Wall clock time and date at job start Sat Apr 11 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86802 * 120.00176 * 2 1 4 4 H 1.48503 * 109.46738 * 269.99909 * 3 2 1 5 5 H 1.48496 * 109.47099 * 29.99708 * 3 2 1 6 6 H 1.48496 * 109.46884 * 150.00167 * 3 2 1 7 7 C 1.39956 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99630 * 197.97854 * 7 2 1 9 9 C 1.41017 * 119.99974 * 17.98032 * 7 2 1 10 10 C 1.40939 * 120.11477 * 204.69755 * 9 7 2 11 11 C 1.36231 * 119.87774 * 179.97438 * 10 9 7 12 12 C 1.39958 * 120.12090 * 0.26788 * 11 10 9 13 13 C 1.47968 * 119.88115 * 179.72620 * 12 11 10 14 14 C 1.36920 * 126.95551 * 179.71553 * 13 12 11 15 15 N 1.35086 * 106.00397 * 179.85273 * 14 13 12 16 16 C 1.46493 * 125.71414 * 180.17302 * 15 14 13 17 17 C 1.53000 * 109.47528 * 125.31065 * 16 15 14 18 18 H 1.09008 * 110.23747 * 55.54724 * 17 16 15 19 19 C 1.55198 * 110.27982 * 177.65196 * 17 16 15 20 20 C 1.53927 * 100.74020 * 153.99566 * 19 17 16 21 21 C 1.52465 * 116.04543 * 96.81012 * 20 19 17 22 22 N 1.48250 * 85.68750 * 95.17446 * 21 20 19 23 23 C 1.48243 * 91.04655 * 23.60602 * 22 21 20 24 24 C 1.52998 * 103.89763 * 327.38284 * 20 19 17 25 25 O 1.43618 * 107.13932 * 19.87985 * 24 20 19 26 26 N 1.28634 * 108.57652 * 0.41754 * 15 14 13 27 27 N 1.28609 * 110.58256 * 359.73194 * 26 15 14 28 28 C 1.39957 * 120.23320 * 359.45429 * 12 11 10 29 29 C 1.36231 * 120.12180 * 0.54909 * 28 12 11 30 30 H 0.97004 * 119.99712 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.06026 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.93617 * 179.97438 * 11 10 9 33 33 H 1.08007 * 126.99973 * 359.97438 * 14 13 12 34 34 H 1.09000 * 109.47311 * 245.31339 * 16 15 14 35 35 H 1.09000 * 109.47358 * 5.31129 * 16 15 14 36 36 H 1.09003 * 111.16877 * 271.86940 * 19 17 16 37 37 H 1.09006 * 111.15881 * 36.12861 * 19 17 16 38 38 H 1.08997 * 113.83907 * 209.36307 * 21 20 19 39 39 H 1.08999 * 113.83657 * 340.98270 * 21 20 19 40 40 H 1.00904 * 110.99871 * 270.59309 * 22 21 20 41 41 H 1.08995 * 113.84009 * 222.20124 * 23 22 21 42 42 H 1.09002 * 113.95069 * 90.59280 * 23 22 21 43 43 H 1.09001 * 109.90236 * 260.49921 * 24 20 19 44 44 H 1.09002 * 109.89744 * 139.25708 * 24 20 19 45 45 H 1.08003 * 119.94247 * 180.27668 * 28 12 11 46 46 H 1.07996 * 120.06408 * 179.70669 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0081 -1.2121 -0.0005 8 1 3.0486 -1.2350 0.2881 9 6 1.3547 -2.4033 -0.3781 10 6 1.8266 -3.6469 0.0878 11 6 1.1913 -4.7947 -0.2795 12 6 0.0753 -4.7409 -1.1224 13 6 -0.6070 -5.9913 -1.5229 14 6 -1.7061 -6.1067 -2.3312 15 7 -1.9682 -7.4291 -2.4168 16 6 -3.0590 -8.0369 -3.1828 17 6 -2.4878 -9.0837 -4.1413 18 1 -1.9012 -9.8190 -3.5906 19 6 -3.6341 -9.7817 -4.9207 20 6 -2.8904 -10.2166 -6.1963 21 6 -2.3844 -11.6547 -6.2188 22 7 -3.6453 -11.9690 -6.9323 23 6 -3.7649 -10.5658 -7.3953 24 6 -1.8458 -9.1184 -6.4051 25 8 -1.6767 -8.4500 -5.1453 26 7 -1.1026 -8.0651 -1.7091 27 7 -0.2762 -7.2457 -1.1616 28 6 -0.4010 -3.5082 -1.5832 29 6 0.2269 -2.3544 -1.2221 30 1 -0.4850 0.8401 -0.0004 31 1 2.6903 -3.6899 0.7348 32 1 1.5524 -5.7482 0.0766 33 1 -2.2513 -5.3040 -2.8055 34 1 -3.7608 -8.5147 -2.4991 35 1 -3.5761 -7.2655 -3.7535 36 1 -4.0141 -10.6443 -4.3732 37 1 -4.4361 -9.0807 -5.1524 38 1 -1.4888 -11.7971 -6.8235 39 1 -2.3111 -12.1113 -5.2318 40 1 -4.3813 -12.1990 -6.2815 41 1 -4.7771 -10.1663 -7.3335 42 1 -3.2895 -10.3753 -8.3575 43 1 -2.1965 -8.4108 -7.1565 44 1 -0.9007 -9.5605 -6.7205 45 1 -1.2652 -3.4718 -2.2299 46 1 -0.1386 -1.4040 -1.5820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254068016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:15 Heat of formation + Delta-G solvation = 108.446952 kcal Electronic energy + Delta-G solvation = -28040.608303 eV Core-core repulsion = 24126.117233 eV Total energy + Delta-G solvation = -3914.491070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.58178 -41.40994 -38.15080 -37.50998 -34.72888 -33.80663 -31.64451 -31.29597 -30.14050 -29.43056 -28.83482 -26.85393 -26.67391 -25.36659 -24.10493 -22.68963 -22.16480 -21.44014 -20.16844 -19.94529 -19.36429 -17.53072 -17.36971 -17.03842 -16.74430 -16.40861 -15.62372 -15.34139 -15.32152 -14.73909 -14.41202 -14.15646 -13.92100 -13.83043 -13.75812 -13.28711 -13.09822 -12.77100 -12.67344 -12.56886 -12.27969 -12.06222 -12.01728 -11.78667 -11.42991 -11.26533 -11.18809 -11.14318 -11.07304 -10.82505 -10.57739 -10.30314 -10.02527 -9.74781 -9.62585 -9.37293 -9.27583 -9.10755 -8.78274 -7.55247 -7.10280 -6.85879 -4.39029 1.98056 2.46560 2.57843 2.98508 3.03329 3.06441 3.15478 3.21317 3.44967 3.58612 3.63873 3.71842 3.85982 4.13202 4.45589 4.48016 4.55155 4.65007 4.72808 4.87108 4.90569 4.93766 5.00009 5.03975 5.07868 5.11888 5.29312 5.34612 5.38959 5.46893 5.53267 5.62978 5.71541 5.83401 6.10622 6.27929 6.47837 6.52664 6.69685 6.78407 6.96254 6.98902 7.03831 7.23699 7.33391 7.59814 7.88311 8.00380 8.10006 8.23108 8.55569 8.79811 8.91151 9.11211 10.05528 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027053 B = 0.001888 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.747625 B =14828.084702 C =15220.205907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.119 3.881 10 C -0.231 4.231 11 C -0.049 4.049 12 C -0.165 4.165 13 C 0.083 3.917 14 C -0.080 4.080 15 N -0.290 5.290 16 C 0.123 3.877 17 C 0.073 3.927 18 H 0.090 0.910 19 C -0.129 4.129 20 C -0.166 4.166 21 C 0.034 3.966 22 N -0.658 5.658 23 C 0.037 3.963 24 C 0.064 3.936 25 O -0.368 6.368 26 N -0.103 5.103 27 N -0.278 5.278 28 C -0.072 4.072 29 C -0.172 4.172 30 H 0.283 0.717 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.181 0.819 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.338 0.662 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 -15.607 -12.980 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.478 4.478 8 H 0.100 0.900 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.068 4.068 12 C -0.169 4.169 13 C -0.052 4.052 14 C -0.228 4.228 15 N -0.085 5.085 16 C 0.001 3.999 17 C 0.015 3.985 18 H 0.108 0.892 19 C -0.167 4.167 20 C -0.167 4.167 21 C -0.096 4.096 22 N -0.285 5.285 23 C -0.093 4.093 24 C -0.013 4.013 25 O -0.288 6.288 26 N -0.082 5.082 27 N -0.145 5.145 28 C -0.092 4.092 29 C -0.191 4.191 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.198 0.802 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.152 0.848 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.147 -17.178 -13.131 24.326 hybrid contribution -0.641 2.271 0.337 2.383 sum -11.788 -14.907 -12.794 22.910 Atomic orbital electron populations 1.69842 1.07702 1.29548 1.33532 1.26005 0.94777 1.01600 0.92123 0.86261 0.80553 0.80220 0.79462 1.19118 1.20220 1.18444 1.19676 0.98374 0.91316 1.38421 0.90037 1.17737 0.90749 0.92116 0.87783 1.20690 1.04265 0.92737 1.07345 1.20357 0.94033 0.97052 0.95367 1.17062 1.01625 0.87652 1.10567 1.20718 0.94249 0.92892 0.97321 1.23343 1.03915 0.86245 1.09336 1.46703 1.22579 1.05805 1.33452 1.22116 0.86841 0.97679 0.93309 1.23313 0.91491 0.93760 0.89946 0.89176 1.22977 0.97827 1.01419 0.94518 1.24221 0.97783 0.97526 0.97181 1.23560 0.95361 0.91312 0.99383 1.65150 1.04928 1.24602 1.33814 1.23442 0.99493 0.89090 0.97271 1.23010 0.98109 0.93363 0.86836 1.88647 1.66562 1.55539 1.18019 1.77966 0.99590 1.22488 1.08110 1.75257 1.19108 0.99962 1.20211 1.20328 0.98015 0.92037 0.98793 1.20930 0.99748 0.96757 1.01682 0.90613 0.88657 0.88406 0.80176 0.87569 0.87441 0.89187 0.89126 0.87874 0.90315 0.84770 0.90344 0.87954 0.90598 0.90831 0.89376 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.52 10.96 55.55 0.61 -18.91 16 2 C 0.07 1.81 5.13 -17.33 -0.09 1.72 16 3 Si 0.91 18.05 29.60 -169.99 -5.03 13.02 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.45 -11.64 9.03 -37.89 -0.34 -11.98 16 8 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 9 C 0.12 3.15 5.57 -106.80 -0.60 2.56 16 10 C -0.23 -5.78 9.73 -39.28 -0.38 -6.17 16 11 C -0.05 -1.18 9.64 -39.66 -0.38 -1.57 16 12 C -0.17 -3.90 5.90 -104.62 -0.62 -4.52 16 13 C 0.08 1.79 6.98 -83.12 -0.58 1.21 16 14 C -0.08 -1.40 10.96 -16.60 -0.18 -1.58 16 15 N -0.29 -4.53 3.41 -60.91 -0.21 -4.74 16 16 C 0.12 1.18 6.15 -4.05 -0.02 1.16 16 17 C 0.07 0.67 3.52 -25.57 -0.09 0.58 16 18 H 0.09 0.96 8.04 -51.92 -0.42 0.54 16 19 C -0.13 -0.68 5.90 -25.08 -0.15 -0.83 16 20 C -0.17 -0.96 0.97 -154.76 -0.15 -1.11 16 21 C 0.03 0.20 8.16 -3.35 -0.03 0.17 16 22 N -0.66 -3.87 8.55 -124.09 -1.06 -4.93 16 23 C 0.04 0.18 8.24 -3.36 -0.03 0.16 16 24 C 0.06 0.52 7.32 37.16 0.27 0.80 16 25 O -0.37 -4.39 11.04 -35.23 -0.39 -4.78 16 26 N -0.10 -1.95 12.81 60.35 0.77 -1.17 16 27 N -0.28 -6.08 12.15 33.06 0.40 -5.68 16 28 C -0.07 -1.68 9.51 -39.66 -0.38 -2.05 16 29 C -0.17 -4.38 8.63 -39.28 -0.34 -4.72 16 30 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 31 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 32 H 0.10 2.26 7.88 -52.49 -0.41 1.85 16 33 H 0.18 2.62 7.39 -52.48 -0.39 2.24 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.11 0.82 8.06 -51.93 -0.42 0.40 16 36 H 0.09 0.35 8.06 -51.93 -0.42 -0.07 16 37 H 0.09 0.38 8.04 -51.93 -0.42 -0.04 16 38 H 0.10 0.63 8.01 -51.93 -0.42 0.22 16 39 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 40 H 0.34 1.53 8.88 -39.29 -0.35 1.18 16 41 H 0.08 0.30 8.12 -51.93 -0.42 -0.12 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 44 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 45 H 0.09 1.78 7.09 -52.48 -0.37 1.41 16 46 H 0.12 3.08 6.16 -52.49 -0.32 2.75 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -31.90 381.54 -9.66 -41.56 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.42 Total: 6.06 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -4.08 Total: -26.18 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.52 Total: -35.44 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.39 Total: -4.78 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.90 -9.66 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254068016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.010 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds