Wall clock time and date at job start Sat Apr 11 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86801 * 119.99843 * 2 1 4 4 H 1.48505 * 109.47086 * 269.99934 * 3 2 1 5 5 H 1.48503 * 109.47131 * 29.99281 * 3 2 1 6 6 H 1.48498 * 109.47360 * 149.99808 * 3 2 1 7 7 C 1.39948 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99718 * 197.96362 * 7 2 1 9 9 C 1.41008 * 120.00194 * 17.95558 * 7 2 1 10 10 C 1.40944 * 120.12101 * 204.68839 * 9 7 2 11 11 C 1.36225 * 119.87787 * 180.02562 * 10 9 7 12 12 C 1.39953 * 120.12528 * 0.02562 * 11 10 9 13 13 C 1.47974 * 119.88766 * 179.97438 * 12 11 10 14 14 C 1.36910 * 126.95930 * 180.27695 * 13 12 11 15 15 N 1.35085 * 106.00273 * 180.08509 * 14 13 12 16 16 C 1.46504 * 125.71460 * 179.90798 * 15 14 13 17 17 C 1.53000 * 109.47128 * 124.71788 * 16 15 14 18 18 H 1.09004 * 109.80935 * 305.70322 * 17 16 15 19 19 C 1.54673 * 109.81308 * 184.85297 * 17 16 15 20 20 C 1.53912 * 101.92314 * 220.46660 * 19 17 16 21 21 C 1.52284 * 116.48523 * 161.38223 * 20 19 17 22 22 N 1.48286 * 85.62359 * 95.99226 * 21 20 19 23 23 C 1.48285 * 91.08706 * 23.46984 * 22 21 20 24 24 C 1.53352 * 102.90644 * 32.33536 * 20 19 17 25 25 O 1.43359 * 109.81590 * 66.55355 * 17 16 15 26 26 N 1.28628 * 108.57522 * 359.64786 * 15 14 13 27 27 N 1.28606 * 110.58891 * 0.22527 * 26 15 14 28 28 C 1.39970 * 120.23263 * 0.24512 * 12 11 10 29 29 C 1.36220 * 120.11643 * 359.48727 * 28 12 11 30 30 H 0.96997 * 120.00429 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.05665 * 0.02562 * 10 9 7 32 32 H 1.08007 * 119.93738 * 179.97438 * 11 10 9 33 33 H 1.08002 * 126.99837 * 359.96328 * 14 13 12 34 34 H 1.09007 * 109.46523 * 4.72059 * 16 15 14 35 35 H 1.08992 * 109.47334 * 244.72135 * 16 15 14 36 36 H 1.08995 * 110.92679 * 338.63287 * 19 17 16 37 37 H 1.09007 * 110.92312 * 102.28374 * 19 17 16 38 38 H 1.08996 * 113.84284 * 210.16789 * 21 20 19 39 39 H 1.08999 * 113.84200 * 341.81696 * 21 20 19 40 40 H 1.00905 * 110.99729 * 270.44300 * 22 21 20 41 41 H 1.09005 * 113.85060 * 222.36015 * 23 22 21 42 42 H 1.08994 * 113.96643 * 90.71687 * 23 22 21 43 43 H 1.08997 * 110.34847 * 206.72385 * 24 20 19 44 44 H 1.09004 * 110.34809 * 84.45301 * 24 20 19 45 45 H 1.07996 * 119.93496 * 179.72817 * 28 12 11 46 46 H 1.08000 * 120.06092 * 180.22726 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5399 1.4403 0.7001 7 6 2.0082 -1.2120 0.0005 8 1 3.0487 -1.2345 0.2890 9 6 1.3547 -2.4036 -0.3754 10 6 1.8270 -3.6468 0.0915 11 6 1.1923 -4.7950 -0.2752 12 6 0.0735 -4.7419 -1.1144 13 6 -0.6117 -5.9924 -1.5098 14 6 -1.7072 -6.1092 -2.3226 15 7 -1.9769 -7.4308 -2.3964 16 6 -3.0709 -8.0391 -3.1576 17 6 -2.5036 -9.0874 -4.1168 18 1 -1.7296 -8.6383 -4.7392 19 6 -3.6352 -9.6477 -5.0101 20 6 -3.2894 -11.1467 -5.0584 21 6 -4.4091 -12.0887 -5.4805 22 7 -3.8190 -11.9988 -6.8380 23 6 -2.5012 -11.6237 -6.2710 24 6 -2.6585 -11.3973 -3.6834 25 8 -1.9535 -10.1813 -3.3711 26 7 -1.1091 -8.0661 -1.6909 27 7 -0.2802 -7.2464 -1.1478 28 6 -0.3963 -3.5104 -1.5855 29 6 0.2277 -2.3558 -1.2205 30 1 -0.4850 0.8400 -0.0004 31 1 2.6905 -3.6889 0.7388 32 1 1.5536 -5.7482 0.0817 33 1 -2.2472 -5.3077 -2.8048 34 1 -3.5896 -7.2681 -3.7275 35 1 -3.7703 -8.5157 -2.4709 36 1 -4.6101 -9.4873 -4.5498 37 1 -3.5992 -9.2068 -6.0063 38 1 -4.3411 -13.0812 -5.0353 39 1 -5.4048 -11.6521 -5.4030 40 1 -4.2208 -11.2323 -7.3569 41 1 -1.9999 -10.8222 -6.8138 42 1 -1.8492 -12.4728 -6.0667 43 1 -1.9641 -12.2360 -3.7321 44 1 -3.4327 -11.5879 -2.9401 45 1 -1.2574 -3.4753 -2.2363 46 1 -0.1378 -1.4059 -1.5816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254068001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:10 Heat of formation + Delta-G solvation = 88.289695 kcal Electronic energy + Delta-G solvation = -27992.119518 eV Core-core repulsion = 24076.754364 eV Total energy + Delta-G solvation = -3915.365154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.96372 -41.90927 -39.40269 -38.72329 -36.01428 -35.40669 -33.01519 -32.36103 -31.33468 -30.84944 -30.40929 -27.63343 -27.15280 -27.08912 -24.64293 -23.87549 -23.67213 -22.70011 -21.72895 -21.33149 -20.11168 -19.26298 -18.47913 -17.74166 -17.33210 -17.22086 -17.07095 -16.62276 -16.29776 -15.95118 -15.78303 -15.47269 -14.91443 -14.85636 -14.53856 -14.39185 -14.03955 -13.95065 -13.87076 -13.64699 -13.30021 -13.25814 -13.03533 -12.84942 -12.70134 -12.63814 -12.57447 -12.44277 -12.15274 -11.83084 -11.63373 -11.61283 -11.56293 -11.26329 -11.18846 -10.98745 -10.51677 -10.40400 -9.49731 -9.45894 -8.92762 -8.66524 -6.31715 0.47123 0.90420 1.21201 1.40201 1.44385 1.54008 1.54339 2.02317 2.21429 2.68750 2.81657 3.04356 3.15522 3.24073 3.48803 3.58323 3.78822 3.80444 3.85598 4.05366 4.09828 4.19715 4.35501 4.39023 4.45212 4.50292 4.55652 4.56159 4.60092 4.69152 4.71567 4.76661 4.80006 4.86868 4.94199 4.99523 5.01727 5.12508 5.14111 5.22894 5.35866 5.43806 5.70882 5.79826 6.01266 6.02736 6.08271 6.21464 6.34276 6.37100 6.64637 6.89128 7.00076 7.70205 8.27737 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033480 B = 0.001806 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.130878 B =15496.058824 C =15873.642416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.037 3.963 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.487 4.487 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.247 4.247 11 C -0.064 4.064 12 C -0.160 4.160 13 C 0.040 3.960 14 C -0.064 4.064 15 N -0.278 5.278 16 C 0.096 3.904 17 C 0.072 3.928 18 H 0.072 0.928 19 C -0.113 4.113 20 C -0.158 4.158 21 C 0.043 3.957 22 N -0.671 5.671 23 C 0.031 3.969 24 C 0.055 3.945 25 O -0.387 6.387 26 N -0.092 5.092 27 N -0.325 5.325 28 C -0.069 4.069 29 C -0.189 4.189 30 H 0.293 0.707 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.223 0.777 34 H 0.156 0.844 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.346 0.654 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.126 0.874 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.059 -15.546 -14.575 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.515 4.515 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.266 4.266 11 C -0.083 4.083 12 C -0.164 4.164 13 C -0.096 4.096 14 C -0.214 4.214 15 N -0.073 5.073 16 C -0.024 4.024 17 C 0.013 3.987 18 H 0.090 0.910 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.087 4.087 22 N -0.298 5.298 23 C -0.098 4.098 24 C -0.022 4.022 25 O -0.307 6.307 26 N -0.071 5.071 27 N -0.192 5.192 28 C -0.089 4.089 29 C -0.208 4.208 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.240 0.760 34 H 0.174 0.826 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.161 0.839 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.143 0.857 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.611 -17.629 -14.260 26.974 hybrid contribution 0.170 2.505 0.408 2.544 sum -14.440 -15.124 -13.851 25.082 Atomic orbital electron populations 1.69860 1.08971 1.31034 1.33741 1.26805 0.95558 1.04544 0.91054 0.85156 0.78997 0.75605 0.79697 1.18380 1.19001 1.18458 1.19876 0.98545 0.92491 1.40602 0.90461 1.18078 0.91841 0.92731 0.88833 1.20815 1.04842 0.93030 1.07927 1.20501 0.94830 0.96745 0.96234 1.17331 1.00797 0.89113 1.09142 1.20722 0.96767 0.92186 0.99926 1.23886 1.02203 0.87766 1.07495 1.47323 1.22315 1.05207 1.32479 1.23086 0.85573 0.98684 0.95038 1.23067 0.96423 0.87921 0.91307 0.91020 1.22822 0.98719 0.92236 1.01335 1.24206 0.98696 0.96904 0.96115 1.23402 0.97025 0.99231 0.89008 1.65141 1.03340 1.45868 1.15481 1.23445 0.93468 1.00159 0.92765 1.23354 0.96166 0.87539 0.95120 1.88766 1.58220 1.17159 1.66515 1.78163 0.99323 1.21577 1.08002 1.75280 1.21334 1.00553 1.21992 1.20600 0.98679 0.90949 0.98652 1.20961 1.00265 0.97322 1.02275 0.89644 0.88538 0.88346 0.76027 0.82589 0.87008 0.86855 0.87511 0.88127 0.88508 0.83871 0.90434 0.88788 0.89909 0.91047 0.85656 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.72 10.96 21.83 0.24 -40.48 16 2 C 0.04 1.82 5.13 85.26 0.44 2.26 16 3 Si 0.99 36.90 29.60 68.60 2.03 38.93 16 4 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 5 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 6 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 7 C -0.49 -26.05 9.03 23.36 0.21 -25.84 16 8 H 0.08 4.02 7.91 -2.91 -0.02 3.99 16 9 C 0.09 4.81 5.57 -21.27 -0.12 4.69 16 10 C -0.25 -12.93 9.73 22.46 0.22 -12.71 16 11 C -0.06 -3.21 9.64 22.22 0.21 -2.99 16 12 C -0.16 -7.53 5.90 -19.86 -0.12 -7.65 16 13 C 0.04 1.67 6.98 40.98 0.29 1.96 16 14 C -0.06 -1.97 10.96 83.88 0.92 -1.05 16 15 N -0.28 -7.90 3.43 -346.60 -1.19 -9.08 16 16 C 0.10 1.44 6.02 86.38 0.52 1.96 16 17 C 0.07 1.09 3.72 31.16 0.12 1.21 16 18 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 19 C -0.11 -0.71 5.96 31.47 0.19 -0.52 16 20 C -0.16 -1.41 0.99 -52.16 -0.05 -1.46 16 21 C 0.04 0.29 8.30 85.80 0.71 1.01 16 22 N -0.67 -6.36 8.55 -549.77 -4.70 -11.05 16 23 C 0.03 0.33 8.23 85.80 0.71 1.04 16 24 C 0.06 0.80 7.22 72.10 0.52 1.32 16 25 O -0.39 -8.72 10.16 -148.98 -1.51 -10.23 16 26 N -0.09 -3.51 12.13 37.02 0.45 -3.06 16 27 N -0.32 -14.45 12.15 -49.33 -0.60 -15.05 16 28 C -0.07 -3.14 9.51 22.22 0.21 -2.93 16 29 C -0.19 -9.70 8.63 22.46 0.19 -9.51 16 30 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 31 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 32 H 0.10 4.80 7.88 -2.91 -0.02 4.78 16 33 H 0.22 4.81 7.39 -2.91 -0.02 4.79 16 34 H 0.16 0.95 8.06 -2.38 -0.02 0.93 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 0.23 7.84 -2.39 -0.02 0.21 16 37 H 0.11 0.34 8.07 -2.38 -0.02 0.32 16 38 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.10 0.32 8.12 -2.39 -0.02 0.30 16 40 H 0.35 2.18 8.90 -89.69 -0.80 1.39 16 41 H 0.08 0.80 8.12 -2.38 -0.02 0.78 16 42 H 0.09 1.15 8.06 -2.39 -0.02 1.13 16 43 H 0.08 1.24 8.00 -2.39 -0.02 1.22 16 44 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.13 4.58 7.09 -2.91 -0.02 4.56 16 46 H 0.11 5.83 6.16 -2.91 -0.02 5.81 16 Total: -1.00 -73.98 380.35 0.10 -73.88 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.21 Total: 25.38 kcal Atomic # 6 Polarization: -54.39 SS G_CDS: 5.17 Total: -49.22 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -5.80 Total: -78.73 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -1.51 Total: -10.23 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -73.98 0.10 -73.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254068001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.169 kcal (2) G-P(sol) polarization free energy of solvation -73.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds