Wall clock time and date at job start Sat Apr 11 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99610 * 2 1 4 4 H 1.48500 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46916 * 299.99550 * 3 2 1 6 6 H 1.48498 * 109.47413 * 59.99791 * 3 2 1 7 7 C 1.38811 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99752 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00106 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47607 * 184.94400 * 10 9 7 12 12 H 1.09002 * 109.99603 * 54.82399 * 11 10 9 13 13 C 1.54322 * 109.87813 * 293.73490 * 11 10 9 14 14 C 1.55164 * 102.94099 * 218.38494 * 13 11 10 15 15 C 1.54699 * 101.67485 * 35.33738 * 14 13 11 16 16 N 1.47022 * 109.88358 * 175.92415 * 11 10 9 17 17 C 1.34775 * 125.64725 * 298.31868 * 16 11 10 18 18 O 1.21576 * 120.00006 * 354.92384 * 17 16 11 19 19 C 1.47665 * 119.99598 * 174.91892 * 17 16 11 20 20 C 1.41535 * 126.44072 * 180.02562 * 19 17 16 21 21 C 1.35354 * 105.55779 * 180.02562 * 20 19 17 22 22 N 1.35857 * 107.12300 * 359.97438 * 21 20 19 23 23 C 1.40114 * 124.95501 * 179.97438 * 22 21 20 24 24 C 1.38854 * 120.07333 * 0.31643 * 23 22 21 25 25 C 1.38112 * 119.93391 * 180.23028 * 24 23 22 26 26 C 1.38282 * 120.06751 * 359.47875 * 25 24 23 27 27 C 1.38285 * 120.13835 * 0.24576 * 26 25 24 28 28 C 1.38121 * 120.06588 * 0.02562 * 27 26 25 29 29 N 1.28479 * 110.08298 * 0.23111 * 22 21 20 30 30 H 0.97003 * 120.00527 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00252 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47014 * 64.93608 * 10 9 7 33 33 H 1.09002 * 109.47051 * 304.94800 * 10 9 7 34 34 H 1.09002 * 110.72375 * 336.74946 * 13 11 10 35 35 H 1.09003 * 110.72553 * 100.02961 * 13 11 10 36 36 H 1.09000 * 111.00461 * 153.57371 * 14 13 11 37 37 H 1.08995 * 111.00735 * 277.43036 * 14 13 11 38 38 H 1.08996 * 110.38971 * 204.36438 * 15 14 13 39 39 H 1.08997 * 110.23750 * 82.11101 * 15 14 13 40 40 H 1.08003 * 127.22105 * 359.97438 * 20 19 17 41 41 H 1.08000 * 126.43557 * 179.97438 * 21 20 19 42 42 H 1.08006 * 120.03476 * 359.97438 * 24 23 22 43 43 H 1.07996 * 119.96717 * 179.74682 * 25 24 23 44 44 H 1.07996 * 119.93398 * 180.27489 * 26 25 24 45 45 H 1.07999 * 119.97050 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.03186 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0687 -4.8170 -0.1238 12 1 0.4422 -4.6798 -1.0052 13 6 0.1867 -4.8923 1.1404 14 6 0.0422 -6.4196 1.3728 15 6 1.4296 -6.9371 0.9251 16 7 1.7994 -6.0890 -0.2227 17 6 2.6603 -6.4260 -1.2034 18 8 2.8173 -5.6862 -2.1552 19 6 3.4128 -7.6939 -1.1215 20 6 4.3464 -8.1800 -2.0678 21 6 4.7764 -9.3660 -1.5773 22 7 4.1297 -9.5701 -0.4000 23 6 4.2974 -10.6907 0.4242 24 6 5.1839 -11.6956 0.0605 25 6 5.3434 -12.8012 0.8727 26 6 4.6293 -12.9029 2.0525 27 6 3.7499 -11.9011 2.4204 28 6 3.5818 -10.7956 1.6096 29 7 3.3381 -8.5881 -0.1555 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3880 -0.0002 32 1 2.6168 -3.7537 0.9315 33 1 2.7496 -3.6770 -0.8418 34 1 0.6845 -4.4188 1.9867 35 1 -0.7865 -4.4361 0.9595 36 1 -0.1378 -6.6394 2.4251 37 1 -0.7471 -6.8370 0.7476 38 1 1.3650 -7.9815 0.6198 39 1 2.1536 -6.8208 1.7315 40 1 4.6511 -7.7047 -2.9885 41 1 5.4980 -10.0260 -2.0357 42 1 5.7451 -11.6147 -0.8588 43 1 6.0297 -13.5850 0.5883 44 1 4.7590 -13.7662 2.6882 45 1 3.1939 -11.9831 3.3426 46 1 2.8946 -10.0138 1.8972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270083650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:53 Heat of formation + Delta-G solvation = 81.306095 kcal Electronic energy + Delta-G solvation = -28660.283033 eV Core-core repulsion = 24744.615047 eV Total energy + Delta-G solvation = -3915.667986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.99923 -41.18651 -39.96629 -38.65604 -36.46789 -34.74911 -33.52895 -32.81953 -32.41621 -31.41698 -30.64683 -29.96232 -26.80940 -26.17156 -24.56707 -24.29071 -23.53403 -22.55575 -21.86820 -21.58785 -20.34994 -19.43919 -19.08601 -18.10297 -17.73068 -17.23480 -17.11419 -16.61550 -16.31069 -15.92369 -15.57624 -15.47635 -15.19647 -15.07941 -14.94925 -14.68515 -14.49655 -14.22371 -14.04232 -13.83107 -13.76002 -13.67742 -13.10198 -12.95367 -12.80300 -12.60635 -12.41985 -12.16228 -12.07787 -11.94356 -11.83475 -11.72228 -11.63707 -11.32287 -11.23329 -10.99155 -10.36951 -10.01583 -9.80518 -9.27473 -9.07513 -7.99356 -5.29563 -0.31307 0.33994 0.63738 1.24196 1.25643 1.43851 1.46061 1.56325 1.85781 2.22270 2.53569 2.78521 3.07733 3.32843 3.51438 3.60099 3.70922 3.81800 3.90815 3.94069 4.02107 4.10977 4.23201 4.25226 4.29978 4.41919 4.44087 4.46835 4.56997 4.61667 4.66168 4.73820 4.82338 4.88424 4.97681 5.03141 5.07643 5.10250 5.14409 5.24125 5.32258 5.38524 5.39526 5.45440 5.52137 5.71103 6.02448 6.21984 6.38609 6.68108 7.01207 7.28803 7.98322 8.28009 9.24001 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019895 B = 0.002297 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.037575 B =12189.479890 C =12794.599562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.071 4.071 3 Si 0.978 3.022 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.734 5.734 10 C 0.156 3.844 11 C 0.137 3.863 12 H 0.058 0.942 13 C -0.116 4.116 14 C -0.118 4.118 15 C 0.108 3.892 16 N -0.599 5.599 17 C 0.604 3.396 18 O -0.570 6.570 19 C -0.027 4.027 20 C -0.189 4.189 21 C 0.002 3.998 22 N -0.233 5.233 23 C 0.102 3.898 24 C -0.126 4.126 25 C -0.096 4.096 26 C -0.116 4.116 27 C -0.103 4.103 28 C -0.127 4.127 29 N -0.260 5.260 30 H 0.254 0.746 31 H 0.378 0.622 32 H 0.016 0.984 33 H 0.005 0.995 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.171 0.829 41 H 0.232 0.768 42 H 0.155 0.845 43 H 0.164 0.836 44 H 0.157 0.843 45 H 0.152 0.848 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.243 -35.504 5.622 37.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.378 5.378 10 C 0.028 3.972 11 C 0.033 3.967 12 H 0.076 0.924 13 C -0.154 4.154 14 C -0.156 4.156 15 C -0.014 4.014 16 N -0.332 5.332 17 C 0.392 3.608 18 O -0.448 6.448 19 C -0.186 4.186 20 C -0.216 4.216 21 C -0.137 4.137 22 N -0.015 5.015 23 C 0.012 3.988 24 C -0.147 4.147 25 C -0.115 4.115 26 C -0.134 4.134 27 C -0.122 4.122 28 C -0.147 4.147 29 N -0.095 5.095 30 H 0.063 0.937 31 H 0.211 0.789 32 H 0.034 0.966 33 H 0.023 0.977 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.188 0.812 41 H 0.248 0.752 42 H 0.173 0.827 43 H 0.182 0.818 44 H 0.175 0.825 45 H 0.170 0.830 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.009 -35.296 6.107 36.936 hybrid contribution 0.330 1.879 -1.161 2.233 sum 9.339 -33.417 4.946 35.048 Atomic orbital electron populations 1.69810 1.06419 1.26268 1.58955 1.25587 0.96582 1.01016 1.03131 0.85022 0.77911 0.79416 0.77063 1.19624 1.21685 1.21118 1.19573 0.91206 0.85351 1.42117 0.91593 1.42297 1.05602 1.00447 1.89447 1.20880 0.93993 0.85538 0.96817 1.21638 0.92646 0.82660 0.99780 0.92424 1.22601 0.99403 0.98205 0.95173 1.22814 0.95751 0.93019 1.04030 1.22531 0.96720 0.95082 0.87045 1.48418 1.42537 1.17372 1.24856 1.16979 0.78489 0.84064 0.81296 1.90805 1.66936 1.53228 1.33816 1.21766 1.04105 0.96177 0.96539 1.22054 1.00369 0.96795 1.02425 1.23591 1.02517 0.99643 0.87994 1.43113 1.28028 1.14090 1.16274 1.18093 1.01987 0.86107 0.92608 1.21216 0.97964 0.92981 1.02494 1.21437 0.99277 0.97066 0.93696 1.21745 0.95139 0.99456 0.97064 1.21407 0.98430 0.92456 0.99861 1.21132 1.00086 1.00278 0.93168 1.73553 1.14113 0.97402 1.24403 0.93683 0.78886 0.96642 0.97714 0.90758 0.89672 0.86631 0.89749 0.88678 0.91069 0.81168 0.75211 0.82704 0.81800 0.82502 0.82987 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.05 13.06 21.65 0.28 -60.77 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.98 48.70 29.55 68.60 2.03 50.73 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.25 -15.35 9.99 84.03 0.84 -14.51 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 9 N -0.73 -41.45 5.45 -343.45 -1.87 -43.32 16 10 C 0.16 7.60 5.65 86.38 0.49 8.09 16 11 C 0.14 5.40 2.93 45.34 0.13 5.53 16 12 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 13 C -0.12 -3.63 6.05 31.78 0.19 -3.44 16 14 C -0.12 -2.62 7.07 31.92 0.23 -2.40 16 15 C 0.11 2.79 5.97 86.78 0.52 3.31 16 16 N -0.60 -21.18 3.07 -792.05 -2.43 -23.60 16 17 C 0.60 23.43 7.58 86.73 0.66 24.09 16 18 O -0.57 -26.81 16.11 -3.95 -0.06 -26.87 16 19 C -0.03 -0.83 6.95 42.45 0.30 -0.53 16 20 C -0.19 -4.76 10.80 22.42 0.24 -4.52 16 21 C 0.00 0.03 10.78 83.40 0.90 0.93 16 22 N -0.23 -4.82 3.52 -187.30 -0.66 -5.48 16 23 C 0.10 1.60 6.66 38.11 0.25 1.85 16 24 C -0.13 -1.15 9.43 22.39 0.21 -0.94 16 25 C -0.10 -0.52 10.04 22.25 0.22 -0.30 16 26 C -0.12 -0.66 10.04 22.29 0.22 -0.44 16 27 C -0.10 -0.93 10.04 22.25 0.22 -0.71 16 28 C -0.13 -1.87 9.59 22.39 0.21 -1.66 16 29 N -0.26 -6.85 8.42 -48.17 -0.41 -7.26 16 30 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.38 21.82 7.42 -92.71 -0.69 21.13 16 32 H 0.02 0.76 8.05 -2.39 -0.02 0.74 16 33 H 0.00 0.26 6.91 -2.39 -0.02 0.25 16 34 H 0.07 2.47 7.78 -2.39 -0.02 2.45 16 35 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.10 2.27 6.53 -2.39 -0.02 2.25 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.17 4.04 8.06 -2.91 -0.02 4.01 16 41 H 0.23 1.55 6.96 -2.91 -0.02 1.53 16 42 H 0.16 0.62 6.65 -2.91 -0.02 0.60 16 43 H 0.16 -0.09 8.06 -2.91 -0.02 -0.11 16 44 H 0.16 0.04 8.06 -2.91 -0.02 0.02 16 45 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 46 H 0.13 2.12 7.65 -2.91 -0.02 2.10 16 Total: -1.00 -83.77 382.59 3.51 -80.26 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.32 Total: 25.78 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 6.31 Total: 10.54 kcal Atomic # 7 Polarization: -135.35 SS G_CDS: -5.08 Total: -140.44 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.06 Total: -26.87 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Total: -83.77 3.51 -80.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270083650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.567 kcal (2) G-P(sol) polarization free energy of solvation -83.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds