Wall clock time and date at job start Sat Apr 11 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99610 * 2 1 4 4 H 1.48500 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46916 * 299.99550 * 3 2 1 6 6 H 1.48498 * 109.47413 * 59.99791 * 3 2 1 7 7 C 1.38811 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99752 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00106 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47607 * 184.94400 * 10 9 7 12 12 H 1.09002 * 109.99603 * 54.82399 * 11 10 9 13 13 C 1.54322 * 109.87813 * 293.73490 * 11 10 9 14 14 C 1.55164 * 102.94099 * 218.38494 * 13 11 10 15 15 C 1.54699 * 101.67485 * 35.33738 * 14 13 11 16 16 N 1.47022 * 109.88358 * 175.92415 * 11 10 9 17 17 C 1.34775 * 125.64725 * 298.31868 * 16 11 10 18 18 O 1.21576 * 120.00006 * 354.92384 * 17 16 11 19 19 C 1.47665 * 119.99598 * 174.91892 * 17 16 11 20 20 C 1.41535 * 126.44072 * 180.02562 * 19 17 16 21 21 C 1.35354 * 105.55779 * 180.02562 * 20 19 17 22 22 N 1.35857 * 107.12300 * 359.97438 * 21 20 19 23 23 C 1.40114 * 124.95501 * 179.97438 * 22 21 20 24 24 C 1.38854 * 120.07333 * 0.31643 * 23 22 21 25 25 C 1.38112 * 119.93391 * 180.23028 * 24 23 22 26 26 C 1.38282 * 120.06751 * 359.47875 * 25 24 23 27 27 C 1.38285 * 120.13835 * 0.24576 * 26 25 24 28 28 C 1.38121 * 120.06588 * 0.02562 * 27 26 25 29 29 N 1.28479 * 110.08298 * 0.23111 * 22 21 20 30 30 H 0.97003 * 120.00527 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00252 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47014 * 64.93608 * 10 9 7 33 33 H 1.09002 * 109.47051 * 304.94800 * 10 9 7 34 34 H 1.09002 * 110.72375 * 336.74946 * 13 11 10 35 35 H 1.09003 * 110.72553 * 100.02961 * 13 11 10 36 36 H 1.09000 * 111.00461 * 153.57371 * 14 13 11 37 37 H 1.08995 * 111.00735 * 277.43036 * 14 13 11 38 38 H 1.08996 * 110.38971 * 204.36438 * 15 14 13 39 39 H 1.08997 * 110.23750 * 82.11101 * 15 14 13 40 40 H 1.08003 * 127.22105 * 359.97438 * 20 19 17 41 41 H 1.08000 * 126.43557 * 179.97438 * 21 20 19 42 42 H 1.08006 * 120.03476 * 359.97438 * 24 23 22 43 43 H 1.07996 * 119.96717 * 179.74682 * 25 24 23 44 44 H 1.07996 * 119.93398 * 180.27489 * 26 25 24 45 45 H 1.07999 * 119.97050 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.03186 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0687 -4.8170 -0.1238 12 1 0.4422 -4.6798 -1.0052 13 6 0.1867 -4.8923 1.1404 14 6 0.0422 -6.4196 1.3728 15 6 1.4296 -6.9371 0.9251 16 7 1.7994 -6.0890 -0.2227 17 6 2.6603 -6.4260 -1.2034 18 8 2.8173 -5.6862 -2.1552 19 6 3.4128 -7.6939 -1.1215 20 6 4.3464 -8.1800 -2.0678 21 6 4.7764 -9.3660 -1.5773 22 7 4.1297 -9.5701 -0.4000 23 6 4.2974 -10.6907 0.4242 24 6 5.1839 -11.6956 0.0605 25 6 5.3434 -12.8012 0.8727 26 6 4.6293 -12.9029 2.0525 27 6 3.7499 -11.9011 2.4204 28 6 3.5818 -10.7956 1.6096 29 7 3.3381 -8.5881 -0.1555 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3880 -0.0002 32 1 2.6168 -3.7537 0.9315 33 1 2.7496 -3.6770 -0.8418 34 1 0.6845 -4.4188 1.9867 35 1 -0.7865 -4.4361 0.9595 36 1 -0.1378 -6.6394 2.4251 37 1 -0.7471 -6.8370 0.7476 38 1 1.3650 -7.9815 0.6198 39 1 2.1536 -6.8208 1.7315 40 1 4.6511 -7.7047 -2.9885 41 1 5.4980 -10.0260 -2.0357 42 1 5.7451 -11.6147 -0.8588 43 1 6.0297 -13.5850 0.5883 44 1 4.7590 -13.7662 2.6882 45 1 3.1939 -11.9831 3.3426 46 1 2.8946 -10.0138 1.8972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270083650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:54 Heat of formation + Delta-G solvation = 104.235507 kcal Electronic energy + Delta-G solvation = -28659.288739 eV Core-core repulsion = 24744.615047 eV Total energy + Delta-G solvation = -3914.673692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.12804 -39.90060 -39.39239 -37.22966 -34.46960 -33.94023 -32.05834 -31.63067 -31.24561 -30.65967 -29.62784 -28.53344 -25.33126 -24.72683 -23.76395 -23.03785 -22.08751 -21.63955 -21.14482 -20.34671 -19.12809 -18.52293 -17.23700 -16.74567 -16.68935 -16.49973 -16.08830 -15.42488 -15.18517 -14.74507 -14.40714 -14.16165 -14.09513 -13.84440 -13.69681 -13.42132 -13.27043 -13.13994 -13.09943 -12.63993 -12.50478 -12.20312 -12.13163 -11.74446 -11.49595 -11.28203 -10.88237 -10.79658 -10.72384 -10.52762 -10.40936 -10.31959 -9.94565 -9.89971 -9.62190 -9.59970 -9.50539 -8.78273 -8.64910 -8.32195 -6.82514 -5.67966 -2.95736 0.31061 0.75780 1.67706 1.99292 2.03712 3.11370 3.22719 3.50066 3.50770 3.55778 3.58424 3.96350 4.23235 4.36348 4.45343 4.59367 4.67163 4.70216 4.77822 4.78704 4.96541 5.02633 5.14382 5.20093 5.37846 5.40846 5.51397 5.52380 5.62300 5.67396 5.70912 5.76113 5.81334 5.89807 5.92042 6.05499 6.09617 6.17160 6.18175 6.20517 6.27577 6.50776 6.59593 6.68824 6.91640 7.05417 7.57980 7.74728 7.80775 8.35886 8.51244 9.62163 10.18877 10.54981 11.55246 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019895 B = 0.002297 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.037575 B =12189.479890 C =12794.599562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.147 3.853 11 C 0.131 3.869 12 H 0.079 0.921 13 C -0.121 4.121 14 C -0.136 4.136 15 C 0.107 3.893 16 N -0.598 5.598 17 C 0.611 3.389 18 O -0.519 6.519 19 C 0.010 3.990 20 C -0.166 4.166 21 C -0.020 4.020 22 N -0.241 5.241 23 C 0.140 3.860 24 C -0.130 4.130 25 C -0.097 4.097 26 C -0.123 4.123 27 C -0.097 4.097 28 C -0.110 4.110 29 N -0.256 5.256 30 H 0.253 0.747 31 H 0.383 0.617 32 H 0.016 0.984 33 H 0.036 0.964 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.170 0.830 41 H 0.185 0.815 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.135 0.865 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.914 -32.142 4.118 33.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.363 4.363 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.018 3.982 11 C 0.028 3.972 12 H 0.097 0.903 13 C -0.159 4.159 14 C -0.174 4.174 15 C -0.016 4.016 16 N -0.332 5.332 17 C 0.397 3.603 18 O -0.392 6.392 19 C -0.152 4.152 20 C -0.194 4.194 21 C -0.159 4.159 22 N -0.022 5.022 23 C 0.050 3.950 24 C -0.150 4.150 25 C -0.115 4.115 26 C -0.142 4.142 27 C -0.116 4.116 28 C -0.130 4.130 29 N -0.089 5.089 30 H 0.063 0.937 31 H 0.217 0.783 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.187 0.813 41 H 0.202 0.798 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.153 0.847 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.679 -31.886 4.562 33.113 hybrid contribution 0.660 1.058 -0.771 1.466 sum 8.338 -30.828 3.791 32.160 Atomic orbital electron populations 1.69666 1.05039 1.25400 1.58319 1.24719 0.95558 0.97596 1.03317 0.86099 0.78815 0.84130 0.77096 1.20596 1.21892 1.21956 1.19272 0.91074 0.84001 1.41905 0.91200 1.42208 1.05766 0.99691 1.89553 1.20941 0.93640 0.85149 0.98449 1.21866 0.93469 0.83013 0.98819 0.90258 1.22681 1.00512 0.95144 0.97539 1.22803 0.96372 0.96563 1.01696 1.22336 0.95867 0.95054 0.88350 1.48302 1.43055 1.17760 1.24064 1.16428 0.78686 0.83297 0.81919 1.90859 1.65254 1.51293 1.31833 1.22156 1.02282 0.96440 0.94344 1.21879 0.99923 0.95386 1.02171 1.22995 1.03270 1.00466 0.89126 1.42816 1.29212 1.14350 1.15862 1.17695 0.99631 0.85781 0.91926 1.20871 0.98976 0.93626 1.01566 1.21009 0.99297 0.97029 0.94189 1.21320 0.96599 0.99309 0.96937 1.21140 0.97978 0.92946 0.99508 1.21031 0.99819 0.99545 0.92615 1.73662 1.13302 0.97067 1.24884 0.93664 0.78290 0.96644 0.94577 0.89879 0.89702 0.90018 0.90947 0.89896 0.91507 0.81288 0.79829 0.84879 0.84803 0.85225 0.84741 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.07 13.06 55.49 0.72 -28.35 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 3 Si 0.91 23.37 29.55 -169.99 -5.02 18.35 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 7 C -0.23 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.73 -19.60 5.45 -59.91 -0.33 -19.92 16 10 C 0.15 3.36 5.65 -4.04 -0.02 3.34 16 11 C 0.13 2.45 2.93 -66.96 -0.20 2.25 16 12 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 13 C -0.12 -1.87 6.05 -24.89 -0.15 -2.02 16 14 C -0.14 -1.61 7.07 -24.69 -0.17 -1.78 16 15 C 0.11 1.40 5.97 -2.64 -0.02 1.38 16 16 N -0.60 -10.04 3.07 -164.32 -0.50 -10.54 16 17 C 0.61 11.04 7.58 -12.41 -0.09 10.94 16 18 O -0.52 -11.18 16.11 5.30 0.09 -11.09 16 19 C 0.01 0.14 6.95 -82.76 -0.58 -0.43 16 20 C -0.17 -2.05 10.80 -39.35 -0.42 -2.47 16 21 C -0.02 -0.19 10.78 -16.80 -0.18 -0.37 16 22 N -0.24 -2.63 3.52 -10.55 -0.04 -2.66 16 23 C 0.14 1.24 6.66 -83.61 -0.56 0.68 16 24 C -0.13 -0.81 9.43 -39.40 -0.37 -1.19 16 25 C -0.10 -0.47 10.04 -39.61 -0.40 -0.86 16 26 C -0.12 -0.59 10.04 -39.55 -0.40 -0.99 16 27 C -0.10 -0.56 10.04 -39.61 -0.40 -0.96 16 28 C -0.11 -0.89 9.59 -39.40 -0.38 -1.27 16 29 N -0.26 -3.36 8.42 33.42 0.28 -3.08 16 30 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.38 10.55 7.42 -40.82 -0.30 10.25 16 32 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 33 H 0.04 0.92 6.91 -51.93 -0.36 0.56 16 34 H 0.08 1.37 7.78 -51.93 -0.40 0.96 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.01 6.53 -51.93 -0.34 0.67 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.17 1.88 8.06 -52.48 -0.42 1.46 16 41 H 0.18 0.97 6.96 -52.49 -0.37 0.60 16 42 H 0.13 0.56 6.65 -52.48 -0.35 0.21 16 43 H 0.13 0.32 8.06 -52.49 -0.42 -0.10 16 44 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 45 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 46 H 0.14 1.18 7.65 -52.49 -0.40 0.78 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -36.38 382.59 -9.90 -46.29 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.29 Total: 6.59 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -4.58 Total: -1.35 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: 0.14 Total: -64.56 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.38 -9.90 -46.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270083650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.524 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds