Wall clock time and date at job start Sat Apr 11 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00078 * 2 1 4 4 H 1.48500 * 109.47299 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47194 * 300.00445 * 3 2 1 6 6 H 1.48505 * 109.46832 * 60.00202 * 3 2 1 7 7 C 1.38814 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00084 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99751 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99912 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.46821 * 35.00231 * 10 9 7 12 12 C 1.52996 * 109.47024 * 154.99534 * 10 9 7 13 13 N 1.46501 * 109.47623 * 305.00116 * 12 10 9 14 14 C 1.34768 * 120.00215 * 179.97438 * 13 12 10 15 15 O 1.21582 * 120.00233 * 0.02562 * 14 13 12 16 16 C 1.47604 * 120.00012 * 180.02562 * 14 13 12 17 17 C 1.39636 * 120.19170 * 354.57268 * 16 14 13 18 18 C 1.37847 * 119.91768 * 179.97438 * 17 16 14 19 19 C 1.38516 * 120.30821 * 0.02562 * 18 17 16 20 20 C 1.38078 * 120.39139 * 359.67662 * 19 18 17 21 21 C 1.38754 * 120.07500 * 0.60601 * 20 19 18 22 22 N 1.39698 * 120.15940 * 179.69485 * 21 20 19 23 23 C 1.35857 * 126.10417 * 277.24024 * 22 21 20 24 24 C 1.35286 * 107.61178 * 179.97438 * 23 22 21 25 25 C 1.39953 * 107.97130 * 0.02562 * 24 23 22 26 26 N 1.30829 * 108.37302 * 359.97438 * 25 24 23 27 27 C 1.52998 * 109.47195 * 275.00071 * 10 9 7 28 28 C 1.52997 * 117.50258 * 128.74640 * 27 10 9 29 29 C 1.52992 * 117.50290 * 60.08307 * 27 10 9 30 30 H 0.97001 * 120.00132 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00722 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47445 * 184.99603 * 12 10 9 33 33 H 1.09010 * 109.47245 * 65.00541 * 12 10 9 34 34 H 0.97003 * 119.99607 * 0.02562 * 13 12 10 35 35 H 1.08003 * 120.03775 * 359.95294 * 17 16 14 36 36 H 1.08001 * 119.84091 * 179.97438 * 18 17 16 37 37 H 1.08001 * 119.79928 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.96503 * 180.31959 * 20 19 18 39 39 H 1.08000 * 126.19101 * 359.71336 * 23 22 21 40 40 H 1.07994 * 126.01234 * 179.97438 * 24 23 22 41 41 H 1.08004 * 125.81727 * 180.02562 * 25 24 23 42 42 H 1.09001 * 115.54628 * 274.41383 * 27 10 9 43 43 H 1.09004 * 117.49211 * 0.02562 * 28 27 10 44 44 H 1.08993 * 117.50168 * 145.01638 * 28 27 10 45 45 H 1.09000 * 117.50343 * 214.98181 * 29 27 10 46 46 H 1.09000 * 117.49654 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 1.1809 -4.7521 0.6103 13 7 0.7343 -4.3354 1.9419 14 6 -0.0555 -5.1471 2.6724 15 8 -0.3970 -6.2255 2.2265 16 6 -0.5059 -4.7271 4.0138 17 6 -0.0263 -3.5426 4.5766 18 6 -0.4511 -3.1554 5.8295 19 6 -1.3520 -3.9364 6.5344 20 6 -1.8392 -5.1070 5.9876 21 6 -1.4179 -5.5150 4.7301 22 7 -1.9047 -6.7022 4.1778 23 6 -1.4367 -7.9527 4.4285 24 6 -2.1762 -8.8203 3.7000 25 6 -3.1241 -8.0825 2.9817 26 7 -2.9629 -6.8158 3.2666 27 6 2.4220 -4.0356 -1.4364 28 6 3.8821 -4.3892 -1.7257 29 6 3.3027 -3.0622 -2.2222 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 1.7557 -5.6746 0.6919 33 1 0.3133 -4.9201 -0.0279 34 1 1.0065 -3.4749 2.2975 35 1 0.6769 -2.9307 4.0310 36 1 -0.0790 -2.2392 6.2638 37 1 -1.6790 -3.6254 7.5157 38 1 -2.5454 -5.7080 6.5412 39 1 -0.6193 -8.2077 5.0867 40 1 -2.0558 -9.8932 3.6763 41 1 -3.8632 -8.4895 2.3076 42 1 1.6541 -4.5775 -1.9885 43 1 4.5835 -4.3523 -0.8921 44 1 4.0749 -5.1634 -2.4683 45 1 3.1146 -2.9639 -3.2914 46 1 3.6226 -2.1517 -1.7156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265372819.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:18 Heat of formation + Delta-G solvation = 125.479101 kcal Electronic energy + Delta-G solvation = -29196.234032 eV Core-core repulsion = 25282.481531 eV Total energy + Delta-G solvation = -3913.752500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.27988 -39.77847 -38.40349 -37.44690 -34.74615 -33.59519 -33.19042 -31.80604 -30.66064 -29.99257 -29.03377 -27.95163 -24.53816 -23.47055 -23.31252 -22.29687 -21.72188 -20.86101 -20.66264 -20.27648 -19.57512 -18.31222 -17.55201 -17.03488 -16.19095 -15.43287 -15.24415 -15.16709 -14.94578 -14.79027 -14.42123 -14.18479 -13.92691 -13.73463 -13.57372 -13.48336 -13.18829 -12.89950 -12.72919 -12.55022 -12.15103 -12.05761 -11.64020 -11.39819 -11.19357 -10.92089 -10.89302 -10.74408 -10.58053 -10.13406 -9.97670 -9.83938 -9.55214 -9.34536 -9.26604 -9.22150 -9.09716 -9.02863 -8.62486 -8.47039 -7.09264 -5.85455 -3.15671 0.60129 0.95903 2.04719 2.61464 2.93172 3.06260 3.35114 3.40517 3.42334 3.44269 3.72072 4.37967 4.55596 4.58333 4.65643 4.78171 4.85708 5.06547 5.10788 5.13846 5.21153 5.33999 5.43324 5.48744 5.56489 5.59958 5.71436 5.72342 5.85747 5.86791 5.95338 5.98255 6.04423 6.07710 6.11549 6.15293 6.16906 6.37156 6.45343 6.51940 6.57028 6.73978 6.82863 6.86047 6.94934 7.33373 7.61217 7.86544 7.86743 8.30756 8.50617 9.43127 9.97271 10.33590 11.36109 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011108 B = 0.003448 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.000358 B = 8118.320769 C = 9823.116308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.008 4.008 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.193 3.807 11 H 0.055 0.945 12 C 0.122 3.878 13 N -0.706 5.706 14 C 0.548 3.452 15 O -0.527 6.527 16 C -0.111 4.111 17 C -0.074 4.074 18 C -0.110 4.110 19 C -0.091 4.091 20 C -0.113 4.113 21 C 0.187 3.813 22 N -0.322 5.322 23 C 0.073 3.927 24 C -0.267 4.267 25 C 0.045 3.955 26 N -0.268 5.268 27 C -0.159 4.159 28 C -0.196 4.196 29 C -0.155 4.155 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.408 0.592 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.166 0.834 40 H 0.145 0.855 41 H 0.180 0.820 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.103 -12.772 12.413 17.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.205 4.205 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.083 3.917 11 H 0.073 0.927 12 C -0.002 4.002 13 N -0.358 5.358 14 C 0.333 3.667 15 O -0.405 6.405 16 C -0.116 4.116 17 C -0.094 4.094 18 C -0.128 4.128 19 C -0.110 4.110 20 C -0.133 4.133 21 C 0.096 3.904 22 N -0.100 5.100 23 C -0.071 4.071 24 C -0.296 4.296 25 C -0.143 4.143 26 N -0.086 5.086 27 C -0.181 4.181 28 C -0.234 4.234 29 C -0.193 4.193 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.246 0.754 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.184 0.816 40 H 0.163 0.837 41 H 0.197 0.803 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.385 -12.109 11.910 16.989 hybrid contribution 0.582 0.628 -0.072 0.860 sum 0.197 -11.481 11.838 16.492 Atomic orbital electron populations 1.69674 1.05050 1.25623 1.57085 1.24724 0.95404 0.97547 1.02792 0.86210 0.78817 0.84432 0.77245 1.20573 1.21888 1.21911 1.19200 0.90843 0.83811 1.43165 0.91067 1.42479 1.05853 0.99399 1.88088 1.20053 0.94255 0.86123 0.91303 0.92720 1.21595 0.98607 0.97513 0.82527 1.45866 1.50346 1.21621 1.17959 1.18000 0.79216 0.84860 0.84580 1.90815 1.55948 1.22010 1.71711 1.20340 0.99189 0.96285 0.95750 1.21469 0.98452 0.94006 0.95440 1.21290 0.97127 1.00005 0.94406 1.21220 0.96155 0.93503 1.00116 1.21221 1.00189 0.97551 0.94351 1.17121 0.94984 0.86088 0.92180 1.45339 1.26537 1.03406 1.34711 1.22509 0.99653 0.83742 1.01166 1.21356 1.02234 1.00217 1.05798 1.23811 0.99895 0.90639 0.99956 1.77482 1.04460 1.19631 1.07065 1.23017 0.92189 1.03123 0.99768 1.22959 0.97245 0.99833 1.03346 1.22778 1.03337 0.94025 0.99111 0.93477 0.78018 0.91616 0.91736 0.75424 0.84047 0.84474 0.84649 0.84881 0.81629 0.83749 0.80327 0.89145 0.89561 0.90076 0.90205 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.50 13.06 55.49 0.72 -25.78 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -5.98 8.63 -15.06 -0.13 -6.11 16 8 H 0.07 1.74 6.91 -52.49 -0.36 1.38 16 9 N -0.72 -16.25 4.54 -53.43 -0.24 -16.49 16 10 C 0.19 3.57 2.70 -67.93 -0.18 3.38 16 11 H 0.05 1.01 7.84 -51.93 -0.41 0.60 16 12 C 0.12 2.12 5.21 -4.04 -0.02 2.10 16 13 N -0.71 -12.07 5.34 -61.33 -0.33 -12.40 16 14 C 0.55 9.77 7.75 -12.44 -0.10 9.67 16 15 O -0.53 -10.72 14.18 5.29 0.08 -10.65 16 16 C -0.11 -1.69 5.89 -104.82 -0.62 -2.31 16 17 C -0.07 -0.94 9.52 -39.20 -0.37 -1.32 16 18 C -0.11 -1.11 10.02 -39.62 -0.40 -1.51 16 19 C -0.09 -0.84 10.03 -39.54 -0.40 -1.23 16 20 C -0.11 -1.26 9.96 -39.45 -0.39 -1.65 16 21 C 0.19 2.72 6.05 -83.34 -0.50 2.22 16 22 N -0.32 -5.02 2.00 -10.37 -0.02 -5.04 16 23 C 0.07 0.97 10.96 -16.82 -0.18 0.78 16 24 C -0.27 -3.40 10.80 -39.99 -0.43 -3.83 16 25 C 0.04 0.64 12.02 -17.34 -0.21 0.43 16 26 N -0.27 -4.65 11.95 30.64 0.37 -4.28 16 27 C -0.16 -2.78 5.36 -90.63 -0.49 -3.27 16 28 C -0.20 -2.97 10.18 -26.70 -0.27 -3.24 16 29 C -0.16 -2.74 9.78 -26.70 -0.26 -3.00 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.39 9.72 7.80 -40.82 -0.32 9.40 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 34 H 0.41 6.86 6.20 -40.82 -0.25 6.61 16 35 H 0.14 1.74 6.44 -52.48 -0.34 1.40 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 40 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.18 1.95 8.06 -52.48 -0.42 1.53 16 42 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16 43 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.10 2.06 6.23 -51.93 -0.32 1.74 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -32.49 389.11 -9.84 -42.33 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -6.21 Total: 19.50 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -5.05 Total: -9.19 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: 0.50 Total: -63.99 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.49 -9.84 -42.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265372819.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.810 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds