Wall clock time and date at job start Sat Apr 11 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86801 * 119.99843 * 2 1 4 4 H 1.48505 * 109.47086 * 269.99934 * 3 2 1 5 5 H 1.48503 * 109.47131 * 29.99281 * 3 2 1 6 6 H 1.48498 * 109.47360 * 149.99808 * 3 2 1 7 7 C 1.39948 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99718 * 197.96362 * 7 2 1 9 9 C 1.41008 * 120.00194 * 17.95558 * 7 2 1 10 10 C 1.40944 * 120.12101 * 204.68839 * 9 7 2 11 11 C 1.36225 * 119.87787 * 180.02562 * 10 9 7 12 12 C 1.39953 * 120.12528 * 0.02562 * 11 10 9 13 13 C 1.47974 * 119.88766 * 179.97438 * 12 11 10 14 14 C 1.36910 * 126.95930 * 180.27695 * 13 12 11 15 15 N 1.35085 * 106.00273 * 180.08509 * 14 13 12 16 16 C 1.46504 * 125.71460 * 179.90798 * 15 14 13 17 17 C 1.53000 * 109.47128 * 124.71788 * 16 15 14 18 18 H 1.09004 * 109.80935 * 305.70322 * 17 16 15 19 19 C 1.54673 * 109.81308 * 184.85297 * 17 16 15 20 20 C 1.53912 * 101.92314 * 220.46660 * 19 17 16 21 21 C 1.52284 * 116.48523 * 161.38223 * 20 19 17 22 22 N 1.48286 * 85.62359 * 95.99226 * 21 20 19 23 23 C 1.48285 * 91.08706 * 23.46984 * 22 21 20 24 24 C 1.53352 * 102.90644 * 32.33536 * 20 19 17 25 25 O 1.43359 * 109.81590 * 66.55355 * 17 16 15 26 26 N 1.28628 * 108.57522 * 359.64786 * 15 14 13 27 27 N 1.28606 * 110.58891 * 0.22527 * 26 15 14 28 28 C 1.39970 * 120.23263 * 0.24512 * 12 11 10 29 29 C 1.36220 * 120.11643 * 359.48727 * 28 12 11 30 30 H 0.96997 * 120.00429 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.05665 * 0.02562 * 10 9 7 32 32 H 1.08007 * 119.93738 * 179.97438 * 11 10 9 33 33 H 1.08002 * 126.99837 * 359.96328 * 14 13 12 34 34 H 1.09007 * 109.46523 * 4.72059 * 16 15 14 35 35 H 1.08992 * 109.47334 * 244.72135 * 16 15 14 36 36 H 1.08995 * 110.92679 * 338.63287 * 19 17 16 37 37 H 1.09007 * 110.92312 * 102.28374 * 19 17 16 38 38 H 1.08996 * 113.84284 * 210.16789 * 21 20 19 39 39 H 1.08999 * 113.84200 * 341.81696 * 21 20 19 40 40 H 1.00905 * 110.99729 * 270.44300 * 22 21 20 41 41 H 1.09005 * 113.85060 * 222.36015 * 23 22 21 42 42 H 1.08994 * 113.96643 * 90.71687 * 23 22 21 43 43 H 1.08997 * 110.34847 * 206.72385 * 24 20 19 44 44 H 1.09004 * 110.34809 * 84.45301 * 24 20 19 45 45 H 1.07996 * 119.93496 * 179.72817 * 28 12 11 46 46 H 1.08000 * 120.06092 * 180.22726 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5399 1.4403 0.7001 7 6 2.0082 -1.2120 0.0005 8 1 3.0487 -1.2345 0.2890 9 6 1.3547 -2.4036 -0.3754 10 6 1.8270 -3.6468 0.0915 11 6 1.1923 -4.7950 -0.2752 12 6 0.0735 -4.7419 -1.1144 13 6 -0.6117 -5.9924 -1.5098 14 6 -1.7072 -6.1092 -2.3226 15 7 -1.9769 -7.4308 -2.3964 16 6 -3.0709 -8.0391 -3.1576 17 6 -2.5036 -9.0874 -4.1168 18 1 -1.7296 -8.6383 -4.7392 19 6 -3.6352 -9.6477 -5.0101 20 6 -3.2894 -11.1467 -5.0584 21 6 -4.4091 -12.0887 -5.4805 22 7 -3.8190 -11.9988 -6.8380 23 6 -2.5012 -11.6237 -6.2710 24 6 -2.6585 -11.3973 -3.6834 25 8 -1.9535 -10.1813 -3.3711 26 7 -1.1091 -8.0661 -1.6909 27 7 -0.2802 -7.2464 -1.1478 28 6 -0.3963 -3.5104 -1.5855 29 6 0.2277 -2.3558 -1.2205 30 1 -0.4850 0.8400 -0.0004 31 1 2.6905 -3.6889 0.7388 32 1 1.5536 -5.7482 0.0817 33 1 -2.2472 -5.3077 -2.8048 34 1 -3.5896 -7.2681 -3.7275 35 1 -3.7703 -8.5157 -2.4709 36 1 -4.6101 -9.4873 -4.5498 37 1 -3.5992 -9.2068 -6.0063 38 1 -4.3411 -13.0812 -5.0353 39 1 -5.4048 -11.6521 -5.4030 40 1 -4.2208 -11.2323 -7.3569 41 1 -1.9999 -10.8222 -6.8138 42 1 -1.8492 -12.4728 -6.0667 43 1 -1.9641 -12.2360 -3.7321 44 1 -3.4327 -11.5879 -2.9401 45 1 -1.2574 -3.4753 -2.2363 46 1 -0.1378 -1.4059 -1.5816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254068001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:11 Heat of formation + Delta-G solvation = 110.468651 kcal Electronic energy + Delta-G solvation = -27991.157766 eV Core-core repulsion = 24076.754364 eV Total energy + Delta-G solvation = -3914.403402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.55939 -41.38721 -38.12994 -37.51662 -34.66002 -33.81141 -31.67738 -31.26156 -30.08757 -29.44029 -28.81931 -26.87583 -26.62130 -25.36519 -24.14852 -22.56822 -22.15686 -21.44102 -20.15466 -19.89301 -19.50490 -17.38907 -17.35454 -17.12175 -16.61474 -16.43301 -15.70999 -15.33505 -15.13776 -14.77719 -14.38175 -14.28700 -13.91814 -13.77703 -13.49909 -13.45567 -13.10448 -12.71537 -12.65025 -12.53285 -12.18913 -12.04342 -12.02526 -11.77504 -11.36476 -11.26126 -11.18704 -11.16340 -11.05816 -10.82822 -10.56981 -10.27900 -10.06558 -9.75693 -9.56713 -9.37818 -9.27571 -9.07084 -8.77804 -7.56682 -7.11312 -6.87094 -4.40327 1.97992 2.49425 2.60028 2.98005 3.02390 3.05533 3.14205 3.24791 3.47529 3.61005 3.71776 3.76022 3.84912 4.18407 4.32334 4.47741 4.51695 4.63816 4.75441 4.87437 4.89221 4.98687 5.01469 5.04510 5.09236 5.13853 5.31832 5.35799 5.40894 5.49829 5.54274 5.61355 5.70170 5.83841 6.11539 6.26003 6.47748 6.62661 6.70988 6.78513 6.95337 6.97864 7.05752 7.22543 7.32385 7.58599 7.87253 7.99122 8.09042 8.21945 8.54208 8.78540 8.89867 9.17354 10.04323 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033480 B = 0.001806 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.130878 B =15496.058824 C =15873.642416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.119 3.881 10 C -0.231 4.231 11 C -0.048 4.048 12 C -0.166 4.166 13 C 0.084 3.916 14 C -0.098 4.098 15 N -0.295 5.295 16 C 0.110 3.890 17 C 0.075 3.925 18 H 0.088 0.912 19 C -0.128 4.128 20 C -0.167 4.167 21 C 0.037 3.963 22 N -0.659 5.659 23 C 0.037 3.963 24 C 0.061 3.939 25 O -0.347 6.347 26 N -0.073 5.073 27 N -0.285 5.285 28 C -0.073 4.073 29 C -0.172 4.172 30 H 0.283 0.717 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.181 0.819 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.337 0.663 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.117 -15.791 -12.543 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.478 4.478 8 H 0.100 0.900 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.068 4.068 12 C -0.170 4.170 13 C -0.050 4.050 14 C -0.246 4.246 15 N -0.091 5.091 16 C -0.012 4.012 17 C 0.016 3.984 18 H 0.106 0.894 19 C -0.166 4.166 20 C -0.168 4.168 21 C -0.093 4.093 22 N -0.286 5.286 23 C -0.093 4.093 24 C -0.017 4.017 25 O -0.265 6.265 26 N -0.052 5.052 27 N -0.153 5.153 28 C -0.092 4.092 29 C -0.191 4.191 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.198 0.802 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.152 0.848 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.644 -17.814 -12.215 24.538 hybrid contribution -0.598 2.855 -0.135 2.920 sum -12.242 -14.959 -12.350 22.938 Atomic orbital electron populations 1.69839 1.07703 1.29566 1.33518 1.26003 0.94776 1.01605 0.92121 0.86261 0.80564 0.80211 0.79458 1.19125 1.20208 1.18429 1.19679 0.98373 0.91294 1.38418 0.90022 1.17739 0.90731 0.92122 0.87796 1.20695 1.04313 0.92725 1.07306 1.20366 0.93952 0.97073 0.95373 1.17075 1.01588 0.87708 1.10607 1.20746 0.94338 0.92993 0.96948 1.23367 1.04413 0.86377 1.10430 1.46818 1.22591 1.05575 1.34144 1.22393 0.87048 0.97113 0.94673 1.23004 0.95523 0.88567 0.91330 0.89398 1.22829 0.99289 0.93375 1.01094 1.24258 0.98617 0.96072 0.97889 1.23368 0.96535 0.99416 0.89956 1.65165 1.03420 1.45249 1.14768 1.23452 0.93225 1.00371 0.92248 1.23229 0.96184 0.88774 0.93497 1.88801 1.56641 1.15447 1.65608 1.78236 0.98447 1.21595 1.06881 1.75340 1.19622 0.99855 1.20472 1.20325 0.98054 0.92059 0.98795 1.20925 0.99834 0.96722 1.01655 0.90603 0.88645 0.88360 0.80209 0.87153 0.88504 0.89239 0.89349 0.87934 0.90399 0.84820 0.90470 0.87854 0.89289 0.91736 0.89410 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.44 10.96 55.55 0.61 -18.83 16 2 C 0.07 1.80 5.13 -17.33 -0.09 1.71 16 3 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.45 -11.58 9.03 -37.89 -0.34 -11.93 16 8 H 0.08 2.02 7.91 -52.48 -0.42 1.61 16 9 C 0.12 3.14 5.57 -106.80 -0.60 2.54 16 10 C -0.23 -5.77 9.73 -39.28 -0.38 -6.15 16 11 C -0.05 -1.17 9.64 -39.66 -0.38 -1.55 16 12 C -0.17 -3.89 5.90 -104.62 -0.62 -4.51 16 13 C 0.08 1.80 6.98 -83.11 -0.58 1.22 16 14 C -0.10 -1.68 10.96 -16.60 -0.18 -1.86 16 15 N -0.30 -4.61 3.43 -60.90 -0.21 -4.82 16 16 C 0.11 1.06 6.02 -4.04 -0.02 1.03 16 17 C 0.07 0.67 3.72 -25.85 -0.10 0.57 16 18 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.13 -0.65 5.96 -25.38 -0.15 -0.80 16 20 C -0.17 -0.94 0.99 -154.79 -0.15 -1.10 16 21 C 0.04 0.18 8.30 -3.42 -0.03 0.15 16 22 N -0.66 -3.88 8.55 -125.12 -1.07 -4.95 16 23 C 0.04 0.22 8.23 -3.42 -0.03 0.19 16 24 C 0.06 0.47 7.22 37.34 0.27 0.74 16 25 O -0.35 -4.08 10.16 -35.23 -0.36 -4.43 16 26 N -0.07 -1.42 12.13 60.35 0.73 -0.69 16 27 N -0.28 -6.31 12.15 33.06 0.40 -5.91 16 28 C -0.07 -1.67 9.51 -39.66 -0.38 -2.05 16 29 C -0.17 -4.35 8.63 -39.28 -0.34 -4.69 16 30 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 31 H 0.10 2.24 8.06 -52.48 -0.42 1.81 16 32 H 0.10 2.28 7.88 -52.48 -0.41 1.86 16 33 H 0.18 2.47 7.39 -52.49 -0.39 2.08 16 34 H 0.11 0.68 8.06 -51.92 -0.42 0.26 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.33 7.84 -51.93 -0.41 -0.07 16 37 H 0.09 0.34 8.07 -51.93 -0.42 -0.08 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.29 8.12 -51.93 -0.42 -0.14 16 40 H 0.34 1.56 8.90 -39.29 -0.35 1.21 16 41 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 42 H 0.10 0.65 8.06 -51.93 -0.42 0.23 16 43 H 0.09 0.66 8.00 -51.93 -0.42 0.24 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 1.74 7.09 -52.49 -0.37 1.36 16 46 H 0.12 3.05 6.16 -52.49 -0.32 2.72 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -32.00 380.35 -9.72 -41.72 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.43 Total: 5.71 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -4.10 Total: -26.47 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.46 Total: -35.20 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.36 Total: -4.43 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.00 -9.72 -41.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254068001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.193 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds