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00385 * 2 1 4 4 H 1.48493 * 109.47418 * 269.99896 * 3 2 1 5 5 H 1.48506 * 109.47222 * 29.99751 * 3 2 1 6 6 H 1.48502 * 109.47291 * 149.99566 * 3 2 1 7 7 C 1.37876 * 119.99822 * 179.97438 * 2 1 3 8 8 C 1.51264 * 120.85164 * 0.02562 * 7 2 1 9 9 C 1.53236 * 108.53521 * 231.32675 * 8 7 2 10 10 C 1.52952 * 109.40334 * 305.36633 * 9 8 7 11 11 H 1.09002 * 109.41950 * 303.56633 * 10 9 8 12 12 N 1.46502 * 109.41288 * 183.70285 * 10 9 8 13 13 C 1.34780 * 119.99700 * 154.72594 * 12 10 9 14 14 O 1.21675 * 120.00422 * 354.83049 * 13 12 10 15 15 C 1.46767 * 119.99553 * 174.82776 * 13 12 10 16 16 C 1.36664 * 126.84100 * 184.64439 * 15 13 12 17 17 N 1.33315 * 107.78521 * 180.02562 * 16 15 13 18 18 C 1.30859 * 109.68521 * 0.02562 * 17 16 15 19 19 N 1.34494 * 109.16428 * 359.72691 * 18 17 16 20 20 C 1.46496 * 126.47317 * 180.29624 * 19 18 17 21 21 C 1.50695 * 109.47525 * 4.22994 * 20 19 18 22 22 C 1.38652 * 120.79304 * 264.78982 * 21 20 19 23 23 C 1.38200 * 119.16301 * 179.75509 * 22 21 20 24 24 N 1.31871 * 120.76293 * 0.52776 * 23 22 21 25 25 C 1.31872 * 121.72672 * 359.74355 * 24 23 22 26 26 C 1.38200 * 120.76125 * 359.97438 * 25 24 23 27 27 C 1.52964 * 109.81525 * 63.60277 * 10 9 8 28 28 C 1.51278 * 120.84969 * 179.97438 * 7 2 1 29 29 H 0.97001 * 119.99586 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.63276 * 111.60846 * 8 7 2 31 31 H 1.08999 * 109.62407 * 351.03360 * 8 7 2 32 32 H 1.09003 * 109.48299 * 185.38889 * 9 8 7 33 33 H 1.08996 * 109.49480 * 65.35986 * 9 8 7 34 34 H 0.97001 * 119.99955 * 335.00903 * 12 10 9 35 35 H 1.07996 * 126.10738 * 0.02562 * 16 15 13 36 36 H 1.08001 * 125.41856 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.47077 * 124.23638 * 20 19 18 38 38 H 1.09005 * 109.46867 * 244.23206 * 20 19 18 39 39 H 1.08002 * 120.41788 * 359.97438 * 22 21 20 40 40 H 1.07997 * 119.61932 * 180.29175 * 23 22 21 41 41 H 1.08003 * 119.61576 * 180.02562 * 25 24 23 42 42 H 1.08004 * 120.41755 * 180.02562 * 26 25 24 43 43 H 1.09002 * 109.48231 * 56.37817 * 27 10 9 44 44 H 1.09000 * 109.48191 * 176.41852 * 27 10 9 45 45 H 1.09001 * 109.62324 * 248.38969 * 28 7 2 46 46 H 1.08996 * 109.62394 * 8.95571 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 6 1.2676 -2.5151 0.0005 9 6 1.8228 -3.3825 1.1352 10 6 3.3397 -3.5070 0.9841 11 1 3.5738 -3.9112 -0.0008 12 7 3.8596 -4.4075 2.0162 13 6 5.0143 -5.0718 1.8114 14 8 5.5763 -4.9976 0.7347 15 6 5.5939 -5.8847 2.8872 16 6 6.7929 -6.5401 2.8639 17 7 6.9418 -7.1583 4.0357 18 6 5.8997 -6.9259 4.7923 19 7 5.0382 -6.1362 4.1267 20 6 3.7523 -5.6388 4.6217 21 6 3.5682 -6.0623 6.0562 22 6 2.8594 -7.2115 6.3716 23 6 2.7156 -7.5712 7.6982 24 7 3.2342 -6.8303 8.6580 25 6 3.9095 -5.7285 8.3954 26 6 4.0989 -5.3091 7.0922 27 6 3.9906 -2.1310 1.1352 28 6 3.5170 -1.2165 0.0000 29 1 -0.4849 0.8401 -0.0004 30 1 1.4198 -3.0193 -0.9537 31 1 0.2036 -2.3408 0.1601 32 1 1.3705 -4.3732 1.0902 33 1 1.5897 -2.9198 2.0942 34 1 3.3707 -4.5287 2.8451 35 1 7.4944 -6.5547 2.0430 36 1 5.7563 -7.3044 5.7936 37 1 3.7351 -4.5507 4.5590 38 1 2.9456 -6.0504 4.0150 39 1 2.4282 -7.8197 5.5903 40 1 2.1690 -8.4674 7.9520 41 1 4.3200 -5.1476 9.2081 42 1 4.6533 -4.4061 6.8835 43 1 3.7062 -1.6977 2.0941 44 1 5.0747 -2.2347 1.0901 45 1 3.8771 -1.6007 -0.9545 46 1 3.8982 -0.2079 0.1590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197894703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:42 Heat of formation + Delta-G solvation = 57.747325 kcal Electronic energy + Delta-G solvation = -29165.545854 eV Core-core repulsion = 25248.856284 eV Total energy + Delta-G solvation = -3916.689570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.56633 -40.65856 -39.35208 -36.84222 -35.84660 -33.84447 -32.55124 -31.80374 -31.60827 -29.99321 -29.73402 -27.70354 -27.29770 -24.07437 -23.73472 -23.19428 -21.85506 -21.43290 -21.25165 -20.30417 -19.50777 -18.23644 -17.21060 -16.88658 -16.43638 -16.15404 -15.97607 -15.92164 -15.69975 -14.60084 -14.55831 -14.41066 -14.31757 -14.19401 -14.05096 -13.57456 -13.38161 -13.28120 -13.02543 -12.82211 -12.37773 -12.19119 -12.15847 -11.73616 -11.12314 -10.92845 -10.81683 -10.59436 -10.41676 -10.25453 -10.10642 -10.05491 -10.00268 -9.88234 -9.73502 -9.61633 -9.13231 -9.00065 -8.79105 -8.56613 -8.41008 -6.17861 -4.09111 0.42192 0.55266 1.19489 2.29756 2.71673 3.21419 3.23251 3.30922 3.31885 3.32532 3.41235 3.53704 3.93090 4.01566 4.31380 4.32094 4.36203 4.48911 4.51942 4.63268 4.65078 5.00937 5.06869 5.10538 5.21775 5.27061 5.38525 5.60449 5.60758 5.71776 5.76758 6.06469 6.07831 6.29293 6.33697 6.35834 6.57672 6.61406 6.72697 6.78196 6.84439 7.01703 7.12720 7.35068 7.39849 7.55228 7.55894 7.62893 7.71556 7.78613 8.29454 8.30405 8.88005 9.47004 10.91494 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.003009 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.294416 B = 9301.699312 C =10608.809294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.489 4.489 8 C 0.013 3.987 9 C -0.114 4.114 10 C 0.152 3.848 11 H 0.084 0.916 12 N -0.728 5.728 13 C 0.589 3.411 14 O -0.524 6.524 15 C -0.082 4.082 16 C 0.064 3.936 17 N -0.497 5.497 18 C 0.211 3.789 19 N -0.441 5.441 20 C 0.132 3.868 21 C -0.070 4.070 22 C -0.149 4.149 23 C 0.102 3.898 24 N -0.475 5.475 25 C 0.103 3.897 26 C -0.148 4.148 27 C -0.112 4.112 28 C -0.019 4.019 29 H 0.265 0.735 30 H 0.008 0.992 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.386 0.614 35 H 0.184 0.816 36 H 0.202 0.798 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.141 0.859 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.140 0.860 43 H 0.050 0.950 44 H 0.037 0.963 45 H 0.021 0.979 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 -13.283 15.783 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.508 4.508 8 C -0.024 4.024 9 C -0.153 4.153 10 C 0.049 3.951 11 H 0.102 0.898 12 N -0.380 5.380 13 C 0.374 3.626 14 O -0.400 6.400 15 C -0.196 4.196 16 C -0.089 4.089 17 N -0.214 5.214 18 C -0.071 4.071 19 N -0.126 5.126 20 C 0.010 3.990 21 C -0.079 4.079 22 C -0.169 4.169 23 C -0.055 4.055 24 N -0.184 5.184 25 C -0.054 4.054 26 C -0.168 4.168 27 C -0.151 4.151 28 C -0.057 4.057 29 H 0.075 0.925 30 H 0.026 0.974 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.222 0.778 35 H 0.201 0.799 36 H 0.219 0.781 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.159 0.841 40 H 0.179 0.821 41 H 0.179 0.821 42 H 0.158 0.842 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.039 0.961 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.019 -13.729 16.117 22.010 hybrid contribution -0.521 1.671 -0.520 1.826 sum 5.498 -12.058 15.596 20.466 Atomic orbital electron populations 1.69827 1.06141 1.27012 1.49782 1.24838 0.94718 0.98603 0.94443 0.86681 0.79955 0.83193 0.78663 1.20298 1.21652 1.18952 1.20040 0.89375 0.91424 1.49999 1.19334 0.98720 0.92772 0.91609 1.21943 0.92195 0.98649 1.02468 1.21164 0.94603 0.88864 0.90432 0.89835 1.46711 1.23541 1.46016 1.21727 1.16866 0.81154 0.78772 0.85829 1.90849 1.61292 1.63682 1.24214 1.21447 0.99421 1.11045 0.87727 1.22628 0.94722 0.95452 0.96147 1.70253 1.23306 1.24067 1.03822 1.24908 0.86736 0.95700 0.99781 1.45551 1.16629 1.37828 1.12584 1.20980 0.84465 1.01484 0.92040 1.19954 0.98183 0.95756 0.93995 1.22172 0.99264 0.96550 0.98912 1.22866 0.95895 0.98488 0.88234 1.67735 1.07791 1.05389 1.37443 1.22868 0.94189 0.92724 0.95606 1.22182 1.00046 1.01017 0.93590 1.21908 0.97262 0.94999 1.00942 1.19803 0.96595 0.95501 0.93810 0.92542 0.97402 0.92014 0.94639 0.92854 0.77829 0.79856 0.78126 0.87304 0.87477 0.84123 0.82107 0.82097 0.84174 0.93157 0.94459 0.96103 0.94513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 12.73 55.43 0.71 -23.99 16 2 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 3 Si 0.89 20.53 27.53 -169.99 -4.68 15.85 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.26 -5.93 6.11 56.52 0.35 -5.59 16 7 C -0.49 -12.39 5.51 -98.92 -0.55 -12.93 16 8 C 0.01 0.32 5.97 -27.48 -0.16 0.15 16 9 C -0.11 -2.18 5.40 -26.63 -0.14 -2.32 16 10 C 0.15 2.82 2.39 -67.97 -0.16 2.66 16 11 H 0.08 1.73 7.50 -51.93 -0.39 1.35 16 12 N -0.73 -10.95 5.05 -55.13 -0.28 -11.23 16 13 C 0.59 9.48 7.75 -12.81 -0.10 9.38 16 14 O -0.52 -10.35 16.53 5.21 0.09 -10.26 16 15 C -0.08 -1.10 6.91 -82.14 -0.57 -1.66 16 16 C 0.06 0.86 11.66 -17.48 -0.20 0.66 16 17 N -0.50 -6.45 11.20 -14.43 -0.16 -6.61 16 18 C 0.21 2.16 11.62 -90.57 -1.05 1.11 16 19 N -0.44 -4.46 3.17 -115.88 -0.37 -4.83 16 20 C 0.13 0.98 4.97 -5.20 -0.03 0.96 16 21 C -0.07 -0.45 3.79 -104.32 -0.40 -0.85 16 22 C -0.15 -0.85 9.80 -39.44 -0.39 -1.24 16 23 C 0.10 0.64 11.18 -17.55 -0.20 0.44 16 24 N -0.47 -3.77 10.36 -13.25 -0.14 -3.91 16 25 C 0.10 0.67 11.18 -17.55 -0.20 0.48 16 26 C -0.15 -0.92 9.83 -39.44 -0.39 -1.31 16 27 C -0.11 -2.26 5.51 -26.61 -0.15 -2.41 16 28 C -0.02 -0.44 5.60 -27.46 -0.15 -0.59 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 1.58 7.07 -51.93 -0.37 1.22 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.39 4.63 4.46 -40.82 -0.18 4.45 16 35 H 0.18 2.31 8.06 -52.49 -0.42 1.89 16 36 H 0.20 1.55 7.35 -52.49 -0.39 1.16 16 37 H 0.11 0.80 6.98 -51.93 -0.36 0.44 16 38 H 0.11 0.70 7.62 -51.93 -0.40 0.31 16 39 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 40 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.16 0.71 8.06 -52.48 -0.42 0.28 16 42 H 0.14 0.74 8.06 -52.48 -0.42 0.31 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.04 0.84 4.59 -51.93 -0.24 0.60 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -32.03 374.47 -10.28 -42.31 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.16 Total: 2.57 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -4.92 Total: -5.55 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.24 Total: -50.56 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.68 Total: 15.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.03 -10.28 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197894703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.056 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds