Wall clock time and date at job start Sat Apr 11 2020 06:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00087 * 2 1 4 4 H 1.48491 * 109.47044 * 239.99556 * 3 2 1 5 5 H 1.48499 * 109.46637 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47082 * 119.99615 * 3 2 1 7 7 C 1.38816 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99935 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99677 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99605 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46722 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.91869 * 308.89508 * 11 10 9 13 13 C 1.55159 * 111.00269 * 184.99643 * 11 10 9 14 14 C 1.54323 * 103.10135 * 206.50926 * 13 11 10 15 15 N 1.47023 * 107.27274 * 22.10747 * 14 13 11 16 16 C 1.34773 * 125.64814 * 181.01843 * 15 14 13 17 17 O 1.21639 * 120.00111 * 175.57147 * 16 15 14 18 18 C 1.47069 * 120.00172 * 355.58090 * 16 15 14 19 19 C 1.38079 * 126.49595 * 359.96786 * 18 16 15 20 20 C 1.39258 * 107.69473 * 179.90467 * 19 18 16 21 21 N 1.31013 * 108.82608 * 0.36744 * 20 19 18 22 22 N 1.36952 * 126.49574 * 180.27985 * 18 16 15 23 23 C 1.40011 * 126.16913 * 359.97438 * 22 18 16 24 24 C 1.38886 * 120.06906 * 313.71526 * 23 22 18 25 25 C 1.38106 * 119.92735 * 179.74569 * 24 23 22 26 26 C 1.38280 * 120.07278 * 0.53056 * 25 24 23 27 27 C 1.38290 * 120.14553 * 359.74311 * 26 25 24 28 28 C 1.38110 * 120.06461 * 359.97438 * 27 26 25 29 29 C 1.47424 * 108.69930 * 1.05546 * 15 14 13 30 30 H 0.96997 * 120.00493 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00249 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47625 * 60.00179 * 10 9 7 33 33 H 1.09002 * 109.46865 * 299.99873 * 10 9 7 34 34 H 1.09002 * 110.71762 * 88.05666 * 13 11 10 35 35 H 1.08996 * 110.72176 * 324.96155 * 13 11 10 36 36 H 1.09007 * 109.87822 * 141.52539 * 14 13 11 37 37 H 1.09005 * 109.88315 * 262.68575 * 14 13 11 38 38 H 1.07996 * 126.14962 * 0.02562 * 19 18 16 39 39 H 1.08000 * 125.58289 * 180.12339 * 20 19 18 40 40 H 1.08004 * 120.03474 * 359.97438 * 24 23 22 41 41 H 1.08006 * 119.95875 * 180.25014 * 25 24 23 42 42 H 1.08007 * 119.93256 * 179.76575 * 26 25 24 43 43 H 1.07997 * 119.97206 * 180.02562 * 27 26 25 44 44 H 1.08003 * 120.03150 * 179.97438 * 28 27 26 45 45 H 1.09008 * 110.36384 * 94.71357 * 29 15 14 46 46 H 1.08996 * 110.36347 * 216.92218 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0008 12 1 0.3241 -4.6999 0.7923 13 6 1.7991 -6.1801 0.1281 14 6 0.8291 -7.1672 -0.5547 15 7 -0.0295 -6.3834 -1.4547 16 6 -1.0229 -6.8772 -2.2201 17 8 -1.7236 -6.1231 -2.8682 18 6 -1.2601 -8.3277 -2.2715 19 6 -0.5507 -9.3003 -1.5952 20 6 -1.1050 -10.5346 -1.9246 21 7 -2.0945 -10.3438 -2.7618 22 7 -2.2226 -8.9703 -3.0038 23 6 -3.1647 -8.3635 -3.8432 24 6 -3.8704 -7.2498 -3.4069 25 6 -4.7952 -6.6504 -4.2393 26 6 -5.0268 -7.1646 -5.5018 27 6 -4.3299 -8.2769 -5.9373 28 6 -3.3995 -8.8774 -5.1119 29 6 0.3769 -4.9682 -1.3820 30 1 -0.4851 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.6841 -3.7142 0.8921 33 1 2.6854 -3.7148 -0.8878 34 1 1.9436 -6.4437 1.1758 35 1 2.7542 -6.1528 -0.3965 36 1 1.3924 -7.9038 -1.1278 37 1 0.2189 -7.6674 0.1974 38 1 0.2828 -9.1336 -0.9290 39 1 -0.7711 -11.4925 -1.5540 40 1 -3.6935 -6.8506 -2.4190 41 1 -5.3414 -5.7819 -3.9019 42 1 -5.7532 -6.6963 -6.1495 43 1 -4.5126 -8.6758 -6.9241 44 1 -2.8558 -9.7462 -5.4524 45 1 1.0820 -4.7345 -2.1798 46 1 -0.4963 -4.3191 -1.4464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265989708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:32 Heat of formation + Delta-G solvation = 84.777447 kcal Electronic energy + Delta-G solvation = -28813.941873 eV Core-core repulsion = 24898.424417 eV Total energy + Delta-G solvation = -3915.517456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.76201 -40.85878 -39.94063 -38.83025 -36.51061 -34.55873 -34.03582 -32.43460 -32.10069 -31.39904 -30.25033 -29.70381 -27.32798 -25.76209 -24.53815 -24.01076 -23.65957 -22.68947 -21.91389 -21.36918 -20.70941 -19.25666 -18.75424 -17.84298 -17.55488 -17.06779 -16.85076 -16.65367 -16.44918 -15.96049 -15.57681 -15.32891 -15.24679 -15.08881 -14.77461 -14.75511 -14.50165 -14.43058 -14.05731 -13.90396 -13.58206 -13.44221 -13.08757 -12.93642 -12.71568 -12.63330 -12.37230 -12.22249 -12.11982 -12.03831 -11.76791 -11.59996 -11.53904 -11.35375 -11.06841 -10.92259 -10.27861 -9.98168 -9.79043 -9.35504 -8.99366 -7.94382 -5.23475 -0.40913 0.30865 0.42550 0.98952 1.47222 1.47813 1.50502 1.56515 1.87280 2.02415 2.56485 2.65647 3.13375 3.39162 3.55559 3.60357 3.65537 3.85651 3.86450 3.89628 4.12301 4.14016 4.17462 4.27560 4.35971 4.37108 4.46151 4.50340 4.52172 4.57380 4.66065 4.77603 4.82983 4.83928 4.93648 5.01820 5.06226 5.15626 5.23769 5.26177 5.30243 5.42899 5.44045 5.51091 5.53270 5.63405 6.00513 6.24801 6.27354 6.43972 6.83568 7.33519 8.10405 8.31280 9.29091 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.002639 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.466561 B =10606.939609 C =12437.910490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.163 3.837 11 C -0.097 4.097 12 H 0.077 0.923 13 C -0.112 4.112 14 C 0.084 3.916 15 N -0.596 5.596 16 C 0.580 3.420 17 O -0.566 6.566 18 C 0.012 3.988 19 C -0.205 4.205 20 C 0.053 3.947 21 N -0.293 5.293 22 N -0.310 5.310 23 C 0.110 3.890 24 C -0.090 4.090 25 C -0.121 4.121 26 C -0.108 4.108 27 C -0.111 4.111 28 C -0.114 4.114 29 C 0.123 3.877 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.038 0.962 33 H 0.026 0.974 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.207 0.793 39 H 0.241 0.759 40 H 0.105 0.895 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.133 0.867 45 H 0.065 0.935 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.242 -26.135 -5.157 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.037 3.963 11 C -0.116 4.116 12 H 0.095 0.905 13 C -0.150 4.150 14 C -0.036 4.036 15 N -0.328 5.328 16 C 0.368 3.632 17 O -0.446 6.446 18 C -0.114 4.114 19 C -0.235 4.235 20 C -0.130 4.130 21 N -0.114 5.114 22 N -0.089 5.089 23 C 0.020 3.980 24 C -0.111 4.111 25 C -0.139 4.139 26 C -0.126 4.126 27 C -0.129 4.129 28 C -0.134 4.134 29 C 0.000 4.000 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.223 0.777 39 H 0.257 0.743 40 H 0.123 0.877 41 H 0.159 0.841 42 H 0.178 0.822 43 H 0.182 0.818 44 H 0.151 0.849 45 H 0.083 0.917 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.441 -26.190 -6.275 27.150 hybrid contribution 0.367 1.949 0.493 2.043 sum -3.074 -24.241 -5.782 25.110 Atomic orbital electron populations 1.69818 1.06759 1.26086 1.59603 1.25601 0.96341 1.01286 1.03832 0.85208 0.77158 0.79100 0.78285 1.20446 1.22483 1.20030 1.19631 0.91624 0.85309 1.41033 0.90228 1.42641 1.05599 1.01456 1.89481 1.20778 0.93305 0.83619 0.98604 1.22451 0.97927 0.96224 0.95021 0.90488 1.22723 0.98170 0.90571 1.03533 1.22878 0.92698 0.95101 0.92945 1.48228 1.32515 1.09906 1.42185 1.16984 0.80222 0.86138 0.79860 1.90870 1.47651 1.60472 1.45601 1.21172 0.95768 0.93438 1.01039 1.23044 1.04814 0.90057 1.05553 1.24726 0.92422 1.01218 0.94677 1.77485 1.22273 0.90780 1.20900 1.46122 1.24068 1.04476 1.34243 1.17652 0.93332 0.96210 0.90788 1.21031 0.94702 0.94668 1.00650 1.21287 0.97657 1.00201 0.94801 1.21656 0.99560 0.95832 0.95513 1.21408 0.95051 0.95860 1.00603 1.21188 0.99951 1.01000 0.91263 1.22207 0.98530 0.80655 0.98581 0.94131 0.79715 0.94405 0.95607 0.86774 0.88768 0.87468 0.88336 0.77669 0.74339 0.87715 0.84138 0.82201 0.81836 0.84867 0.91650 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 3 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.24 -13.54 9.99 84.03 0.84 -12.70 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.75 -37.53 5.55 -343.44 -1.91 -39.44 16 10 C 0.16 5.95 5.72 86.38 0.49 6.45 16 11 C -0.10 -2.75 3.06 -9.33 -0.03 -2.78 16 12 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 13 C -0.11 -1.85 6.41 31.78 0.20 -1.65 16 14 C 0.08 1.32 5.00 86.73 0.43 1.75 16 15 N -0.60 -16.05 3.33 -815.63 -2.71 -18.76 16 16 C 0.58 18.43 7.61 86.56 0.66 19.09 16 17 O -0.57 -22.47 13.08 -4.15 -0.05 -22.52 16 18 C 0.01 0.33 6.76 40.62 0.27 0.61 16 19 C -0.21 -3.48 9.32 22.48 0.21 -3.27 16 20 C 0.05 0.84 11.96 85.06 1.02 1.86 16 21 N -0.29 -7.12 12.43 -57.33 -0.71 -7.83 16 22 N -0.31 -8.88 3.72 -176.32 -0.66 -9.54 16 23 C 0.11 3.27 5.90 38.14 0.23 3.50 16 24 C -0.09 -2.75 7.37 22.39 0.16 -2.59 16 25 C -0.12 -3.01 10.04 22.25 0.22 -2.79 16 26 C -0.11 -2.08 10.04 22.29 0.22 -1.86 16 27 C -0.11 -2.11 10.04 22.25 0.22 -1.88 16 28 C -0.11 -2.78 9.89 22.39 0.22 -2.56 16 29 C 0.12 4.00 6.37 86.93 0.55 4.55 16 30 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.37 20.25 7.67 -92.71 -0.71 19.54 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.03 0.94 7.97 -2.39 -0.02 0.92 16 34 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16 36 H 0.11 1.09 6.61 -2.38 -0.02 1.08 16 37 H 0.10 1.16 7.24 -2.38 -0.02 1.14 16 38 H 0.21 1.84 4.42 -2.91 -0.01 1.83 16 39 H 0.24 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.10 3.60 6.74 -2.91 -0.02 3.58 16 41 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 42 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 43 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 45 H 0.07 2.22 7.91 -2.38 -0.02 2.20 16 46 H 0.05 1.86 7.99 -2.39 -0.02 1.84 16 Total: -1.00 -80.80 378.46 2.97 -77.83 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.30 Total: 30.59 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 6.41 Total: 1.65 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -5.71 Total: -135.92 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -80.80 2.97 -77.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265989708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.606 kcal (2) G-P(sol) polarization free energy of solvation -80.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds