Wall clock time and date at job start Sat Apr 11 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99726 * 2 1 4 4 H 1.48498 * 109.47256 * 272.77063 * 3 2 1 5 5 H 1.48502 * 109.47395 * 32.77134 * 3 2 1 6 6 H 1.48498 * 109.47014 * 152.77076 * 3 2 1 7 7 C 1.38806 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00160 * 6.91604 * 7 2 1 9 9 N 1.36936 * 120.00083 * 186.91052 * 7 2 1 10 10 C 1.46502 * 119.99825 * 187.68535 * 9 7 2 11 11 C 1.52997 * 109.47083 * 187.41128 * 10 9 7 12 12 H 1.09006 * 110.00096 * 313.60146 * 11 10 9 13 13 C 1.54323 * 109.88863 * 192.50226 * 11 10 9 14 14 C 1.55157 * 102.94523 * 218.39199 * 13 11 10 15 15 C 1.54691 * 101.67551 * 35.33237 * 14 13 11 16 16 N 1.47020 * 109.88242 * 74.69060 * 11 10 9 17 17 C 1.34778 * 125.65056 * 298.32621 * 16 11 10 18 18 O 1.21572 * 120.00144 * 4.62007 * 17 16 11 19 19 C 1.47656 * 120.00183 * 184.62539 * 17 16 11 20 20 C 1.40244 * 120.49291 * 156.90485 * 19 17 16 21 21 C 1.38007 * 118.35344 * 179.72725 * 20 19 17 22 22 C 1.39181 * 119.25892 * 0.47138 * 21 20 19 23 23 N 1.39409 * 119.53352 * 179.79322 * 22 21 20 24 24 C 1.36716 * 125.68832 * 179.73159 * 23 22 21 25 25 C 1.34774 * 108.18642 * 180.24920 * 24 23 22 26 26 C 1.41019 * 107.50061 * 359.64094 * 25 24 23 27 27 C 1.34775 * 107.49911 * 0.35721 * 26 25 24 28 28 N 1.32456 * 120.93634 * 359.52091 * 22 21 20 29 29 C 1.31631 * 121.79852 * 0.24933 * 28 22 21 30 30 H 0.96997 * 120.00127 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00222 * 7.68827 * 9 7 2 32 32 H 1.08998 * 109.46983 * 67.41538 * 10 9 7 33 33 H 1.08997 * 109.47497 * 307.40933 * 10 9 7 34 34 H 1.09013 * 110.71370 * 336.75506 * 13 11 10 35 35 H 1.08996 * 110.72056 * 100.02078 * 13 11 10 36 36 H 1.08995 * 111.00182 * 153.57420 * 14 13 11 37 37 H 1.09000 * 111.00190 * 277.38578 * 14 13 11 38 38 H 1.09004 * 110.38809 * 204.36593 * 15 14 13 39 39 H 1.08992 * 110.24017 * 82.11602 * 15 14 13 40 40 H 1.07994 * 120.82350 * 359.97438 * 20 19 17 41 41 H 1.07996 * 120.37057 * 180.26982 * 21 20 19 42 42 H 1.08000 * 125.90362 * 359.97438 * 24 23 22 43 43 H 1.07999 * 126.25041 * 179.77534 * 25 24 23 44 44 H 1.08000 * 126.25464 * 180.13768 * 26 25 24 45 45 H 1.08005 * 125.90375 * 179.74313 * 27 26 25 46 46 H 1.08005 * 119.68141 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4390 2.0803 -1.3984 5 1 1.4781 2.6351 0.7578 6 1 3.5757 1.4240 0.6406 7 6 2.0103 -1.2021 0.0005 8 1 1.4762 -2.1341 -0.1117 9 7 3.3722 -1.2063 0.1432 10 6 4.1223 -2.4535 -0.0240 11 6 5.5842 -2.2256 0.3657 12 1 5.9526 -1.3065 -0.0901 13 6 6.4432 -3.4215 -0.0961 14 6 7.4497 -3.5980 1.0715 15 6 6.5762 -3.2343 2.2953 16 7 5.7043 -2.1409 1.8286 17 6 5.1189 -1.2140 2.6125 18 8 4.3545 -0.4026 2.1274 19 6 5.4060 -1.1838 4.0606 20 6 5.2248 -0.0044 4.7976 21 6 5.5011 -0.0274 6.1495 22 6 5.9563 -1.2072 6.7308 23 7 6.2413 -1.2357 8.0952 24 6 6.6882 -2.3224 8.7941 25 6 6.8422 -1.9594 10.0828 26 6 6.4863 -0.5987 10.1856 27 6 6.1202 -0.1818 8.9574 28 7 6.1174 -2.3049 6.0072 29 6 5.8614 -2.3284 4.7162 30 1 -0.4850 0.8400 -0.0004 31 1 3.8402 -0.3835 0.3550 32 1 4.0694 -2.7726 -1.0649 33 1 3.6921 -3.2248 0.6148 34 1 5.8292 -4.3145 -0.2143 35 1 6.9656 -3.1859 -1.0233 36 1 7.8009 -4.6280 1.1322 37 1 8.2870 -2.9070 0.9734 38 1 7.2018 -2.8945 3.1208 39 1 5.9779 -4.0928 2.6001 40 1 4.8738 0.8982 4.3198 41 1 5.3688 0.8610 6.7490 42 1 6.8801 -3.3034 8.3851 43 1 7.1789 -2.5941 10.8892 44 1 6.5007 -0.0010 11.0849 45 1 5.7879 0.8129 8.6991 46 1 6.0052 -3.2424 4.1590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277964147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:25 Heat of formation + Delta-G solvation = 94.563293 kcal Electronic energy + Delta-G solvation = -29378.382954 eV Core-core repulsion = 25463.289844 eV Total energy + Delta-G solvation = -3915.093110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.82607 -41.72642 -40.37147 -38.47985 -36.48474 -34.66630 -33.89452 -33.54339 -32.70429 -31.02691 -30.22828 -29.84892 -26.99794 -25.90885 -25.00664 -24.28404 -23.25764 -22.14433 -21.46216 -21.20027 -20.58774 -19.81150 -19.56587 -18.42294 -17.77323 -17.41845 -16.62999 -16.50965 -16.41307 -16.26155 -15.61493 -15.43905 -14.90499 -14.82478 -14.71552 -14.62912 -14.37953 -14.34645 -14.30603 -13.89848 -13.74910 -13.52640 -13.32779 -13.27355 -13.02423 -12.97318 -12.73901 -12.06897 -11.95241 -11.89927 -11.76146 -11.55145 -11.30845 -11.21095 -10.98754 -10.94984 -10.65063 -9.69987 -9.33736 -9.27584 -9.09914 -8.01108 -5.26710 -0.76063 -0.08203 1.13713 1.33859 1.38420 1.47200 1.55564 1.88060 1.89354 2.01949 2.54250 2.61745 3.03984 3.30068 3.33743 3.46897 3.54624 3.61261 3.69664 3.79211 3.95813 4.11737 4.19694 4.23401 4.25134 4.32583 4.37441 4.45684 4.51799 4.63236 4.69507 4.74042 4.77197 4.84448 4.86022 5.02626 5.11658 5.12947 5.17865 5.23595 5.28655 5.39610 5.48244 5.76593 5.82079 6.00409 6.24761 6.25335 6.48378 6.58536 7.08526 7.27100 8.02565 8.25979 9.21319 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011990 B = 0.003331 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.680868 B = 8404.862881 C =10165.278514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.990 5.990 2 C -0.065 4.065 3 Si 0.950 3.050 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.245 1.245 7 C -0.217 4.217 8 H 0.046 0.954 9 N -0.749 5.749 10 C 0.142 3.858 11 C 0.129 3.871 12 H 0.063 0.937 13 C -0.115 4.115 14 C -0.117 4.117 15 C 0.073 3.927 16 N -0.609 5.609 17 C 0.558 3.442 18 O -0.538 6.538 19 C -0.205 4.205 20 C 0.000 4.000 21 C -0.186 4.186 22 C 0.358 3.642 23 N -0.406 5.406 24 C -0.012 4.012 25 C -0.197 4.197 26 C -0.186 4.186 27 C -0.027 4.027 28 N -0.515 5.515 29 C 0.158 3.842 30 H 0.254 0.746 31 H 0.380 0.620 32 H 0.035 0.965 33 H 0.016 0.984 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.162 0.838 44 H 0.167 0.833 45 H 0.191 0.809 46 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.566 -6.895 16.143 30.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.642 5.642 2 C -0.255 4.255 3 Si 0.779 3.221 4 H -0.212 1.212 5 H -0.229 1.229 6 H -0.170 1.170 7 C -0.349 4.349 8 H 0.064 0.936 9 N -0.401 5.401 10 C 0.015 3.985 11 C 0.025 3.975 12 H 0.081 0.919 13 C -0.153 4.153 14 C -0.155 4.155 15 C -0.048 4.048 16 N -0.343 5.343 17 C 0.347 3.653 18 O -0.415 6.415 19 C -0.211 4.211 20 C -0.026 4.026 21 C -0.208 4.208 22 C 0.130 3.870 23 N -0.082 5.082 24 C -0.136 4.136 25 C -0.220 4.220 26 C -0.210 4.210 27 C -0.151 4.151 28 N -0.227 5.227 29 C 0.000 4.000 30 H 0.062 0.938 31 H 0.221 0.779 32 H 0.053 0.947 33 H 0.034 0.966 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.137 0.863 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.168 0.832 41 H 0.192 0.808 42 H 0.191 0.809 43 H 0.180 0.820 44 H 0.184 0.816 45 H 0.208 0.792 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 24.221 -7.231 16.060 29.947 hybrid contribution -0.962 1.881 -0.550 2.183 sum 23.259 -5.350 15.510 28.463 Atomic orbital electron populations 1.69910 1.07061 1.26223 1.60979 1.25382 0.95919 1.01000 1.03217 0.85432 0.79680 0.79868 0.77137 1.21244 1.22878 1.16971 1.19024 0.84136 0.92810 1.38929 0.93620 1.43293 1.03172 1.08399 1.85281 1.21209 0.90965 0.88559 0.97766 1.21979 0.94845 1.00633 0.80023 0.91923 1.22660 0.96797 0.95843 1.00038 1.22771 0.96689 1.04602 0.91419 1.23077 0.92805 0.89242 0.99659 1.48462 1.49048 1.29367 1.07416 1.18037 0.80042 0.81227 0.86004 1.90817 1.35080 1.41027 1.74591 1.20900 1.08232 0.97478 0.94452 1.21679 0.90075 0.98035 0.92854 1.21694 1.04598 0.99126 0.95368 1.18708 0.93140 0.90823 0.84324 1.41648 1.50852 1.11966 1.03778 1.22380 1.05837 0.93027 0.92388 1.21445 1.07682 0.96962 0.95958 1.21448 1.05822 0.96222 0.97473 1.22497 1.09465 0.93722 0.89397 1.67130 1.20348 1.27277 1.07945 1.23911 0.89421 0.98499 0.88199 0.93771 0.77891 0.94746 0.96606 0.89350 0.88006 0.86314 0.89765 0.88491 0.89206 0.83216 0.80816 0.80894 0.82029 0.81596 0.79197 0.77731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -68.67 13.97 21.65 0.30 -68.37 16 2 C -0.06 -4.20 5.50 84.86 0.47 -3.74 16 3 Si 0.95 51.82 28.02 68.60 1.92 53.74 16 4 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 5 H -0.30 -16.48 7.11 99.48 0.71 -15.77 16 6 H -0.25 -12.79 5.41 99.48 0.54 -12.25 16 7 C -0.22 -13.72 10.46 84.03 0.88 -12.84 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 9 N -0.75 -39.28 3.84 -343.46 -1.32 -40.60 16 10 C 0.14 5.71 5.62 86.38 0.49 6.20 16 11 C 0.13 3.71 3.09 45.34 0.14 3.85 16 12 H 0.06 1.97 8.13 -2.38 -0.02 1.95 16 13 C -0.12 -1.92 6.45 31.78 0.21 -1.71 16 14 C -0.12 -1.27 7.07 31.91 0.23 -1.05 16 15 C 0.07 1.15 5.00 86.78 0.43 1.58 16 16 N -0.61 -16.77 3.07 -792.07 -2.43 -19.20 16 17 C 0.56 19.31 7.51 86.73 0.65 19.96 16 18 O -0.54 -24.63 11.97 -3.94 -0.05 -24.68 16 19 C -0.20 -5.70 5.78 -19.99 -0.12 -5.82 16 20 C 0.00 0.00 9.71 22.70 0.22 0.22 16 21 C -0.19 -3.95 9.46 22.44 0.21 -3.74 16 22 C 0.36 8.24 7.48 132.92 0.99 9.23 16 23 N -0.41 -8.53 2.96 -352.10 -1.04 -9.57 16 24 C -0.01 -0.23 10.99 83.14 0.91 0.69 16 25 C -0.20 -3.28 10.86 22.16 0.24 -3.04 16 26 C -0.19 -2.90 10.86 22.16 0.24 -2.66 16 27 C -0.03 -0.45 10.71 83.14 0.89 0.44 16 28 N -0.51 -12.09 9.80 -191.88 -1.88 -13.97 16 29 C 0.16 3.57 9.18 85.04 0.78 4.35 16 30 H 0.25 16.78 8.31 -92.71 -0.77 16.01 16 31 H 0.38 19.99 2.98 -92.71 -0.28 19.71 16 32 H 0.03 1.34 8.10 -2.39 -0.02 1.32 16 33 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 1.41 7.85 -2.38 -0.02 1.39 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 1.26 5.85 -2.38 -0.01 1.24 16 39 H 0.09 1.19 7.44 -2.39 -0.02 1.18 16 40 H 0.15 4.01 7.89 -2.91 -0.02 3.99 16 41 H 0.17 2.57 6.66 -2.91 -0.02 2.55 16 42 H 0.17 3.08 8.03 -2.91 -0.02 3.06 16 43 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 44 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 45 H 0.19 2.10 6.96 -2.91 -0.02 2.08 16 46 H 0.21 3.49 4.17 -2.91 -0.01 3.48 16 Total: -1.00 -88.90 368.09 3.94 -84.96 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.57 Total: 25.74 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 7.87 Total: 11.94 kcal Atomic # 7 Polarization: -145.33 SS G_CDS: -6.37 Total: -151.70 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.05 Total: -24.68 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 1.92 Total: 53.74 kcal Total: -88.90 3.94 -84.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277964147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.526 kcal (2) G-P(sol) polarization free energy of solvation -88.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds