Wall clock time and date at job start Sat Apr 11 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00385 * 2 1 4 4 H 1.48493 * 109.47418 * 269.99896 * 3 2 1 5 5 H 1.48506 * 109.47222 * 29.99751 * 3 2 1 6 6 H 1.48502 * 109.47291 * 149.99566 * 3 2 1 7 7 C 1.37876 * 119.99822 * 179.97438 * 2 1 3 8 8 C 1.51264 * 120.85164 * 0.02562 * 7 2 1 9 9 C 1.53236 * 108.53521 * 231.32675 * 8 7 2 10 10 C 1.52952 * 109.40334 * 305.36633 * 9 8 7 11 11 H 1.09002 * 109.41950 * 303.56633 * 10 9 8 12 12 N 1.46502 * 109.41288 * 183.70285 * 10 9 8 13 13 C 1.34780 * 119.99700 * 154.72594 * 12 10 9 14 14 O 1.21675 * 120.00422 * 354.83049 * 13 12 10 15 15 C 1.46767 * 119.99553 * 174.82776 * 13 12 10 16 16 C 1.36664 * 126.84100 * 184.64439 * 15 13 12 17 17 N 1.33315 * 107.78521 * 180.02562 * 16 15 13 18 18 C 1.30859 * 109.68521 * 0.02562 * 17 16 15 19 19 N 1.34494 * 109.16428 * 359.72691 * 18 17 16 20 20 C 1.46496 * 126.47317 * 180.29624 * 19 18 17 21 21 C 1.50695 * 109.47525 * 4.22994 * 20 19 18 22 22 C 1.38652 * 120.79304 * 264.78982 * 21 20 19 23 23 C 1.38200 * 119.16301 * 179.75509 * 22 21 20 24 24 N 1.31871 * 120.76293 * 0.52776 * 23 22 21 25 25 C 1.31872 * 121.72672 * 359.74355 * 24 23 22 26 26 C 1.38200 * 120.76125 * 359.97438 * 25 24 23 27 27 C 1.52964 * 109.81525 * 63.60277 * 10 9 8 28 28 C 1.51278 * 120.84969 * 179.97438 * 7 2 1 29 29 H 0.97001 * 119.99586 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.63276 * 111.60846 * 8 7 2 31 31 H 1.08999 * 109.62407 * 351.03360 * 8 7 2 32 32 H 1.09003 * 109.48299 * 185.38889 * 9 8 7 33 33 H 1.08996 * 109.49480 * 65.35986 * 9 8 7 34 34 H 0.97001 * 119.99955 * 335.00903 * 12 10 9 35 35 H 1.07996 * 126.10738 * 0.02562 * 16 15 13 36 36 H 1.08001 * 125.41856 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.47077 * 124.23638 * 20 19 18 38 38 H 1.09005 * 109.46867 * 244.23206 * 20 19 18 39 39 H 1.08002 * 120.41788 * 359.97438 * 22 21 20 40 40 H 1.07997 * 119.61932 * 180.29175 * 23 22 21 41 41 H 1.08003 * 119.61576 * 180.02562 * 25 24 23 42 42 H 1.08004 * 120.41755 * 180.02562 * 26 25 24 43 43 H 1.09002 * 109.48231 * 56.37817 * 27 10 9 44 44 H 1.09000 * 109.48191 * 176.41852 * 27 10 9 45 45 H 1.09001 * 109.62324 * 248.38969 * 28 7 2 46 46 H 1.08996 * 109.62394 * 8.95571 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 6 1.2676 -2.5151 0.0005 9 6 1.8228 -3.3825 1.1352 10 6 3.3397 -3.5070 0.9841 11 1 3.5738 -3.9112 -0.0008 12 7 3.8596 -4.4075 2.0162 13 6 5.0143 -5.0718 1.8114 14 8 5.5763 -4.9976 0.7347 15 6 5.5939 -5.8847 2.8872 16 6 6.7929 -6.5401 2.8639 17 7 6.9418 -7.1583 4.0357 18 6 5.8997 -6.9259 4.7923 19 7 5.0382 -6.1362 4.1267 20 6 3.7523 -5.6388 4.6217 21 6 3.5682 -6.0623 6.0562 22 6 2.8594 -7.2115 6.3716 23 6 2.7156 -7.5712 7.6982 24 7 3.2342 -6.8303 8.6580 25 6 3.9095 -5.7285 8.3954 26 6 4.0989 -5.3091 7.0922 27 6 3.9906 -2.1310 1.1352 28 6 3.5170 -1.2165 0.0000 29 1 -0.4849 0.8401 -0.0004 30 1 1.4198 -3.0193 -0.9537 31 1 0.2036 -2.3408 0.1601 32 1 1.3705 -4.3732 1.0902 33 1 1.5897 -2.9198 2.0942 34 1 3.3707 -4.5287 2.8451 35 1 7.4944 -6.5547 2.0430 36 1 5.7563 -7.3044 5.7936 37 1 3.7351 -4.5507 4.5590 38 1 2.9456 -6.0504 4.0150 39 1 2.4282 -7.8197 5.5903 40 1 2.1690 -8.4674 7.9520 41 1 4.3200 -5.1476 9.2081 42 1 4.6533 -4.4061 6.8835 43 1 3.7062 -1.6977 2.0941 44 1 5.0747 -2.2347 1.0901 45 1 3.8771 -1.6007 -0.9545 46 1 3.8982 -0.2079 0.1590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197894703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:42 Heat of formation + Delta-G solvation = 39.135922 kcal Electronic energy + Delta-G solvation = -29166.352905 eV Core-core repulsion = 25248.856284 eV Total energy + Delta-G solvation = -3917.496621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.46551 -41.14388 -40.70148 -38.43964 -36.61869 -35.34993 -33.68117 -32.96041 -32.22305 -31.53061 -31.00640 -28.99902 -28.32578 -25.02301 -24.50427 -23.97044 -23.48817 -22.97683 -22.06320 -21.56645 -21.02500 -19.15163 -18.09745 -17.76417 -17.45833 -17.26757 -17.06267 -16.73430 -16.57036 -16.41767 -15.64604 -15.41867 -15.27082 -14.98423 -14.94402 -14.66536 -14.56088 -14.41607 -14.22679 -14.05365 -13.94257 -13.66453 -13.45062 -12.81595 -12.70250 -12.61062 -12.59411 -11.99983 -11.88572 -11.57757 -11.41729 -11.20724 -10.91588 -10.85446 -10.82818 -10.71576 -10.55250 -10.52362 -10.16041 -10.10106 -9.69274 -8.17895 -6.12141 -0.06952 0.13180 0.18481 1.38480 1.42442 1.49185 1.50729 1.74212 2.04766 2.25038 2.40398 2.80889 2.96380 3.10144 3.41249 3.53641 3.56494 3.59014 3.91705 3.95256 4.09821 4.11484 4.12584 4.18779 4.20375 4.44601 4.45754 4.62655 4.68045 4.72905 4.78479 4.84957 4.92655 4.93546 5.04624 5.05588 5.16792 5.18883 5.23282 5.34632 5.51956 5.53950 5.64083 5.66847 5.74594 5.79973 5.91113 6.33402 6.40359 6.80131 6.93528 6.96541 7.06246 7.46353 8.92353 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.003009 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.294416 B = 9301.699312 C =10608.809294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.028 3.972 3 Si 0.935 3.065 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.251 1.251 7 C -0.498 4.498 8 C 0.009 3.991 9 C -0.100 4.100 10 C 0.164 3.836 11 H 0.061 0.939 12 N -0.714 5.714 13 C 0.592 3.408 14 O -0.566 6.566 15 C -0.096 4.096 16 C 0.059 3.941 17 N -0.522 5.522 18 C 0.232 3.768 19 N -0.431 5.431 20 C 0.127 3.873 21 C -0.074 4.074 22 C -0.145 4.145 23 C 0.094 3.906 24 N -0.501 5.501 25 C 0.094 3.906 26 C -0.149 4.149 27 C -0.106 4.106 28 C -0.022 4.022 29 H 0.263 0.737 30 H -0.003 1.003 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.403 0.597 35 H 0.183 0.817 36 H 0.229 0.771 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.158 0.842 40 H 0.180 0.820 41 H 0.176 0.824 42 H 0.149 0.851 43 H 0.058 0.942 44 H 0.039 0.961 45 H 0.014 0.986 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 -14.146 17.843 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.171 4.171 3 Si 0.762 3.238 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.175 1.175 7 C -0.518 4.518 8 C -0.029 4.029 9 C -0.139 4.139 10 C 0.060 3.940 11 H 0.080 0.920 12 N -0.367 5.367 13 C 0.380 3.620 14 O -0.445 6.445 15 C -0.211 4.211 16 C -0.095 4.095 17 N -0.241 5.241 18 C -0.051 4.051 19 N -0.114 5.114 20 C 0.006 3.994 21 C -0.083 4.083 22 C -0.165 4.165 23 C -0.063 4.063 24 N -0.210 5.210 25 C -0.063 4.063 26 C -0.169 4.169 27 C -0.144 4.144 28 C -0.060 4.060 29 H 0.073 0.927 30 H 0.016 0.984 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.243 0.757 35 H 0.200 0.800 36 H 0.246 0.754 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.176 0.824 40 H 0.197 0.803 41 H 0.193 0.807 42 H 0.167 0.833 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.032 0.968 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.548 -14.599 18.222 24.249 hybrid contribution -0.707 1.847 -1.128 2.277 sum 5.842 -12.751 17.094 22.112 Atomic orbital electron populations 1.69943 1.07450 1.27484 1.51811 1.25522 0.95307 1.01495 0.94797 0.85893 0.79436 0.79959 0.78524 1.20499 1.21671 1.17521 1.20578 0.90762 0.92010 1.48408 1.19292 0.97379 0.93289 0.92970 1.21708 0.92381 0.99091 1.00698 1.20750 0.94124 0.88628 0.90504 0.92044 1.46373 1.23514 1.45156 1.21654 1.17097 0.80724 0.78404 0.85809 1.90830 1.62384 1.65171 1.26114 1.20932 0.99821 1.11894 0.88488 1.22753 0.94877 0.95368 0.96545 1.70269 1.24799 1.25034 1.03976 1.25376 0.85603 0.94039 1.00054 1.45599 1.17311 1.37203 1.11281 1.21195 0.83419 1.01823 0.92945 1.19888 0.98863 0.96266 0.93243 1.22354 0.98641 0.96294 0.99179 1.23229 0.95787 0.98949 0.88286 1.67749 1.08608 1.06196 1.38480 1.23159 0.94112 0.92658 0.96338 1.22302 0.99934 1.01260 0.93440 1.21788 0.97429 0.95251 0.99975 1.19806 0.95135 0.96304 0.94720 0.92743 0.98430 0.94601 0.92094 0.92105 0.75742 0.79976 0.75441 0.86881 0.86102 0.82416 0.80314 0.80653 0.83311 0.92365 0.94194 0.96766 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.27 12.73 21.45 0.27 -52.00 16 2 C 0.03 1.46 5.46 84.66 0.46 1.92 16 3 Si 0.94 41.94 27.53 68.60 1.89 43.83 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.25 -10.59 6.11 99.48 0.61 -9.98 16 7 C -0.50 -25.20 5.51 -16.17 -0.09 -25.29 16 8 C 0.01 0.41 5.97 30.11 0.18 0.59 16 9 C -0.10 -3.67 5.40 30.66 0.17 -3.51 16 10 C 0.16 5.86 2.39 44.96 0.11 5.96 16 11 H 0.06 2.52 7.50 -2.39 -0.02 2.50 16 12 N -0.71 -19.94 5.05 -446.55 -2.25 -22.19 16 13 C 0.59 18.27 7.75 86.47 0.67 18.94 16 14 O -0.57 -22.18 16.53 -4.27 -0.07 -22.25 16 15 C -0.10 -2.41 6.91 40.01 0.28 -2.14 16 16 C 0.06 1.52 11.66 84.10 0.98 2.50 16 17 N -0.52 -12.57 11.20 -199.57 -2.24 -14.80 16 18 C 0.23 4.08 11.62 180.33 2.10 6.18 16 19 N -0.43 -7.50 3.17 -520.53 -1.65 -9.15 16 20 C 0.13 1.47 4.97 85.63 0.43 1.89 16 21 C -0.07 -0.72 3.79 -19.67 -0.07 -0.79 16 22 C -0.14 -1.20 9.80 22.36 0.22 -0.98 16 23 C 0.09 0.94 11.18 84.68 0.95 1.88 16 24 N -0.50 -6.93 10.36 -195.85 -2.03 -8.95 16 25 C 0.09 1.02 11.18 84.68 0.95 1.97 16 26 C -0.15 -1.45 9.83 22.36 0.22 -1.23 16 27 C -0.11 -4.09 5.51 30.67 0.17 -3.92 16 28 C -0.02 -0.97 5.60 30.12 0.17 -0.81 16 29 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.04 1.86 7.07 -2.39 -0.02 1.85 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.40 8.44 4.46 -92.71 -0.41 8.03 16 35 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.23 2.66 7.35 -2.91 -0.02 2.64 16 37 H 0.11 1.27 6.98 -2.39 -0.02 1.25 16 38 H 0.12 1.12 7.62 -2.38 -0.02 1.10 16 39 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 41 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.04 1.65 4.59 -2.39 -0.01 1.64 16 Total: -1.00 -69.59 374.47 2.29 -67.29 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.50 Total: 15.04 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 7.87 Total: 3.18 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -7.90 Total: -107.09 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.07 Total: -22.25 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.89 Total: 43.83 kcal Total: -69.59 2.29 -67.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197894703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.429 kcal (2) G-P(sol) polarization free energy of solvation -69.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds