Wall clock time and date at job start Sat Apr 11 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86802 * 120.00176 * 2 1 4 4 H 1.48503 * 109.46738 * 269.99909 * 3 2 1 5 5 H 1.48496 * 109.47099 * 29.99708 * 3 2 1 6 6 H 1.48496 * 109.46884 * 150.00167 * 3 2 1 7 7 C 1.39956 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99630 * 197.97854 * 7 2 1 9 9 C 1.41017 * 119.99974 * 17.98032 * 7 2 1 10 10 C 1.40939 * 120.11477 * 204.69755 * 9 7 2 11 11 C 1.36231 * 119.87774 * 179.97438 * 10 9 7 12 12 C 1.39958 * 120.12090 * 0.26788 * 11 10 9 13 13 C 1.47968 * 119.88115 * 179.72620 * 12 11 10 14 14 C 1.36920 * 126.95551 * 179.71553 * 13 12 11 15 15 N 1.35086 * 106.00397 * 179.85273 * 14 13 12 16 16 C 1.46493 * 125.71414 * 180.17302 * 15 14 13 17 17 C 1.53000 * 109.47528 * 125.31065 * 16 15 14 18 18 H 1.09008 * 110.23747 * 55.54724 * 17 16 15 19 19 C 1.55198 * 110.27982 * 177.65196 * 17 16 15 20 20 C 1.53927 * 100.74020 * 153.99566 * 19 17 16 21 21 C 1.52465 * 116.04543 * 96.81012 * 20 19 17 22 22 N 1.48250 * 85.68750 * 95.17446 * 21 20 19 23 23 C 1.48243 * 91.04655 * 23.60602 * 22 21 20 24 24 C 1.52998 * 103.89763 * 327.38284 * 20 19 17 25 25 O 1.43618 * 107.13932 * 19.87985 * 24 20 19 26 26 N 1.28634 * 108.57652 * 0.41754 * 15 14 13 27 27 N 1.28609 * 110.58256 * 359.73194 * 26 15 14 28 28 C 1.39957 * 120.23320 * 359.45429 * 12 11 10 29 29 C 1.36231 * 120.12180 * 0.54909 * 28 12 11 30 30 H 0.97004 * 119.99712 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.06026 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.93617 * 179.97438 * 11 10 9 33 33 H 1.08007 * 126.99973 * 359.97438 * 14 13 12 34 34 H 1.09000 * 109.47311 * 245.31339 * 16 15 14 35 35 H 1.09000 * 109.47358 * 5.31129 * 16 15 14 36 36 H 1.09003 * 111.16877 * 271.86940 * 19 17 16 37 37 H 1.09006 * 111.15881 * 36.12861 * 19 17 16 38 38 H 1.08997 * 113.83907 * 209.36307 * 21 20 19 39 39 H 1.08999 * 113.83657 * 340.98270 * 21 20 19 40 40 H 1.00904 * 110.99871 * 270.59309 * 22 21 20 41 41 H 1.08995 * 113.84009 * 222.20124 * 23 22 21 42 42 H 1.09002 * 113.95069 * 90.59280 * 23 22 21 43 43 H 1.09001 * 109.90236 * 260.49921 * 24 20 19 44 44 H 1.09002 * 109.89744 * 139.25708 * 24 20 19 45 45 H 1.08003 * 119.94247 * 180.27668 * 28 12 11 46 46 H 1.07996 * 120.06408 * 179.70669 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0081 -1.2121 -0.0005 8 1 3.0486 -1.2350 0.2881 9 6 1.3547 -2.4033 -0.3781 10 6 1.8266 -3.6469 0.0878 11 6 1.1913 -4.7947 -0.2795 12 6 0.0753 -4.7409 -1.1224 13 6 -0.6070 -5.9913 -1.5229 14 6 -1.7061 -6.1067 -2.3312 15 7 -1.9682 -7.4291 -2.4168 16 6 -3.0590 -8.0369 -3.1828 17 6 -2.4878 -9.0837 -4.1413 18 1 -1.9012 -9.8190 -3.5906 19 6 -3.6341 -9.7817 -4.9207 20 6 -2.8904 -10.2166 -6.1963 21 6 -2.3844 -11.6547 -6.2188 22 7 -3.6453 -11.9690 -6.9323 23 6 -3.7649 -10.5658 -7.3953 24 6 -1.8458 -9.1184 -6.4051 25 8 -1.6767 -8.4500 -5.1453 26 7 -1.1026 -8.0651 -1.7091 27 7 -0.2762 -7.2457 -1.1616 28 6 -0.4010 -3.5082 -1.5832 29 6 0.2269 -2.3544 -1.2221 30 1 -0.4850 0.8401 -0.0004 31 1 2.6903 -3.6899 0.7348 32 1 1.5524 -5.7482 0.0766 33 1 -2.2513 -5.3040 -2.8055 34 1 -3.7608 -8.5147 -2.4991 35 1 -3.5761 -7.2655 -3.7535 36 1 -4.0141 -10.6443 -4.3732 37 1 -4.4361 -9.0807 -5.1524 38 1 -1.4888 -11.7971 -6.8235 39 1 -2.3111 -12.1113 -5.2318 40 1 -4.3813 -12.1990 -6.2815 41 1 -4.7771 -10.1663 -7.3335 42 1 -3.2895 -10.3753 -8.3575 43 1 -2.1965 -8.4108 -7.1565 44 1 -0.9007 -9.5605 -6.7205 45 1 -1.2652 -3.4718 -2.2299 46 1 -0.1386 -1.4040 -1.5820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254068016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:14 Heat of formation + Delta-G solvation = 86.383837 kcal Electronic energy + Delta-G solvation = -28041.565031 eV Core-core repulsion = 24126.117233 eV Total energy + Delta-G solvation = -3915.447798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.99616 -41.94120 -39.40696 -38.76046 -36.06296 -35.44377 -33.01762 -32.39293 -31.34352 -30.88504 -30.46546 -27.63111 -27.19123 -27.10997 -24.60595 -23.97009 -23.69604 -22.76356 -21.76075 -21.32282 -20.06259 -19.26474 -18.54324 -17.80896 -17.41487 -17.29973 -17.04726 -16.56861 -16.31819 -16.02601 -15.86942 -15.48700 -14.93710 -14.78840 -14.47837 -14.38920 -14.28478 -13.93933 -13.87791 -13.65192 -13.42695 -13.30214 -13.05183 -12.86663 -12.75388 -12.71321 -12.60711 -12.45975 -12.18152 -11.85122 -11.69059 -11.59786 -11.55734 -11.23697 -11.19526 -10.96050 -10.62859 -10.42465 -9.53211 -9.46201 -8.93407 -8.66660 -6.31755 0.46421 0.85680 1.20966 1.39912 1.44077 1.50268 1.54019 2.00728 2.21356 2.59981 2.81378 2.98953 3.11683 3.15162 3.50324 3.55634 3.78626 3.80562 3.89071 4.01742 4.08812 4.20969 4.30136 4.33683 4.43905 4.49523 4.50438 4.54996 4.57249 4.67096 4.70249 4.73518 4.79088 4.81387 4.93059 4.98519 5.00994 5.10540 5.13928 5.21456 5.35255 5.43165 5.70482 5.75094 5.90717 6.00717 6.08147 6.20738 6.33799 6.36020 6.64464 6.88933 6.99828 7.62906 8.27649 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027053 B = 0.001888 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.747625 B =14828.084702 C =15220.205907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.037 3.963 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.486 4.486 8 H 0.078 0.922 9 C 0.088 3.912 10 C -0.246 4.246 11 C -0.063 4.063 12 C -0.161 4.161 13 C 0.042 3.958 14 C -0.055 4.055 15 N -0.273 5.273 16 C 0.108 3.892 17 C 0.070 3.930 18 H 0.069 0.931 19 C -0.114 4.114 20 C -0.157 4.157 21 C 0.029 3.971 22 N -0.669 5.669 23 C 0.042 3.958 24 C 0.058 3.942 25 O -0.405 6.405 26 N -0.112 5.112 27 N -0.316 5.316 28 C -0.070 4.070 29 C -0.189 4.189 30 H 0.293 0.707 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.217 0.783 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.346 0.654 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.122 0.878 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.523 -15.848 -14.570 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.515 4.515 8 H 0.096 0.904 9 C 0.085 3.915 10 C -0.265 4.265 11 C -0.082 4.082 12 C -0.164 4.164 13 C -0.094 4.094 14 C -0.205 4.205 15 N -0.067 5.067 16 C -0.012 4.012 17 C 0.012 3.988 18 H 0.087 0.913 19 C -0.152 4.152 20 C -0.159 4.159 21 C -0.101 4.101 22 N -0.297 5.297 23 C -0.087 4.087 24 C -0.019 4.019 25 O -0.325 6.325 26 N -0.090 5.090 27 N -0.182 5.182 28 C -0.090 4.090 29 C -0.208 4.208 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.233 0.767 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.162 0.838 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.140 0.860 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.980 -17.480 -14.730 26.795 hybrid contribution 0.099 2.094 0.716 2.216 sum -13.881 -15.386 -14.014 25.016 Atomic orbital electron populations 1.69867 1.08995 1.31025 1.33710 1.26820 0.95562 1.04581 0.91051 0.85151 0.79019 0.75585 0.79672 1.18450 1.18984 1.18383 1.19880 0.98569 0.92483 1.40527 0.90388 1.18078 0.91800 0.92805 0.88784 1.20820 1.04802 0.92988 1.07928 1.20502 0.94772 0.96835 0.96092 1.17317 1.00935 0.88994 1.09190 1.20669 0.96488 0.92213 1.00078 1.23786 1.02058 0.87766 1.06889 1.47197 1.22376 1.05291 1.31877 1.22809 0.85593 0.98914 0.93837 1.23339 0.92482 0.93261 0.89713 0.91342 1.22969 0.96710 1.02148 0.93370 1.24185 0.97316 0.96309 0.98074 1.23560 0.95382 0.91742 0.99405 1.65127 1.05061 1.25292 1.34207 1.23473 1.00188 0.88376 0.96673 1.23139 0.98640 0.94235 0.85846 1.88605 1.67727 1.56642 1.19572 1.77871 1.00138 1.22264 1.08776 1.75199 1.20802 1.00473 1.21750 1.20587 0.98616 0.91089 0.98676 1.20957 1.00249 0.97275 1.02369 0.89654 0.88393 0.88140 0.76689 0.84312 0.84423 0.87249 0.86906 0.88715 0.90114 0.83795 0.88528 0.88142 0.89723 0.91802 0.85983 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.00 10.96 21.83 0.24 -40.76 16 2 C 0.04 1.80 5.13 85.26 0.44 2.24 16 3 Si 0.99 37.12 29.60 68.60 2.03 39.15 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 6 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 7 C -0.49 -26.12 9.03 23.37 0.21 -25.91 16 8 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 9 C 0.09 4.85 5.57 -21.27 -0.12 4.73 16 10 C -0.25 -12.91 9.73 22.46 0.22 -12.69 16 11 C -0.06 -3.15 9.64 22.22 0.21 -2.94 16 12 C -0.16 -7.64 5.90 -19.86 -0.12 -7.76 16 13 C 0.04 1.77 6.98 40.98 0.29 2.06 16 14 C -0.05 -1.77 10.96 83.88 0.92 -0.85 16 15 N -0.27 -7.81 3.41 -346.61 -1.18 -8.99 16 16 C 0.11 1.65 6.15 86.38 0.53 2.19 16 17 C 0.07 1.11 3.52 31.35 0.11 1.22 16 18 H 0.07 1.37 8.04 -2.38 -0.02 1.35 16 19 C -0.11 -0.77 5.90 31.66 0.19 -0.59 16 20 C -0.16 -1.45 0.97 -52.16 -0.05 -1.50 16 21 C 0.03 0.30 8.16 85.87 0.70 1.00 16 22 N -0.67 -6.29 8.55 -546.50 -4.67 -10.96 16 23 C 0.04 0.30 8.24 85.86 0.71 1.01 16 24 C 0.06 0.87 7.32 71.98 0.53 1.40 16 25 O -0.41 -9.00 11.04 -148.98 -1.65 -10.64 16 26 N -0.11 -4.12 12.81 37.02 0.47 -3.64 16 27 N -0.32 -13.84 12.15 -49.33 -0.60 -14.44 16 28 C -0.07 -3.26 9.51 22.22 0.21 -3.04 16 29 C -0.19 -9.85 8.63 22.47 0.19 -9.66 16 30 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 31 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 32 H 0.10 4.86 7.88 -2.91 -0.02 4.83 16 33 H 0.22 5.29 7.39 -2.91 -0.02 5.27 16 34 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.14 1.35 8.06 -2.39 -0.02 1.33 16 36 H 0.11 0.37 8.06 -2.39 -0.02 0.35 16 37 H 0.11 0.33 8.04 -2.38 -0.02 0.31 16 38 H 0.09 1.12 8.01 -2.39 -0.02 1.10 16 39 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 40 H 0.35 2.14 8.88 -89.69 -0.80 1.34 16 41 H 0.10 0.36 8.12 -2.39 -0.02 0.34 16 42 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 44 H 0.06 1.04 7.87 -2.39 -0.02 1.02 16 45 H 0.12 4.67 7.09 -2.91 -0.02 4.65 16 46 H 0.11 5.89 6.16 -2.91 -0.02 5.87 16 Total: -1.00 -72.91 381.54 0.03 -72.88 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.21 Total: 26.51 kcal Atomic # 6 Polarization: -54.26 SS G_CDS: 5.17 Total: -49.09 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -5.74 Total: -78.80 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -1.65 Total: -10.64 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Total: -72.91 0.03 -72.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254068016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.262 kcal (2) G-P(sol) polarization free energy of solvation -72.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds