Wall clock time and date at job start Sat Apr 11 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99617 * 2 1 4 4 H 1.48497 * 109.46936 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47177 * 119.99756 * 3 2 1 6 6 H 1.48503 * 109.46864 * 239.99574 * 3 2 1 7 7 C 1.38810 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99723 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00203 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47506 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.88340 * 54.29426 * 11 10 9 13 13 C 1.55152 * 111.00668 * 178.18047 * 11 10 9 14 14 C 1.54366 * 102.92187 * 153.54374 * 13 11 10 15 15 N 1.47023 * 107.28625 * 337.85882 * 14 13 11 16 16 C 1.34782 * 125.64622 * 178.94421 * 15 14 13 17 17 O 1.21635 * 119.99802 * 175.48014 * 16 15 14 18 18 C 1.47075 * 119.99934 * 355.47657 * 16 15 14 19 19 C 1.38072 * 126.49858 * 0.52176 * 18 16 15 20 20 C 1.39250 * 107.69728 * 179.90391 * 19 18 16 21 21 N 1.31015 * 108.82925 * 0.36597 * 20 19 18 22 22 N 1.36948 * 126.49271 * 180.83382 * 18 16 15 23 23 C 1.40022 * 126.17001 * 359.97438 * 22 18 16 24 24 C 1.38885 * 120.06655 * 313.69329 * 23 22 18 25 25 C 1.38101 * 119.92554 * 179.74786 * 24 23 22 26 26 C 1.38295 * 120.07084 * 0.52980 * 25 24 23 27 27 C 1.38280 * 120.14138 * 359.74624 * 26 25 24 28 28 C 1.38107 * 120.07370 * 359.97438 * 27 26 25 29 29 C 1.47415 * 108.70364 * 358.90870 * 15 14 13 30 30 H 0.96994 * 120.00693 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99664 * 359.97438 * 9 7 2 32 32 H 1.09006 * 109.46992 * 300.00152 * 10 9 7 33 33 H 1.09001 * 109.47560 * 59.99562 * 10 9 7 34 34 H 1.09003 * 110.72185 * 271.93626 * 13 11 10 35 35 H 1.09006 * 110.71957 * 35.20787 * 13 11 10 36 36 H 1.09002 * 109.90349 * 218.42041 * 14 13 11 37 37 H 1.08996 * 109.97797 * 97.34012 * 14 13 11 38 38 H 1.07994 * 126.14761 * 0.02562 * 19 18 16 39 39 H 1.08000 * 125.58378 * 180.16715 * 20 19 18 40 40 H 1.08000 * 120.03583 * 359.97438 * 24 23 22 41 41 H 1.07998 * 119.96691 * 180.29345 * 25 24 23 42 42 H 1.07999 * 119.92585 * 179.76627 * 26 25 24 43 43 H 1.08007 * 119.96332 * 180.02562 * 27 26 25 44 44 H 1.07995 * 120.03636 * 180.02562 * 28 27 26 45 45 H 1.09003 * 110.36708 * 265.28610 * 29 15 14 46 46 H 1.09002 * 110.45786 * 143.01493 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7464 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0641 -4.8197 -0.0001 12 1 0.3601 -4.7287 -0.8273 13 6 1.8031 -6.1831 -0.0461 14 6 0.7995 -7.1427 0.6283 15 7 -0.0955 -6.3249 1.4600 16 6 -1.1244 -6.7883 2.1970 17 8 -1.7495 -6.0298 2.9135 18 6 -1.4913 -8.2112 2.1348 19 6 -0.8714 -9.1870 1.3798 20 6 -1.5324 -10.3894 1.6170 21 7 -2.5103 -10.1749 2.4621 22 7 -2.5164 -8.8182 2.8103 23 6 -3.4098 -8.1950 3.6901 24 6 -2.9349 -7.3268 4.6646 25 6 -3.8191 -6.7097 5.5275 26 6 -5.1749 -6.9639 5.4291 27 6 -5.6503 -7.8322 4.4636 28 6 -4.7719 -8.4482 3.5939 29 6 0.3193 -4.9142 1.3549 30 1 -0.4851 0.8399 -0.0004 31 1 0.3557 -2.3880 0.0005 32 1 2.6849 -3.7144 -0.8895 33 1 2.6849 -3.7145 0.8905 34 1 1.9929 -6.4844 -1.0764 35 1 2.7330 -6.1371 0.5209 36 1 1.3334 -7.8594 1.2524 37 1 0.2215 -7.6704 -0.1302 38 1 -0.0248 -9.0437 0.7249 39 1 -1.2822 -11.3421 1.1741 40 1 -1.8758 -7.1317 4.7451 41 1 -3.4511 -6.0308 6.2824 42 1 -5.8639 -6.4829 6.1075 43 1 -6.7098 -8.0284 4.3890 44 1 -5.1438 -9.1259 2.8398 45 1 0.9888 -4.6536 2.1748 46 1 -0.5523 -4.2597 1.3552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265989709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:36 Heat of formation + Delta-G solvation = 85.113981 kcal Electronic energy + Delta-G solvation = -28836.439380 eV Core-core repulsion = 24920.936517 eV Total energy + Delta-G solvation = -3915.502863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.76241 -40.86384 -39.93904 -38.84068 -36.51016 -34.55703 -34.03432 -32.43034 -32.10135 -31.40269 -30.24949 -29.70019 -27.32850 -25.76529 -24.54559 -24.01061 -23.66435 -22.69326 -21.91890 -21.33598 -20.71140 -19.26435 -18.75427 -17.81512 -17.48138 -17.29202 -16.82421 -16.64118 -16.32175 -15.94045 -15.73522 -15.31600 -15.15287 -15.07829 -14.82052 -14.73242 -14.51208 -14.44429 -14.06534 -13.86540 -13.60574 -13.42681 -13.10395 -12.93960 -12.70888 -12.62930 -12.35974 -12.21381 -12.12864 -12.01937 -11.77952 -11.62000 -11.52356 -11.35453 -11.06769 -10.92322 -10.27769 -9.97658 -9.79204 -9.35416 -8.99432 -7.94345 -5.23552 -0.40725 0.31061 0.42662 0.99032 1.47183 1.47748 1.50460 1.56522 1.87031 2.02865 2.56445 2.65717 3.13659 3.39263 3.55756 3.60202 3.65212 3.85861 3.88604 3.89051 4.11508 4.13991 4.17492 4.26960 4.36522 4.37266 4.46632 4.50370 4.51987 4.57157 4.66274 4.79207 4.81189 4.84305 4.93733 5.01988 5.06660 5.15898 5.23694 5.26198 5.30187 5.43125 5.43913 5.50955 5.53245 5.63408 6.00653 6.24951 6.27298 6.43962 6.83565 7.33443 8.10356 8.31131 9.29090 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012983 B = 0.002671 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.073894 B =10479.586528 C =12285.188185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.299 1.299 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.163 3.837 11 C -0.097 4.097 12 H 0.078 0.922 13 C -0.111 4.111 14 C 0.084 3.916 15 N -0.596 5.596 16 C 0.580 3.420 17 O -0.566 6.566 18 C 0.013 3.987 19 C -0.206 4.206 20 C 0.053 3.947 21 N -0.293 5.293 22 N -0.310 5.310 23 C 0.110 3.890 24 C -0.089 4.089 25 C -0.120 4.120 26 C -0.108 4.108 27 C -0.112 4.112 28 C -0.116 4.116 29 C 0.125 3.875 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.038 0.962 33 H 0.026 0.974 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.207 0.793 39 H 0.241 0.759 40 H 0.108 0.892 41 H 0.143 0.857 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.132 0.868 45 H 0.064 0.936 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 -25.715 4.345 26.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.225 1.225 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.037 3.963 11 C -0.117 4.117 12 H 0.096 0.904 13 C -0.149 4.149 14 C -0.037 4.037 15 N -0.328 5.328 16 C 0.368 3.632 17 O -0.446 6.446 18 C -0.114 4.114 19 C -0.235 4.235 20 C -0.131 4.131 21 N -0.115 5.115 22 N -0.089 5.089 23 C 0.019 3.981 24 C -0.109 4.109 25 C -0.139 4.139 26 C -0.126 4.126 27 C -0.130 4.130 28 C -0.135 4.135 29 C 0.002 3.998 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.134 0.866 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.224 0.776 39 H 0.257 0.743 40 H 0.126 0.874 41 H 0.161 0.839 42 H 0.178 0.822 43 H 0.180 0.820 44 H 0.150 0.850 45 H 0.083 0.917 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.400 -25.732 5.451 26.669 hybrid contribution 0.518 1.887 -0.310 1.981 sum -3.882 -23.846 5.141 24.701 Atomic orbital electron populations 1.69824 1.06767 1.26081 1.59618 1.25604 0.96334 1.01296 1.03834 0.85206 0.77150 0.79090 0.78291 1.22502 1.20413 1.20042 1.19630 0.91630 0.85305 1.41018 0.90210 1.42637 1.05602 1.01466 1.89481 1.20785 0.93314 0.83622 0.98613 1.22432 0.97618 0.96295 0.95334 0.90365 1.22733 0.97783 0.90742 1.03657 1.22894 0.91586 0.94547 0.94657 1.48240 1.29364 1.09623 1.45605 1.16987 0.80049 0.85988 0.80204 1.90867 1.53672 1.59061 1.40963 1.21175 0.95055 0.94072 1.01100 1.23051 1.05432 0.90438 1.04596 1.24724 0.91928 1.01277 0.95122 1.77488 1.23764 0.91113 1.19103 1.46127 1.23116 1.05976 1.33686 1.17668 0.89103 0.98606 0.92697 1.21042 1.00459 0.96104 0.93328 1.21298 0.93886 0.99467 0.99231 1.21662 0.95304 0.97159 0.98498 1.21401 1.00881 0.96349 0.94412 1.21185 0.90441 1.01059 1.00862 1.22144 0.98303 0.80781 0.98571 0.94144 0.79727 0.94446 0.95567 0.86584 0.88881 0.87793 0.87999 0.77645 0.74346 0.87406 0.83903 0.82206 0.81971 0.85020 0.91741 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.76 13.06 21.65 0.28 -60.47 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 4 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.24 -13.54 9.99 84.03 0.84 -12.70 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.75 -37.55 5.49 -343.46 -1.89 -39.44 16 10 C 0.16 5.94 5.71 86.38 0.49 6.43 16 11 C -0.10 -2.76 3.07 -9.40 -0.03 -2.79 16 12 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 13 C -0.11 -1.83 6.42 31.80 0.20 -1.62 16 14 C 0.08 1.31 5.02 86.74 0.44 1.74 16 15 N -0.60 -16.12 3.33 -815.99 -2.71 -18.84 16 16 C 0.58 18.50 7.62 86.56 0.66 19.16 16 17 O -0.57 -22.50 13.11 -4.14 -0.05 -22.55 16 18 C 0.01 0.34 6.76 40.63 0.27 0.61 16 19 C -0.21 -3.53 9.32 22.47 0.21 -3.32 16 20 C 0.05 0.85 11.96 85.06 1.02 1.87 16 21 N -0.29 -7.19 12.43 -57.34 -0.71 -7.90 16 22 N -0.31 -8.94 3.72 -176.31 -0.66 -9.60 16 23 C 0.11 3.26 5.91 38.14 0.23 3.49 16 24 C -0.09 -2.68 7.36 22.39 0.16 -2.51 16 25 C -0.12 -2.94 10.04 22.25 0.22 -2.72 16 26 C -0.11 -2.11 10.04 22.29 0.22 -1.89 16 27 C -0.11 -2.19 10.04 22.25 0.22 -1.97 16 28 C -0.12 -2.89 9.89 22.39 0.22 -2.67 16 29 C 0.12 4.09 6.21 86.86 0.54 4.63 16 30 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.37 20.28 7.63 -92.71 -0.71 19.57 16 32 H 0.04 1.30 8.14 -2.38 -0.02 1.29 16 33 H 0.03 0.95 8.04 -2.39 -0.02 0.93 16 34 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.38 8.04 -2.38 -0.02 1.36 16 36 H 0.10 1.11 7.37 -2.39 -0.02 1.09 16 37 H 0.10 1.15 6.45 -2.39 -0.02 1.13 16 38 H 0.21 1.88 4.42 -2.91 -0.01 1.87 16 39 H 0.24 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.11 3.58 6.72 -2.91 -0.02 3.56 16 41 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 43 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 44 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 45 H 0.06 2.22 7.96 -2.39 -0.02 2.20 16 46 H 0.04 1.81 8.08 -2.39 -0.02 1.79 16 Total: -1.00 -80.95 378.45 2.98 -77.97 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.30 Total: 30.76 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 6.39 Total: 1.66 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -5.69 Total: -136.25 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -80.95 2.98 -77.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265989709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.086 kcal (2) G-P(sol) polarization free energy of solvation -80.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds