Wall clock time and date at job start Sat Apr 11 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48495 * 109.47104 * 239.99775 * 3 2 1 5 5 H 1.48508 * 109.46809 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47546 * 119.99556 * 3 2 1 7 7 C 1.37872 * 120.00387 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.84639 * 0.02562 * 7 2 1 9 9 C 1.53236 * 108.53869 * 231.32301 * 8 7 2 10 10 C 1.52954 * 109.40680 * 305.37815 * 9 8 7 11 11 H 1.09008 * 109.41468 * 303.56379 * 10 9 8 12 12 N 1.46498 * 109.41549 * 183.70206 * 10 9 8 13 13 C 1.34776 * 120.00139 * 154.99725 * 12 10 9 14 14 O 1.21626 * 119.99914 * 0.02562 * 13 12 10 15 15 C 1.47326 * 120.00022 * 179.97438 * 13 12 10 16 16 C 1.36420 * 126.23459 * 180.28332 * 15 13 12 17 17 N 1.35378 * 106.86938 * 180.16031 * 16 15 13 18 18 C 1.46502 * 126.13391 * 179.85293 * 17 16 15 19 19 C 1.50703 * 109.46792 * 269.70703 * 18 17 16 20 20 C 1.38654 * 120.78409 * 90.00088 * 19 18 17 21 21 C 1.38209 * 119.15786 * 180.02562 * 20 19 18 22 22 N 1.31870 * 120.76375 * 0.26353 * 21 20 19 23 23 C 1.31872 * 121.72489 * 359.46946 * 22 21 20 24 24 C 1.38200 * 120.76402 * 0.52682 * 23 22 21 25 25 C 1.35846 * 107.72925 * 359.58367 * 17 16 15 26 26 N 1.30169 * 109.00253 * 0.26580 * 25 17 16 27 27 C 1.52965 * 109.81890 * 63.59183 * 10 9 8 28 28 C 1.51266 * 120.85375 * 179.97438 * 7 2 1 29 29 H 0.96998 * 120.00372 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.62291 * 111.61607 * 8 7 2 31 31 H 1.09001 * 109.62733 * 351.04116 * 8 7 2 32 32 H 1.09000 * 109.48369 * 185.39634 * 9 8 7 33 33 H 1.09004 * 109.47420 * 65.35455 * 9 8 7 34 34 H 0.97003 * 119.99696 * 334.99968 * 12 10 9 35 35 H 1.08000 * 126.56611 * 0.03712 * 16 15 13 36 36 H 1.08996 * 109.46984 * 149.71456 * 18 17 16 37 37 H 1.08997 * 109.47513 * 29.71137 * 18 17 16 38 38 H 1.07996 * 120.42251 * 0.02562 * 20 19 18 39 39 H 1.08002 * 119.61346 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.61160 * 180.27376 * 23 22 21 41 41 H 1.08003 * 120.41583 * 179.72635 * 24 23 22 42 42 H 1.08001 * 125.49688 * 180.28669 * 25 17 16 43 43 H 1.09001 * 109.47769 * 56.38382 * 27 10 9 44 44 H 1.08998 * 109.48201 * 176.42397 * 27 10 9 45 45 H 1.09001 * 109.62575 * 248.38830 * 28 7 2 46 46 H 1.08999 * 109.62435 * 8.95905 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8229 -3.3826 1.1352 10 6 3.3398 -3.5069 0.9842 11 1 3.5741 -3.9110 -0.0008 12 7 3.8597 -4.4074 2.0162 13 6 5.0173 -5.0674 1.8137 14 8 5.6305 -4.9151 0.7745 15 6 5.5404 -5.9726 2.8518 16 6 6.6951 -6.6958 2.7837 17 7 6.7925 -7.3903 3.9417 18 6 7.8739 -8.3072 4.3108 19 6 7.5270 -9.7017 3.8566 20 6 7.8964 -10.1506 2.5979 21 6 7.5604 -11.4356 2.2158 22 7 6.8925 -12.2287 3.0305 23 6 6.5294 -11.8371 4.2363 24 6 6.8303 -10.5659 4.6872 25 6 5.7107 -7.0800 4.7025 26 7 4.9640 -6.2346 4.0526 27 6 3.9906 -2.1309 1.1353 28 6 3.5170 -1.2164 0.0000 29 1 -0.4850 0.8400 -0.0004 30 1 1.4201 -3.0192 -0.9538 31 1 0.2036 -2.3408 0.1600 32 1 1.3706 -4.3733 1.0900 33 1 1.5897 -2.9196 2.0940 34 1 3.3708 -4.5287 2.8451 35 1 7.3962 -6.7127 1.9624 36 1 8.0034 -8.2993 5.3930 37 1 8.7997 -7.9888 3.8317 38 1 8.4399 -9.5044 1.9245 39 1 7.8441 -11.7927 1.2368 40 1 5.9870 -12.5165 4.8772 41 1 6.5263 -10.2496 5.6742 42 1 5.5038 -7.4712 5.6876 43 1 3.7061 -1.6976 2.0942 44 1 5.0747 -2.2345 1.0902 45 1 3.8771 -1.6006 -0.9544 46 1 3.8981 -0.2077 0.1590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199419356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:46 Heat of formation + Delta-G solvation = 47.836733 kcal Electronic energy + Delta-G solvation = -28090.789121 eV Core-core repulsion = 24173.669795 eV Total energy + Delta-G solvation = -3917.119326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.45458 -40.64764 -39.08653 -36.60841 -35.61972 -33.58170 -32.50112 -31.81762 -31.42349 -29.93284 -29.57816 -27.89908 -26.92761 -24.16489 -23.58560 -22.92490 -21.79558 -21.41760 -21.16434 -19.73045 -19.39908 -18.15318 -17.36381 -16.94821 -16.33642 -16.31164 -15.70328 -15.60821 -15.45288 -14.50233 -14.46381 -14.40178 -14.28753 -14.16769 -13.93611 -13.50934 -13.29378 -13.20526 -12.99936 -12.65272 -12.17095 -12.14729 -11.98111 -11.54375 -10.92456 -10.73633 -10.65372 -10.61788 -10.32406 -10.24070 -10.12994 -9.95593 -9.91276 -9.74002 -9.71889 -9.59201 -8.92562 -8.84784 -8.71611 -8.42222 -8.18960 -6.05090 -3.95290 0.45909 0.54942 1.50903 2.33667 2.34776 3.27056 3.34086 3.39908 3.42533 3.69693 3.76823 3.79551 3.86494 3.92340 4.31640 4.37049 4.41640 4.44041 4.49639 4.56972 4.65671 5.00158 5.10196 5.17790 5.22723 5.29934 5.35788 5.54829 5.78919 5.83347 5.98128 6.08083 6.25594 6.31031 6.57033 6.59836 6.72046 6.81018 6.88723 6.97623 7.05452 7.13197 7.32955 7.40031 7.49828 7.58936 7.70824 7.78353 7.85910 8.14152 8.44122 8.70587 9.01560 9.60076 11.04631 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026452 B = 0.001983 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.279307 B =14118.760638 C =14279.942892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.488 4.488 8 C 0.013 3.987 9 C -0.114 4.114 10 C 0.154 3.846 11 H 0.078 0.922 12 N -0.707 5.707 13 C 0.595 3.405 14 O -0.551 6.551 15 C -0.050 4.050 16 C 0.029 3.971 17 N -0.457 5.457 18 C 0.146 3.854 19 C -0.074 4.074 20 C -0.151 4.151 21 C 0.102 3.898 22 N -0.479 5.479 23 C 0.100 3.900 24 C -0.153 4.153 25 C 0.185 3.815 26 N -0.459 5.459 27 C -0.113 4.113 28 C -0.008 4.008 29 H 0.264 0.736 30 H 0.006 0.994 31 H 0.061 0.939 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.402 0.598 35 H 0.186 0.814 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.138 0.862 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.138 0.862 42 H 0.209 0.791 43 H 0.051 0.949 44 H 0.037 0.963 45 H 0.021 0.979 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.350 -22.225 13.109 31.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.507 4.507 8 C -0.025 4.025 9 C -0.153 4.153 10 C 0.052 3.948 11 H 0.096 0.904 12 N -0.355 5.355 13 C 0.380 3.620 14 O -0.429 6.429 15 C -0.179 4.179 16 C -0.108 4.108 17 N -0.140 5.140 18 C 0.024 3.976 19 C -0.083 4.083 20 C -0.172 4.172 21 C -0.055 4.055 22 N -0.188 5.188 23 C -0.057 4.057 24 C -0.173 4.173 25 C -0.099 4.099 26 N -0.177 5.177 27 C -0.152 4.152 28 C -0.047 4.047 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.203 0.797 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.156 0.844 39 H 0.177 0.823 40 H 0.177 0.823 41 H 0.156 0.844 42 H 0.225 0.775 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.039 0.961 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 16.710 -22.527 12.381 30.659 hybrid contribution 1.198 1.304 0.624 1.878 sum 17.908 -21.223 13.006 30.664 Atomic orbital electron populations 1.69817 1.06108 1.26992 1.49948 1.24829 0.94732 0.98521 0.94581 0.86653 0.79369 0.83000 0.79026 1.20015 1.21934 1.20015 1.20047 0.89342 0.91509 1.49816 1.19344 0.98694 0.92737 0.91694 1.21929 0.92329 0.98655 1.02345 1.21065 0.94522 0.88905 0.90334 0.90384 1.46213 1.22998 1.44669 1.21640 1.16920 0.81245 0.79079 0.84778 1.90780 1.59029 1.65966 1.27107 1.20828 0.96329 1.05376 0.95355 1.22564 1.00732 0.96749 0.90773 1.45380 1.20049 1.33660 1.14925 1.20783 0.89423 0.84511 1.02899 1.20371 0.97664 0.95401 0.94863 1.22136 1.01045 0.97854 0.96124 1.22861 0.93360 0.90156 0.99109 1.67714 1.09925 1.36921 1.04191 1.22845 0.96136 0.94245 0.92441 1.22080 0.98938 0.95159 1.01133 1.25159 0.85513 0.99638 0.99542 1.70645 1.28205 1.14162 1.04705 1.21913 0.97306 0.95229 1.00767 1.19608 0.96580 0.94501 0.93971 0.92580 0.97537 0.92066 0.94556 0.92648 0.76363 0.79657 0.87096 0.87329 0.84380 0.82271 0.82340 0.84422 0.77467 0.93001 0.94446 0.96097 0.95677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 12.73 55.43 0.71 -25.20 16 2 C 0.08 2.11 5.46 -17.82 -0.10 2.02 16 3 Si 0.89 21.82 26.80 -169.99 -4.56 17.26 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.49 -13.17 5.51 -98.93 -0.55 -13.71 16 8 C 0.01 0.33 5.97 -27.48 -0.16 0.17 16 9 C -0.11 -2.47 5.40 -26.63 -0.14 -2.61 16 10 C 0.15 3.25 2.35 -67.97 -0.16 3.09 16 11 H 0.08 1.78 7.58 -51.92 -0.39 1.38 16 12 N -0.71 -13.00 5.07 -54.95 -0.28 -13.28 16 13 C 0.59 10.89 7.77 -12.56 -0.10 10.80 16 14 O -0.55 -11.57 16.54 5.25 0.09 -11.48 16 15 C -0.05 -0.74 6.98 -83.09 -0.58 -1.32 16 16 C 0.03 0.32 11.26 -16.64 -0.19 0.14 16 17 N -0.46 -3.53 2.71 -119.65 -0.32 -3.85 16 18 C 0.15 0.54 6.29 -5.19 -0.03 0.51 16 19 C -0.07 -0.38 5.50 -104.32 -0.57 -0.95 16 20 C -0.15 -0.87 9.82 -39.44 -0.39 -1.25 16 21 C 0.10 0.70 11.18 -17.55 -0.20 0.50 16 22 N -0.48 -4.02 10.36 -13.25 -0.14 -4.16 16 23 C 0.10 0.63 11.18 -17.55 -0.20 0.44 16 24 C -0.15 -0.74 9.82 -39.45 -0.39 -1.13 16 25 C 0.18 1.65 12.55 -89.91 -1.13 0.52 16 26 N -0.46 -6.11 11.01 -11.03 -0.12 -6.23 16 27 C -0.11 -2.52 5.50 -26.60 -0.15 -2.66 16 28 C -0.01 -0.21 5.60 -27.46 -0.15 -0.36 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 1.68 7.07 -51.93 -0.37 1.31 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.40 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.11 0.14 8.10 -51.93 -0.42 -0.29 16 37 H 0.11 0.25 8.10 -51.93 -0.42 -0.17 16 38 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 39 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.16 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.14 0.31 8.06 -52.48 -0.42 -0.12 16 42 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.60 5.17 -51.93 -0.27 0.34 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -35.31 384.54 -10.43 -45.73 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.42 Total: 1.26 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -5.18 Total: -5.83 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.16 Total: -52.73 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.56 Total: 17.26 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.31 -10.43 -45.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199419356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.570 kcal (2) G-P(sol) polarization free energy of solvation -35.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds