Wall clock time and date at job start Sat Apr 11 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86806 * 119.99800 * 2 1 4 4 H 1.48500 * 109.47193 * 89.99727 * 3 2 1 5 5 H 1.48508 * 109.47082 * 209.99404 * 3 2 1 6 6 H 1.48491 * 109.47226 * 329.99605 * 3 2 1 7 7 C 1.38818 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00095 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99617 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00055 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47434 * 172.93736 * 10 9 7 12 12 H 1.09001 * 109.87066 * 44.78878 * 11 10 9 13 13 C 1.54319 * 109.88154 * 165.81086 * 11 10 9 14 14 C 1.55156 * 102.94289 * 141.61250 * 13 11 10 15 15 C 1.54914 * 101.57976 * 324.49369 * 14 13 11 16 16 N 1.47018 * 109.87837 * 283.61865 * 11 10 9 17 17 C 1.34782 * 125.65474 * 61.62388 * 16 11 10 18 18 O 1.21579 * 119.99554 * 7.86139 * 17 16 11 19 19 C 1.47648 * 120.00396 * 187.87159 * 17 16 11 20 20 C 1.40250 * 120.49355 * 191.57808 * 19 17 16 21 21 C 1.38002 * 118.35261 * 179.75171 * 20 19 17 22 22 C 1.39172 * 119.26089 * 0.56070 * 21 20 19 23 23 N 1.39409 * 119.53313 * 179.69543 * 22 21 20 24 24 C 1.36716 * 125.68837 * 359.67487 * 23 22 21 25 25 C 1.34774 * 108.18767 * 179.86799 * 24 23 22 26 26 C 1.41019 * 107.49894 * 0.38682 * 25 24 23 27 27 C 1.34776 * 107.50314 * 359.75941 * 26 25 24 28 28 N 1.32451 * 120.93779 * 359.67832 * 22 21 20 29 29 C 1.31635 * 121.80239 * 0.02562 * 28 22 21 30 30 H 0.97006 * 119.99842 * 179.97438 * 1 2 3 31 31 H 0.97004 * 120.00455 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47056 * 292.93766 * 10 9 7 33 33 H 1.09003 * 109.46992 * 52.93770 * 10 9 7 34 34 H 1.09002 * 110.71550 * 259.97058 * 13 11 10 35 35 H 1.08997 * 110.72428 * 23.06624 * 13 11 10 36 36 H 1.08998 * 111.00983 * 82.56203 * 14 13 11 37 37 H 1.08999 * 111.00525 * 206.42567 * 14 13 11 38 38 H 1.09001 * 110.36665 * 155.85259 * 15 14 13 39 39 H 1.09001 * 110.36969 * 278.06420 * 15 14 13 40 40 H 1.07995 * 120.81677 * 359.97438 * 20 19 17 41 41 H 1.08000 * 120.36391 * 180.23300 * 21 20 19 42 42 H 1.07999 * 125.90374 * 0.02562 * 24 23 22 43 43 H 1.07997 * 126.24820 * 180.14678 * 25 24 23 44 44 H 1.08003 * 126.24721 * 179.76430 * 26 25 24 45 45 H 1.08000 * 125.90296 * 179.97438 * 27 26 25 46 46 H 1.07989 * 119.68847 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 1.4001 5 1 3.5478 1.4402 -0.6999 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0734 -4.8143 0.1779 12 1 0.2066 -4.6653 -0.4660 13 6 1.7641 -6.1492 -0.1720 14 6 1.1880 -7.1264 0.8865 15 6 1.0626 -6.2045 2.1252 16 7 0.6480 -4.8979 1.5827 17 6 -0.0115 -3.9388 2.2623 18 8 -0.4292 -2.9579 1.6780 19 6 -0.2265 -4.0793 3.7163 20 6 -1.1092 -3.2236 4.3912 21 6 -1.2807 -3.3976 5.7494 22 6 -0.5695 -4.4002 6.4019 23 7 -0.7336 -4.5768 7.7750 24 6 -1.5491 -3.8341 8.5829 25 6 -1.4392 -4.3068 9.8402 26 6 -0.5175 -5.3737 9.8131 27 6 -0.1015 -5.5177 8.5393 28 7 0.2609 -5.1891 5.7369 29 6 0.4500 -5.0619 4.4404 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.5866 -3.7711 -0.9459 33 1 2.7762 -3.6617 0.8206 34 1 1.4962 -6.4696 -1.1788 35 1 2.8459 -6.0616 -0.0717 36 1 0.2124 -7.5037 0.5801 37 1 1.8797 -7.9466 1.0785 38 1 0.3058 -6.5889 2.8091 39 1 2.0233 -6.1187 2.6331 40 1 -1.6442 -2.4500 3.8603 41 1 -1.9554 -2.7593 6.3006 42 1 -2.1751 -3.0126 8.2675 43 1 -1.9590 -3.9338 10.7103 44 1 -0.2024 -5.9671 10.6588 45 1 0.6087 -6.2497 8.1839 46 1 1.1350 -5.7242 3.9323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277964148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:29 Heat of formation + Delta-G solvation = 86.630625 kcal Electronic energy + Delta-G solvation = -29373.883771 eV Core-core repulsion = 25458.446674 eV Total energy + Delta-G solvation = -3915.437097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.84749 -41.75764 -40.38564 -38.53655 -36.64343 -34.72181 -33.92309 -33.33804 -32.70549 -30.73831 -30.07686 -29.79076 -26.79604 -25.85615 -25.06053 -24.60797 -23.44314 -22.22901 -21.47389 -21.20378 -20.56790 -19.62523 -19.34001 -18.54325 -17.78308 -17.54367 -16.96221 -16.53496 -16.31152 -15.83187 -15.52995 -15.48664 -15.21389 -14.95835 -14.84784 -14.71139 -14.40603 -14.34132 -14.24935 -13.95499 -13.75691 -13.51327 -13.28839 -13.03702 -12.94103 -12.61191 -12.55530 -12.19406 -12.02737 -11.87971 -11.64101 -11.32554 -11.29099 -11.17124 -11.01719 -10.92050 -10.72541 -9.71911 -9.35905 -9.28739 -8.95852 -8.32463 -5.21741 -0.80737 -0.11485 1.11115 1.44505 1.50878 1.63875 1.78033 1.81750 1.92203 2.01177 2.61706 2.71811 3.00633 3.31052 3.43246 3.46330 3.51836 3.60861 3.65011 3.76288 3.92724 4.10350 4.13479 4.19896 4.24941 4.27974 4.35074 4.43891 4.45472 4.61910 4.66739 4.68532 4.71002 4.78374 4.83545 4.95847 5.04749 5.09596 5.12733 5.22546 5.27605 5.33601 5.43967 5.57951 5.80653 5.99337 6.23630 6.44998 6.55164 6.60536 7.06071 7.33733 8.19725 8.30062 9.20706 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.003347 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.061636 B = 8363.692202 C =10410.319540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.107 4.107 3 Si 1.130 2.870 4 H -0.290 1.290 5 H -0.272 1.272 6 H -0.290 1.290 7 C -0.337 4.337 8 H 0.055 0.945 9 N -0.751 5.751 10 C 0.147 3.853 11 C 0.131 3.869 12 H 0.050 0.950 13 C -0.114 4.114 14 C -0.116 4.116 15 C 0.073 3.927 16 N -0.611 5.611 17 C 0.560 3.440 18 O -0.542 6.542 19 C -0.207 4.207 20 C 0.000 4.000 21 C -0.187 4.187 22 C 0.360 3.640 23 N -0.406 5.406 24 C -0.029 4.029 25 C -0.184 4.184 26 C -0.195 4.195 27 C -0.012 4.012 28 N -0.513 5.513 29 C 0.155 3.845 30 H 0.248 0.752 31 H 0.374 0.626 32 H 0.026 0.974 33 H 0.013 0.987 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.143 0.857 41 H 0.174 0.826 42 H 0.189 0.811 43 H 0.168 0.832 44 H 0.164 0.836 45 H 0.175 0.825 46 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 -20.095 15.574 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.299 4.299 3 Si 0.955 3.045 4 H -0.217 1.217 5 H -0.197 1.197 6 H -0.216 1.216 7 C -0.469 4.469 8 H 0.073 0.927 9 N -0.401 5.401 10 C 0.019 3.981 11 C 0.028 3.972 12 H 0.068 0.932 13 C -0.152 4.152 14 C -0.153 4.153 15 C -0.047 4.047 16 N -0.345 5.345 17 C 0.349 3.651 18 O -0.419 6.419 19 C -0.214 4.214 20 C -0.026 4.026 21 C -0.208 4.208 22 C 0.132 3.868 23 N -0.082 5.082 24 C -0.153 4.153 25 C -0.208 4.208 26 C -0.219 4.219 27 C -0.136 4.136 28 N -0.225 5.225 29 C -0.003 4.003 30 H 0.058 0.942 31 H 0.212 0.788 32 H 0.044 0.956 33 H 0.031 0.969 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.142 0.858 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.160 0.840 41 H 0.191 0.809 42 H 0.206 0.794 43 H 0.185 0.815 44 H 0.182 0.818 45 H 0.192 0.808 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.078 -18.506 15.499 24.139 hybrid contribution -0.696 -0.413 -0.708 1.075 sum -0.617 -18.919 14.791 24.022 Atomic orbital electron populations 1.70812 1.07112 1.28395 1.55565 1.27186 0.97265 1.04489 1.00934 0.82621 0.73606 0.71720 0.76557 1.21700 1.19728 1.21632 1.20352 0.91677 0.87822 1.47038 0.92672 1.42970 1.05979 1.01231 1.89920 1.21176 0.93916 0.85591 0.97378 1.21892 0.96281 0.96954 0.82123 0.93200 1.22650 1.00939 0.90396 1.01259 1.22822 1.03297 0.97092 0.92101 1.23112 1.01109 0.81770 0.98755 1.48399 1.56388 1.17188 1.12512 1.18025 0.78380 0.82063 0.86651 1.90829 1.50087 1.31110 1.69900 1.20915 1.04220 1.01961 0.94261 1.21661 0.92515 0.94857 0.93597 1.21671 1.04131 1.00621 0.94426 1.18695 0.92092 0.91678 0.84286 1.41645 1.35316 1.28056 1.03200 1.22502 1.00790 1.01523 0.90460 1.21452 1.02945 0.99527 0.96841 1.21453 1.02104 1.01960 0.96370 1.22402 1.02898 0.97138 0.91189 1.67162 1.18317 1.27128 1.09868 1.24202 0.94778 0.93862 0.87505 0.94153 0.78838 0.95629 0.96917 0.88323 0.89105 0.89869 0.85837 0.88465 0.88869 0.83968 0.80890 0.79380 0.81490 0.81846 0.80796 0.77121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -67.00 13.70 21.65 0.30 -66.70 16 2 C -0.11 -6.83 5.50 84.87 0.47 -6.36 16 3 Si 1.13 56.73 29.92 68.60 2.05 58.78 16 4 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 7 C -0.34 -21.09 9.99 84.04 0.84 -20.25 16 8 H 0.06 3.36 7.83 -2.91 -0.02 3.34 16 9 N -0.75 -42.86 4.46 -343.44 -1.53 -44.39 16 10 C 0.15 6.39 5.61 86.38 0.48 6.87 16 11 C 0.13 4.31 3.02 45.34 0.14 4.45 16 12 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 13 C -0.11 -2.20 6.44 31.78 0.20 -2.00 16 14 C -0.12 -1.49 7.09 31.99 0.23 -1.27 16 15 C 0.07 1.31 4.90 86.86 0.43 1.74 16 16 N -0.61 -18.95 3.06 -791.62 -2.43 -21.38 16 17 C 0.56 21.86 7.46 86.73 0.65 22.50 16 18 O -0.54 -27.84 13.14 -3.96 -0.05 -27.89 16 19 C -0.21 -6.60 5.84 -19.99 -0.12 -6.72 16 20 C 0.00 0.01 9.70 22.70 0.22 0.23 16 21 C -0.19 -4.60 9.46 22.44 0.21 -4.39 16 22 C 0.36 9.13 7.48 132.92 0.99 10.12 16 23 N -0.41 -9.18 2.96 -352.11 -1.04 -10.23 16 24 C -0.03 -0.53 10.71 83.14 0.89 0.36 16 25 C -0.18 -3.06 10.86 22.16 0.24 -2.82 16 26 C -0.20 -3.40 10.86 22.16 0.24 -3.16 16 27 C -0.01 -0.24 10.99 83.14 0.91 0.67 16 28 N -0.51 -13.08 9.80 -191.90 -1.88 -14.96 16 29 C 0.15 3.89 9.43 85.04 0.80 4.69 16 30 H 0.25 17.58 6.72 -92.70 -0.62 16.95 16 31 H 0.37 22.82 3.93 -92.71 -0.36 22.46 16 32 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 33 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.61 7.85 -2.39 -0.02 1.59 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 1.45 6.34 -2.39 -0.02 1.44 16 39 H 0.09 1.36 7.10 -2.39 -0.02 1.35 16 40 H 0.14 4.77 7.77 -2.91 -0.02 4.75 16 41 H 0.17 3.15 6.66 -2.91 -0.02 3.13 16 42 H 0.19 2.47 6.96 -2.91 -0.02 2.45 16 43 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 44 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 45 H 0.17 3.24 8.03 -2.91 -0.02 3.22 16 46 H 0.21 4.00 3.57 -2.92 -0.01 3.99 16 Total: -1.00 -89.48 371.31 4.05 -85.43 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.80 Total: 36.67 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 7.83 Total: 4.66 kcal Atomic # 7 Polarization: -151.07 SS G_CDS: -6.58 Total: -157.65 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.05 Total: -27.89 kcal Atomic # 14 Polarization: 56.73 SS G_CDS: 2.05 Total: 58.78 kcal Total: -89.48 4.05 -85.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277964148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.065 kcal (2) G-P(sol) polarization free energy of solvation -89.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds