Wall clock time and date at job start Sat Apr 11 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00087 * 2 1 4 4 H 1.48491 * 109.47044 * 239.99556 * 3 2 1 5 5 H 1.48499 * 109.46637 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47082 * 119.99615 * 3 2 1 7 7 C 1.38816 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99935 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99677 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99605 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46722 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.91869 * 308.89508 * 11 10 9 13 13 C 1.55159 * 111.00269 * 184.99643 * 11 10 9 14 14 C 1.54323 * 103.10135 * 206.50926 * 13 11 10 15 15 N 1.47023 * 107.27274 * 22.10747 * 14 13 11 16 16 C 1.34773 * 125.64814 * 181.01843 * 15 14 13 17 17 O 1.21639 * 120.00111 * 175.57147 * 16 15 14 18 18 C 1.47069 * 120.00172 * 355.58090 * 16 15 14 19 19 C 1.38079 * 126.49595 * 359.96786 * 18 16 15 20 20 C 1.39258 * 107.69473 * 179.90467 * 19 18 16 21 21 N 1.31013 * 108.82608 * 0.36744 * 20 19 18 22 22 N 1.36952 * 126.49574 * 180.27985 * 18 16 15 23 23 C 1.40011 * 126.16913 * 359.97438 * 22 18 16 24 24 C 1.38886 * 120.06906 * 313.71526 * 23 22 18 25 25 C 1.38106 * 119.92735 * 179.74569 * 24 23 22 26 26 C 1.38280 * 120.07278 * 0.53056 * 25 24 23 27 27 C 1.38290 * 120.14553 * 359.74311 * 26 25 24 28 28 C 1.38110 * 120.06461 * 359.97438 * 27 26 25 29 29 C 1.47424 * 108.69930 * 1.05546 * 15 14 13 30 30 H 0.96997 * 120.00493 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00249 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47625 * 60.00179 * 10 9 7 33 33 H 1.09002 * 109.46865 * 299.99873 * 10 9 7 34 34 H 1.09002 * 110.71762 * 88.05666 * 13 11 10 35 35 H 1.08996 * 110.72176 * 324.96155 * 13 11 10 36 36 H 1.09007 * 109.87822 * 141.52539 * 14 13 11 37 37 H 1.09005 * 109.88315 * 262.68575 * 14 13 11 38 38 H 1.07996 * 126.14962 * 0.02562 * 19 18 16 39 39 H 1.08000 * 125.58289 * 180.12339 * 20 19 18 40 40 H 1.08004 * 120.03474 * 359.97438 * 24 23 22 41 41 H 1.08006 * 119.95875 * 180.25014 * 25 24 23 42 42 H 1.08007 * 119.93256 * 179.76575 * 26 25 24 43 43 H 1.07997 * 119.97206 * 180.02562 * 27 26 25 44 44 H 1.08003 * 120.03150 * 179.97438 * 28 27 26 45 45 H 1.09008 * 110.36384 * 94.71357 * 29 15 14 46 46 H 1.08996 * 110.36347 * 216.92218 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0008 12 1 0.3241 -4.6999 0.7923 13 6 1.7991 -6.1801 0.1281 14 6 0.8291 -7.1672 -0.5547 15 7 -0.0295 -6.3834 -1.4547 16 6 -1.0229 -6.8772 -2.2201 17 8 -1.7236 -6.1231 -2.8682 18 6 -1.2601 -8.3277 -2.2715 19 6 -0.5507 -9.3003 -1.5952 20 6 -1.1050 -10.5346 -1.9246 21 7 -2.0945 -10.3438 -2.7618 22 7 -2.2226 -8.9703 -3.0038 23 6 -3.1647 -8.3635 -3.8432 24 6 -3.8704 -7.2498 -3.4069 25 6 -4.7952 -6.6504 -4.2393 26 6 -5.0268 -7.1646 -5.5018 27 6 -4.3299 -8.2769 -5.9373 28 6 -3.3995 -8.8774 -5.1119 29 6 0.3769 -4.9682 -1.3820 30 1 -0.4851 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.6841 -3.7142 0.8921 33 1 2.6854 -3.7148 -0.8878 34 1 1.9436 -6.4437 1.1758 35 1 2.7542 -6.1528 -0.3965 36 1 1.3924 -7.9038 -1.1278 37 1 0.2189 -7.6674 0.1974 38 1 0.2828 -9.1336 -0.9290 39 1 -0.7711 -11.4925 -1.5540 40 1 -3.6935 -6.8506 -2.4190 41 1 -5.3414 -5.7819 -3.9019 42 1 -5.7532 -6.6963 -6.1495 43 1 -4.5126 -8.6758 -6.9241 44 1 -2.8558 -9.7462 -5.4524 45 1 1.0820 -4.7345 -2.1798 46 1 -0.4963 -4.3191 -1.4464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265989708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:33 Heat of formation + Delta-G solvation = 106.721648 kcal Electronic energy + Delta-G solvation = -28812.990301 eV Core-core repulsion = 24898.424417 eV Total energy + Delta-G solvation = -3914.565884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.86279 -39.78337 -39.07517 -37.64544 -34.81892 -33.63313 -32.53183 -31.29533 -30.83563 -30.35735 -29.28451 -28.54338 -25.86192 -24.36991 -23.47903 -23.07109 -22.24756 -21.73911 -21.02402 -20.13031 -19.75792 -17.96225 -17.11523 -16.80170 -16.45953 -16.09200 -15.81348 -15.60291 -15.05087 -14.75052 -14.41137 -14.37742 -13.99670 -13.90770 -13.69914 -13.54531 -13.30771 -13.17326 -12.91216 -12.73096 -12.57763 -12.18626 -11.83451 -11.81266 -11.42768 -11.32816 -11.07400 -10.86998 -10.66727 -10.63253 -10.49430 -10.30133 -10.13276 -10.05201 -9.69989 -9.35576 -9.07356 -8.89595 -8.70856 -8.48461 -6.95371 -5.77506 -3.07175 0.50738 1.20728 1.34007 1.89967 2.27103 2.90426 3.04977 3.43628 3.47975 3.49209 3.52920 4.09467 4.36993 4.53505 4.55389 4.70002 4.72765 4.74953 4.87965 4.93219 4.97538 5.11986 5.18917 5.23396 5.31665 5.35736 5.43615 5.49365 5.53000 5.57041 5.79844 5.81664 5.88922 5.92140 6.02572 6.07123 6.12307 6.14680 6.28506 6.30921 6.31561 6.32870 6.48052 6.64677 6.76927 6.89515 7.23181 7.35315 7.67857 7.93930 8.40622 9.51929 10.08293 10.42488 11.45048 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.002639 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.466561 B =10606.939609 C =12437.910490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.087 0.913 13 C -0.127 4.127 14 C 0.091 3.909 15 N -0.598 5.598 16 C 0.588 3.412 17 O -0.522 6.522 18 C 0.045 3.955 19 C -0.231 4.231 20 C 0.042 3.958 21 N -0.268 5.268 22 N -0.292 5.292 23 C 0.132 3.868 24 C -0.066 4.066 25 C -0.108 4.108 26 C -0.110 4.110 27 C -0.118 4.118 28 C -0.102 4.102 29 C 0.117 3.883 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.026 0.974 33 H 0.022 0.978 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.172 0.828 39 H 0.194 0.806 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.075 0.925 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 -23.410 -5.379 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.124 4.124 12 H 0.105 0.895 13 C -0.165 4.165 14 C -0.032 4.032 15 N -0.332 5.332 16 C 0.375 3.625 17 O -0.398 6.398 18 C -0.083 4.083 19 C -0.260 4.260 20 C -0.141 4.141 21 N -0.090 5.090 22 N -0.070 5.070 23 C 0.042 3.958 24 C -0.086 4.086 25 C -0.127 4.127 26 C -0.128 4.128 27 C -0.137 4.137 28 C -0.122 4.122 29 C -0.004 4.004 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.190 0.810 39 H 0.211 0.789 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.093 0.907 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.511 -23.413 -6.522 24.921 hybrid contribution 0.944 1.203 0.553 1.626 sum -4.567 -22.210 -5.969 23.447 Atomic orbital electron populations 1.69641 1.05121 1.25859 1.57380 1.24750 0.95511 0.97730 1.02833 0.86267 0.78528 0.83537 0.77835 1.21251 1.21682 1.21255 1.19159 0.90986 0.84115 1.43175 0.91197 1.42363 1.05884 0.99925 1.89593 1.20584 0.92678 0.84725 0.98300 1.22637 0.98543 0.94855 0.96390 0.89473 1.22701 0.98279 0.94177 1.01367 1.22511 0.92818 0.95065 0.92800 1.48212 1.32449 1.10513 1.41996 1.16578 0.80498 0.85210 0.80261 1.90902 1.46035 1.59206 1.43680 1.21194 0.94094 0.94136 0.98920 1.22596 1.05332 0.90995 1.07098 1.23908 0.94123 0.99625 0.96482 1.77513 1.20709 0.91235 1.19542 1.45997 1.23566 1.04024 1.33431 1.17369 0.92831 0.95816 0.89759 1.21094 0.92965 0.93488 1.01042 1.21029 0.97876 0.99835 0.93949 1.21286 0.99380 0.96029 0.96126 1.20975 0.96499 0.96510 0.99670 1.20967 0.99100 1.00501 0.91606 1.22479 1.00403 0.79546 0.97933 0.93397 0.78208 0.95652 0.95976 0.89648 0.90080 0.90562 0.90627 0.81049 0.78907 0.85139 0.84971 0.85433 0.85238 0.85437 0.90655 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.98 5.55 -59.91 -0.33 -18.31 16 10 C 0.17 3.06 5.72 -4.04 -0.02 3.03 16 11 C -0.10 -1.52 3.06 -88.36 -0.27 -1.79 16 12 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.13 -1.28 6.41 -24.90 -0.16 -1.43 16 14 C 0.09 0.86 5.00 -3.06 -0.02 0.85 16 15 N -0.60 -8.08 3.33 -171.78 -0.57 -8.65 16 16 C 0.59 8.95 7.61 -12.68 -0.10 8.85 16 17 O -0.52 -9.45 13.08 5.24 0.07 -9.38 16 18 C 0.04 0.60 6.76 -82.06 -0.55 0.04 16 19 C -0.23 -2.31 9.32 -39.26 -0.37 -2.68 16 20 C 0.04 0.40 11.96 -17.52 -0.21 0.20 16 21 N -0.27 -3.41 12.43 30.53 0.38 -3.03 16 22 N -0.29 -4.10 3.72 -7.08 -0.03 -4.13 16 23 C 0.13 1.85 5.90 -83.64 -0.49 1.36 16 24 C -0.07 -0.91 7.37 -39.39 -0.29 -1.20 16 25 C -0.11 -1.26 10.04 -39.61 -0.40 -1.66 16 26 C -0.11 -1.10 10.04 -39.55 -0.40 -1.49 16 27 C -0.12 -1.18 10.04 -39.61 -0.40 -1.58 16 28 C -0.10 -1.22 9.89 -39.39 -0.39 -1.61 16 29 C 0.12 1.83 6.37 -2.42 -0.02 1.81 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.38 9.99 7.67 -40.82 -0.31 9.68 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.02 0.42 7.97 -51.93 -0.41 0.00 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 36 H 0.08 0.58 6.61 -51.93 -0.34 0.24 16 37 H 0.08 0.61 7.24 -51.93 -0.38 0.24 16 38 H 0.17 1.22 4.42 -52.49 -0.23 0.98 16 39 H 0.19 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.95 6.74 -52.48 -0.35 1.59 16 41 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 42 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 45 H 0.08 1.22 7.91 -51.92 -0.41 0.81 16 46 H 0.09 1.60 7.99 -51.93 -0.42 1.18 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -34.28 378.46 -9.60 -43.88 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.20 Total: 8.62 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -4.32 Total: -4.58 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 0.17 Total: -61.49 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.28 -9.60 -43.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265989708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.602 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds