Wall clock time and date at job start Sat Apr 11 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00078 * 2 1 4 4 H 1.48500 * 109.47299 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47194 * 300.00445 * 3 2 1 6 6 H 1.48505 * 109.46832 * 60.00202 * 3 2 1 7 7 C 1.38814 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00084 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99751 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99912 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.46821 * 35.00231 * 10 9 7 12 12 C 1.52996 * 109.47024 * 154.99534 * 10 9 7 13 13 N 1.46501 * 109.47623 * 305.00116 * 12 10 9 14 14 C 1.34768 * 120.00215 * 179.97438 * 13 12 10 15 15 O 1.21582 * 120.00233 * 0.02562 * 14 13 12 16 16 C 1.47604 * 120.00012 * 180.02562 * 14 13 12 17 17 C 1.39636 * 120.19170 * 354.57268 * 16 14 13 18 18 C 1.37847 * 119.91768 * 179.97438 * 17 16 14 19 19 C 1.38516 * 120.30821 * 0.02562 * 18 17 16 20 20 C 1.38078 * 120.39139 * 359.67662 * 19 18 17 21 21 C 1.38754 * 120.07500 * 0.60601 * 20 19 18 22 22 N 1.39698 * 120.15940 * 179.69485 * 21 20 19 23 23 C 1.35857 * 126.10417 * 277.24024 * 22 21 20 24 24 C 1.35286 * 107.61178 * 179.97438 * 23 22 21 25 25 C 1.39953 * 107.97130 * 0.02562 * 24 23 22 26 26 N 1.30829 * 108.37302 * 359.97438 * 25 24 23 27 27 C 1.52998 * 109.47195 * 275.00071 * 10 9 7 28 28 C 1.52997 * 117.50258 * 128.74640 * 27 10 9 29 29 C 1.52992 * 117.50290 * 60.08307 * 27 10 9 30 30 H 0.97001 * 120.00132 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00722 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47445 * 184.99603 * 12 10 9 33 33 H 1.09010 * 109.47245 * 65.00541 * 12 10 9 34 34 H 0.97003 * 119.99607 * 0.02562 * 13 12 10 35 35 H 1.08003 * 120.03775 * 359.95294 * 17 16 14 36 36 H 1.08001 * 119.84091 * 179.97438 * 18 17 16 37 37 H 1.08001 * 119.79928 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.96503 * 180.31959 * 20 19 18 39 39 H 1.08000 * 126.19101 * 359.71336 * 23 22 21 40 40 H 1.07994 * 126.01234 * 179.97438 * 24 23 22 41 41 H 1.08004 * 125.81727 * 180.02562 * 25 24 23 42 42 H 1.09001 * 115.54628 * 274.41383 * 27 10 9 43 43 H 1.09004 * 117.49211 * 0.02562 * 28 27 10 44 44 H 1.08993 * 117.50168 * 145.01638 * 28 27 10 45 45 H 1.09000 * 117.50343 * 214.98181 * 29 27 10 46 46 H 1.09000 * 117.49654 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 1.1809 -4.7521 0.6103 13 7 0.7343 -4.3354 1.9419 14 6 -0.0555 -5.1471 2.6724 15 8 -0.3970 -6.2255 2.2265 16 6 -0.5059 -4.7271 4.0138 17 6 -0.0263 -3.5426 4.5766 18 6 -0.4511 -3.1554 5.8295 19 6 -1.3520 -3.9364 6.5344 20 6 -1.8392 -5.1070 5.9876 21 6 -1.4179 -5.5150 4.7301 22 7 -1.9047 -6.7022 4.1778 23 6 -1.4367 -7.9527 4.4285 24 6 -2.1762 -8.8203 3.7000 25 6 -3.1241 -8.0825 2.9817 26 7 -2.9629 -6.8158 3.2666 27 6 2.4220 -4.0356 -1.4364 28 6 3.8821 -4.3892 -1.7257 29 6 3.3027 -3.0622 -2.2222 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 1.7557 -5.6746 0.6919 33 1 0.3133 -4.9201 -0.0279 34 1 1.0065 -3.4749 2.2975 35 1 0.6769 -2.9307 4.0310 36 1 -0.0790 -2.2392 6.2638 37 1 -1.6790 -3.6254 7.5157 38 1 -2.5454 -5.7080 6.5412 39 1 -0.6193 -8.2077 5.0867 40 1 -2.0558 -9.8932 3.6763 41 1 -3.8632 -8.4895 2.3076 42 1 1.6541 -4.5775 -1.9885 43 1 4.5835 -4.3523 -0.8921 44 1 4.0749 -5.1634 -2.4683 45 1 3.1146 -2.9639 -3.2914 46 1 3.6226 -2.1517 -1.7156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265372819.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:17 Heat of formation + Delta-G solvation = 106.291528 kcal Electronic energy + Delta-G solvation = -29197.066067 eV Core-core repulsion = 25282.481531 eV Total energy + Delta-G solvation = -3914.584536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.31752 -40.97201 -39.56810 -38.85909 -36.18111 -35.25648 -34.28608 -33.11884 -32.14000 -31.02875 -30.06649 -29.50221 -25.97096 -25.03580 -24.26997 -23.66275 -23.04433 -21.88533 -21.77544 -21.57088 -20.95799 -19.55782 -19.05118 -18.36135 -17.38477 -16.89292 -16.44850 -16.40636 -16.18028 -16.02908 -15.88064 -15.40571 -15.25187 -15.01299 -14.87630 -14.69365 -14.55962 -14.21511 -13.86939 -13.61475 -13.40944 -13.04189 -12.99276 -12.92752 -12.72871 -12.50678 -12.38933 -12.27727 -11.96089 -11.74571 -11.64272 -11.20345 -11.03256 -10.90417 -10.79290 -10.34244 -10.26600 -10.09101 -9.93549 -9.49088 -9.02247 -7.88990 -5.17834 -0.39041 0.06360 1.01857 1.48343 1.51002 1.58712 1.64631 1.79538 2.04437 2.13308 2.57118 2.65114 3.05491 3.46906 3.61065 3.65539 3.75804 3.91258 3.95557 3.99788 4.13098 4.13869 4.24746 4.27478 4.30206 4.35679 4.41096 4.52922 4.61413 4.71849 4.79591 4.80479 4.88069 4.88788 5.10261 5.11711 5.13732 5.15874 5.19031 5.31377 5.37844 5.42224 5.47225 5.60942 5.63459 5.85616 6.29376 6.35605 6.49525 6.81660 7.14328 7.37638 8.07268 8.33736 9.33891 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011108 B = 0.003448 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.000358 B = 8118.320769 C = 9823.116308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.068 4.068 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.304 1.304 6 H -0.295 1.295 7 C -0.219 4.219 8 H 0.079 0.921 9 N -0.724 5.724 10 C 0.199 3.801 11 H 0.061 0.939 12 C 0.133 3.867 13 N -0.705 5.705 14 C 0.543 3.457 15 O -0.560 6.560 16 C -0.142 4.142 17 C -0.082 4.082 18 C -0.105 4.105 19 C -0.070 4.070 20 C -0.112 4.112 21 C 0.162 3.838 22 N -0.330 5.330 23 C 0.064 3.936 24 C -0.270 4.270 25 C 0.036 3.964 26 N -0.324 5.324 27 C -0.176 4.176 28 C -0.160 4.160 29 C -0.171 4.171 30 H 0.247 0.753 31 H 0.371 0.629 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.409 0.591 35 H 0.138 0.862 36 H 0.168 0.832 37 H 0.179 0.821 38 H 0.150 0.850 39 H 0.193 0.807 40 H 0.173 0.827 41 H 0.202 0.798 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 -13.351 14.331 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.261 4.261 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.232 1.232 6 H -0.223 1.223 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.363 5.363 10 C 0.090 3.910 11 H 0.079 0.921 12 C 0.009 3.991 13 N -0.356 5.356 14 C 0.330 3.670 15 O -0.440 6.440 16 C -0.146 4.146 17 C -0.102 4.102 18 C -0.123 4.123 19 C -0.088 4.088 20 C -0.132 4.132 21 C 0.071 3.929 22 N -0.108 5.108 23 C -0.079 4.079 24 C -0.299 4.299 25 C -0.151 4.151 26 N -0.144 5.144 27 C -0.198 4.198 28 C -0.198 4.198 29 C -0.209 4.209 30 H 0.056 0.944 31 H 0.202 0.798 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.247 0.753 35 H 0.155 0.845 36 H 0.186 0.814 37 H 0.196 0.804 38 H 0.168 0.832 39 H 0.210 0.790 40 H 0.191 0.809 41 H 0.218 0.782 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.124 0.876 45 H 0.104 0.896 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.189 -12.715 13.831 18.825 hybrid contribution 0.145 0.724 -0.625 0.967 sum 1.334 -11.992 13.207 17.888 Atomic orbital electron populations 1.69830 1.06543 1.25558 1.59894 1.25374 0.95987 1.00443 1.04251 0.85263 0.78487 0.80890 0.76252 1.18952 1.23184 1.22267 1.19502 0.91179 0.84434 1.39943 0.90275 1.42586 1.05201 1.00441 1.88078 1.20130 0.93966 0.84591 0.92275 0.92102 1.21436 0.97629 0.97626 0.82455 1.45848 1.50442 1.21623 1.17727 1.18502 0.78513 0.84366 0.85592 1.90775 1.57087 1.23329 1.72767 1.20255 1.01353 0.98119 0.94906 1.21559 0.98674 0.93195 0.96724 1.21679 0.96532 1.00927 0.93128 1.21714 0.94125 0.91781 1.01229 1.21501 1.00135 0.98361 0.93156 1.17537 0.95552 0.86330 0.93449 1.45476 1.26362 1.04320 1.34610 1.23104 1.00137 0.83266 1.01429 1.21749 1.01487 1.01575 1.05086 1.24338 1.00534 0.90225 0.99997 1.77382 1.06490 1.21411 1.09078 1.22901 0.94037 1.04168 0.98657 1.23034 0.94934 0.98310 1.03499 1.22735 1.04530 0.94327 0.99259 0.94393 0.79771 0.90337 0.93877 0.75326 0.84454 0.81432 0.80378 0.83218 0.79001 0.80944 0.78160 0.89267 0.88403 0.87577 0.89621 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.82 13.06 21.65 0.28 -56.54 16 2 C -0.07 -3.66 5.50 84.86 0.47 -3.20 16 3 Si 0.96 43.89 29.55 68.60 2.03 45.92 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.22 -10.96 8.63 84.03 0.73 -10.24 16 8 H 0.08 3.80 6.91 -2.91 -0.02 3.78 16 9 N -0.72 -33.32 4.54 -322.94 -1.47 -34.79 16 10 C 0.20 7.33 2.70 44.99 0.12 7.46 16 11 H 0.06 2.19 7.84 -2.39 -0.02 2.17 16 12 C 0.13 4.73 5.21 86.38 0.45 5.18 16 13 N -0.70 -24.91 5.34 -466.21 -2.49 -27.40 16 14 C 0.54 20.11 7.75 86.72 0.67 20.78 16 15 O -0.56 -23.68 14.18 -3.97 -0.06 -23.74 16 16 C -0.14 -4.40 5.89 -19.99 -0.12 -4.52 16 17 C -0.08 -2.05 9.52 22.51 0.21 -1.84 16 18 C -0.10 -1.84 10.02 22.24 0.22 -1.61 16 19 C -0.07 -1.05 10.03 22.30 0.22 -0.82 16 20 C -0.11 -2.29 9.96 22.36 0.22 -2.06 16 21 C 0.16 4.70 6.05 38.49 0.23 4.94 16 22 N -0.33 -10.42 2.00 -186.72 -0.37 -10.79 16 23 C 0.06 1.67 10.96 83.39 0.91 2.58 16 24 C -0.27 -6.71 10.80 22.00 0.24 -6.47 16 25 C 0.04 1.03 12.02 85.26 1.02 2.06 16 26 N -0.32 -11.62 11.95 -56.97 -0.68 -12.30 16 27 C -0.18 -6.01 5.36 -10.80 -0.06 -6.06 16 28 C -0.16 -4.42 10.18 30.62 0.31 -4.10 16 29 C -0.17 -5.85 9.78 30.62 0.30 -5.55 16 30 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.37 19.34 7.80 -92.71 -0.72 18.62 16 32 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.41 14.20 6.20 -92.71 -0.57 13.63 16 35 H 0.14 3.41 6.44 -2.91 -0.02 3.40 16 36 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.19 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 41 H 0.20 4.42 8.06 -2.91 -0.02 4.39 16 42 H 0.09 3.07 8.11 -2.39 -0.02 3.05 16 43 H 0.10 2.51 8.05 -2.38 -0.02 2.49 16 44 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 46 H 0.08 3.21 6.23 -2.39 -0.01 3.19 16 Total: -1.00 -73.37 389.11 3.13 -70.23 By element: Atomic # 1 Polarization: 53.15 SS G_CDS: -0.28 Total: 52.88 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 6.16 Total: -3.48 kcal Atomic # 7 Polarization: -137.09 SS G_CDS: -4.73 Total: -141.81 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.06 Total: -23.74 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -73.37 3.13 -70.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265372819.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.526 kcal (2) G-P(sol) polarization free energy of solvation -73.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds