Wall clock time and date at job start Sat Apr 11 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86806 * 119.99800 * 2 1 4 4 H 1.48500 * 109.47193 * 89.99727 * 3 2 1 5 5 H 1.48508 * 109.47082 * 209.99404 * 3 2 1 6 6 H 1.48491 * 109.47226 * 329.99605 * 3 2 1 7 7 C 1.38818 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00095 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99617 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00055 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47434 * 172.93736 * 10 9 7 12 12 H 1.09001 * 109.87066 * 44.78878 * 11 10 9 13 13 C 1.54319 * 109.88154 * 165.81086 * 11 10 9 14 14 C 1.55156 * 102.94289 * 141.61250 * 13 11 10 15 15 C 1.54914 * 101.57976 * 324.49369 * 14 13 11 16 16 N 1.47018 * 109.87837 * 283.61865 * 11 10 9 17 17 C 1.34782 * 125.65474 * 61.62388 * 16 11 10 18 18 O 1.21579 * 119.99554 * 7.86139 * 17 16 11 19 19 C 1.47648 * 120.00396 * 187.87159 * 17 16 11 20 20 C 1.40250 * 120.49355 * 191.57808 * 19 17 16 21 21 C 1.38002 * 118.35261 * 179.75171 * 20 19 17 22 22 C 1.39172 * 119.26089 * 0.56070 * 21 20 19 23 23 N 1.39409 * 119.53313 * 179.69543 * 22 21 20 24 24 C 1.36716 * 125.68837 * 359.67487 * 23 22 21 25 25 C 1.34774 * 108.18767 * 179.86799 * 24 23 22 26 26 C 1.41019 * 107.49894 * 0.38682 * 25 24 23 27 27 C 1.34776 * 107.50314 * 359.75941 * 26 25 24 28 28 N 1.32451 * 120.93779 * 359.67832 * 22 21 20 29 29 C 1.31635 * 121.80239 * 0.02562 * 28 22 21 30 30 H 0.97006 * 119.99842 * 179.97438 * 1 2 3 31 31 H 0.97004 * 120.00455 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47056 * 292.93766 * 10 9 7 33 33 H 1.09003 * 109.46992 * 52.93770 * 10 9 7 34 34 H 1.09002 * 110.71550 * 259.97058 * 13 11 10 35 35 H 1.08997 * 110.72428 * 23.06624 * 13 11 10 36 36 H 1.08998 * 111.00983 * 82.56203 * 14 13 11 37 37 H 1.08999 * 111.00525 * 206.42567 * 14 13 11 38 38 H 1.09001 * 110.36665 * 155.85259 * 15 14 13 39 39 H 1.09001 * 110.36969 * 278.06420 * 15 14 13 40 40 H 1.07995 * 120.81677 * 359.97438 * 20 19 17 41 41 H 1.08000 * 120.36391 * 180.23300 * 21 20 19 42 42 H 1.07999 * 125.90374 * 0.02562 * 24 23 22 43 43 H 1.07997 * 126.24820 * 180.14678 * 25 24 23 44 44 H 1.08003 * 126.24721 * 179.76430 * 26 25 24 45 45 H 1.08000 * 125.90296 * 179.97438 * 27 26 25 46 46 H 1.07989 * 119.68847 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 1.4001 5 1 3.5478 1.4402 -0.6999 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0734 -4.8143 0.1779 12 1 0.2066 -4.6653 -0.4660 13 6 1.7641 -6.1492 -0.1720 14 6 1.1880 -7.1264 0.8865 15 6 1.0626 -6.2045 2.1252 16 7 0.6480 -4.8979 1.5827 17 6 -0.0115 -3.9388 2.2623 18 8 -0.4292 -2.9579 1.6780 19 6 -0.2265 -4.0793 3.7163 20 6 -1.1092 -3.2236 4.3912 21 6 -1.2807 -3.3976 5.7494 22 6 -0.5695 -4.4002 6.4019 23 7 -0.7336 -4.5768 7.7750 24 6 -1.5491 -3.8341 8.5829 25 6 -1.4392 -4.3068 9.8402 26 6 -0.5175 -5.3737 9.8131 27 6 -0.1015 -5.5177 8.5393 28 7 0.2609 -5.1891 5.7369 29 6 0.4500 -5.0619 4.4404 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.5866 -3.7711 -0.9459 33 1 2.7762 -3.6617 0.8206 34 1 1.4962 -6.4696 -1.1788 35 1 2.8459 -6.0616 -0.0717 36 1 0.2124 -7.5037 0.5801 37 1 1.8797 -7.9466 1.0785 38 1 0.3058 -6.5889 2.8091 39 1 2.0233 -6.1187 2.6331 40 1 -1.6442 -2.4500 3.8603 41 1 -1.9554 -2.7593 6.3006 42 1 -2.1751 -3.0126 8.2675 43 1 -1.9590 -3.9338 10.7103 44 1 -0.2024 -5.9671 10.6588 45 1 0.6087 -6.2497 8.1839 46 1 1.1350 -5.7242 3.9323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277964148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:29 Heat of formation + Delta-G solvation = 110.806937 kcal Electronic energy + Delta-G solvation = -29372.835407 eV Core-core repulsion = 25458.446674 eV Total energy + Delta-G solvation = -3914.388733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.95717 -40.63680 -39.29567 -37.22609 -34.69436 -33.60402 -32.86617 -31.80513 -31.34341 -29.56329 -29.14326 -28.52626 -25.41541 -24.45265 -23.95249 -22.99722 -21.95737 -21.29524 -20.57974 -20.36917 -19.28675 -18.72677 -17.67226 -16.83368 -16.65935 -16.41767 -15.59264 -15.39123 -15.32003 -14.40485 -14.20299 -14.04100 -13.88628 -13.71959 -13.53343 -13.41331 -13.33384 -13.27426 -12.95919 -12.92823 -12.56629 -12.49700 -12.28360 -12.06543 -11.65755 -11.20617 -10.96265 -10.72398 -10.60619 -10.40619 -10.20927 -10.12125 -10.05393 -9.90300 -9.40580 -8.97717 -8.71974 -8.50323 -8.45897 -8.33864 -6.72192 -5.86738 -2.83362 0.25895 0.93952 2.03330 2.34033 2.75854 3.01637 3.11233 3.58971 3.65067 3.74465 3.78708 3.95987 4.35499 4.40887 4.41734 4.63218 4.68442 4.76238 4.79265 4.85191 4.93676 5.09793 5.14625 5.22275 5.23389 5.24726 5.34083 5.40396 5.62282 5.66952 5.71119 5.79155 5.82074 5.86748 5.94354 5.97320 6.00846 6.09909 6.14894 6.30556 6.35933 6.61471 6.69552 6.75913 6.83624 7.09619 7.53906 7.69709 7.98687 8.47363 9.05475 9.57290 10.40920 10.58011 11.64063 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.003347 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.061636 B = 8363.692202 C =10410.319540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.043 4.043 3 Si 1.078 2.922 4 H -0.299 1.299 5 H -0.297 1.297 6 H -0.289 1.289 7 C -0.333 4.333 8 H 0.055 0.945 9 N -0.735 5.735 10 C 0.151 3.849 11 C 0.130 3.870 12 H 0.076 0.924 13 C -0.124 4.124 14 C -0.131 4.131 15 C 0.086 3.914 16 N -0.612 5.612 17 C 0.570 3.430 18 O -0.474 6.474 19 C -0.185 4.185 20 C 0.013 3.987 21 C -0.193 4.193 22 C 0.360 3.640 23 N -0.395 5.395 24 C -0.014 4.014 25 C -0.182 4.182 26 C -0.198 4.198 27 C 0.013 3.987 28 N -0.508 5.508 29 C 0.140 3.860 30 H 0.265 0.735 31 H 0.383 0.617 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.160 0.840 41 H 0.147 0.853 42 H 0.169 0.831 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.170 0.830 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 -17.798 13.648 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.227 1.227 5 H -0.224 1.224 6 H -0.215 1.215 7 C -0.464 4.464 8 H 0.073 0.927 9 N -0.386 5.386 10 C 0.022 3.978 11 C 0.027 3.973 12 H 0.094 0.906 13 C -0.163 4.163 14 C -0.169 4.169 15 C -0.037 4.037 16 N -0.349 5.349 17 C 0.356 3.644 18 O -0.345 6.345 19 C -0.191 4.191 20 C -0.013 4.013 21 C -0.215 4.215 22 C 0.133 3.867 23 N -0.070 5.070 24 C -0.140 4.140 25 C -0.206 4.206 26 C -0.222 4.222 27 C -0.113 4.113 28 N -0.220 5.220 29 C -0.018 4.018 30 H 0.076 0.924 31 H 0.222 0.778 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.177 0.823 41 H 0.165 0.835 42 H 0.186 0.814 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.187 0.813 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.371 -16.098 13.538 21.078 hybrid contribution -0.271 -1.015 -0.234 1.077 sum -1.642 -17.113 13.304 21.738 Atomic orbital electron populations 1.70691 1.05921 1.29354 1.52803 1.25596 0.97201 1.00462 1.00909 0.83271 0.73847 0.75832 0.75989 1.22698 1.22419 1.21520 1.19970 0.91489 0.86268 1.48681 0.92662 1.42707 1.06043 0.99917 1.89961 1.20954 0.93130 0.85971 0.97770 1.21932 0.97992 0.95789 0.81569 0.90622 1.22644 1.00857 0.93308 0.99455 1.22788 1.02083 0.97356 0.94713 1.22695 0.99754 0.84061 0.97208 1.48283 1.57865 1.15926 1.12789 1.17447 0.79034 0.82449 0.85421 1.90867 1.46948 1.28283 1.68439 1.21042 1.02287 1.00010 0.95743 1.21684 0.92176 0.94934 0.92534 1.21514 1.04018 1.00482 0.95444 1.18450 0.92690 0.92060 0.83510 1.41481 1.34558 1.27305 1.03690 1.21962 1.00756 1.01013 0.90228 1.21047 1.03310 0.99968 0.96296 1.21072 1.02836 1.02093 0.96229 1.22102 1.02029 0.96585 0.90580 1.67057 1.18003 1.26887 1.10029 1.23908 0.95493 0.94691 0.87703 0.92363 0.77797 0.96237 0.96219 0.89936 0.90156 0.90483 0.89731 0.90224 0.90856 0.82259 0.83520 0.81415 0.83849 0.83999 0.81296 0.79560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.08 13.70 55.49 0.76 -30.32 16 2 C -0.04 -1.33 5.50 -17.43 -0.10 -1.43 16 3 Si 1.08 27.65 29.92 -169.99 -5.09 22.56 16 4 H -0.30 -7.49 7.11 56.52 0.40 -7.08 16 5 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 7 C -0.33 -10.09 9.99 -15.06 -0.15 -10.24 16 8 H 0.06 1.66 7.83 -52.49 -0.41 1.24 16 9 N -0.74 -20.01 4.46 -59.90 -0.27 -20.28 16 10 C 0.15 3.19 5.61 -4.04 -0.02 3.17 16 11 C 0.13 2.12 3.02 -66.96 -0.20 1.91 16 12 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 13 C -0.12 -1.36 6.44 -24.90 -0.16 -1.52 16 14 C -0.13 -1.11 7.09 -24.58 -0.17 -1.28 16 15 C 0.09 0.88 4.90 -2.52 -0.01 0.87 16 16 N -0.61 -9.45 3.06 -164.18 -0.50 -9.95 16 17 C 0.57 10.54 7.46 -12.42 -0.09 10.44 16 18 O -0.47 -11.20 13.14 5.30 0.07 -11.13 16 19 C -0.18 -2.85 5.84 -104.81 -0.61 -3.46 16 20 C 0.01 0.19 9.70 -38.91 -0.38 -0.19 16 21 C -0.19 -2.39 9.46 -39.32 -0.37 -2.76 16 22 C 0.36 4.75 7.48 -154.56 -1.16 3.59 16 23 N -0.40 -4.79 2.96 -62.65 -0.19 -4.97 16 24 C -0.01 -0.15 10.71 -16.60 -0.18 -0.33 16 25 C -0.18 -1.76 10.86 -39.76 -0.43 -2.19 16 26 C -0.20 -1.97 10.86 -39.76 -0.43 -2.41 16 27 C 0.01 0.15 10.99 -16.60 -0.18 -0.04 16 28 N -0.51 -6.81 9.80 -12.01 -0.12 -6.92 16 29 C 0.14 1.83 9.43 -17.15 -0.16 1.67 16 30 H 0.26 8.80 6.72 -40.82 -0.27 8.52 16 31 H 0.38 10.92 3.93 -40.82 -0.16 10.76 16 32 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.71 6.34 -51.93 -0.33 0.38 16 39 H 0.07 0.67 7.10 -51.93 -0.37 0.30 16 40 H 0.16 2.39 7.77 -52.49 -0.41 1.98 16 41 H 0.15 1.40 6.66 -52.49 -0.35 1.05 16 42 H 0.17 1.29 6.96 -52.49 -0.37 0.93 16 43 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 45 H 0.17 1.70 8.03 -52.49 -0.42 1.28 16 46 H 0.19 1.98 3.57 -52.49 -0.19 1.80 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -38.46 371.31 -10.40 -48.86 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -5.86 Total: 10.74 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -4.81 Total: -4.18 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -0.31 Total: -72.44 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.07 Total: -11.13 kcal Atomic # 14 Polarization: 27.65 SS G_CDS: -5.09 Total: 22.56 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.46 -10.40 -48.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277964148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.667 kcal (2) G-P(sol) polarization free energy of solvation -38.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds