Wall clock time and date at job start Sat Apr 11 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86791 * 120.00101 * 2 1 4 4 H 1.48494 * 109.47560 * 270.00338 * 3 2 1 5 5 H 1.48507 * 109.47156 * 30.00270 * 3 2 1 6 6 H 1.48507 * 109.47162 * 150.00091 * 3 2 1 7 7 C 1.38813 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99759 * 359.97438 * 7 2 1 9 9 N 1.36929 * 120.00308 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00422 * 183.67674 * 9 7 2 11 11 C 1.53009 * 112.84855 * 299.82742 * 10 9 7 12 12 N 1.46494 * 109.47275 * 294.06662 * 11 10 9 13 13 C 1.34771 * 120.00120 * 185.02398 * 12 11 10 14 14 O 1.21587 * 119.99951 * 359.97438 * 13 12 11 15 15 C 1.47600 * 120.00146 * 179.97438 * 13 12 11 16 16 C 1.39640 * 120.19131 * 356.51254 * 15 13 12 17 17 C 1.37848 * 119.91480 * 179.97438 * 16 15 13 18 18 C 1.38515 * 120.31380 * 0.02804 * 17 16 15 19 19 C 1.38083 * 120.38808 * 359.69682 * 18 17 16 20 20 C 1.38758 * 120.07145 * 0.55518 * 19 18 17 21 21 N 1.39702 * 120.15144 * 179.74391 * 20 19 18 22 22 C 1.35853 * 126.10512 * 276.54112 * 21 20 19 23 23 C 1.35284 * 107.61382 * 180.02562 * 22 21 20 24 24 C 1.39966 * 107.96854 * 0.02562 * 23 22 21 25 25 N 1.30822 * 108.36990 * 359.97438 * 24 23 22 26 26 C 1.53779 * 113.61707 * 71.02749 * 10 9 7 27 27 C 1.53946 * 87.02303 * 89.22872 * 26 10 9 28 28 C 1.53788 * 87.11278 * 25.36627 * 27 26 10 29 29 H 0.97001 * 120.00089 * 359.97438 * 1 2 3 30 30 H 0.97011 * 119.99592 * 3.67880 * 9 7 2 31 31 H 1.09004 * 109.46922 * 174.06669 * 11 10 9 32 32 H 1.08995 * 109.46695 * 54.06799 * 11 10 9 33 33 H 0.97003 * 120.00345 * 5.01574 * 12 11 10 34 34 H 1.07995 * 120.03828 * 359.95716 * 16 15 13 35 35 H 1.08004 * 119.83934 * 180.02562 * 17 16 15 36 36 H 1.08000 * 119.80876 * 179.97438 * 18 17 16 37 37 H 1.08001 * 119.96557 * 180.30058 * 19 18 17 38 38 H 1.07998 * 126.19366 * 0.02562 * 22 21 20 39 39 H 1.07997 * 126.01677 * 180.02562 * 23 22 21 40 40 H 1.08004 * 125.81746 * 179.97438 * 24 23 22 41 41 H 1.09005 * 113.61440 * 203.75661 * 26 10 9 42 42 H 1.09007 * 113.61178 * 334.64756 * 26 10 9 43 43 H 1.08998 * 113.53922 * 270.81804 * 27 26 10 44 44 H 1.09003 * 113.66574 * 139.93137 * 27 26 10 45 45 H 1.08998 * 113.61411 * 220.09514 * 28 27 26 46 46 H 1.08998 * 113.61187 * 89.18323 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4683 -0.0830 11 6 3.8022 -3.4104 1.0822 12 7 4.2973 -2.8235 2.3297 13 6 4.2264 -3.5241 3.4788 14 8 3.7509 -4.6432 3.4801 15 6 4.7258 -2.9330 4.7357 16 6 5.3385 -1.6782 4.7268 17 6 5.8024 -1.1313 5.9040 18 6 5.6643 -1.8209 7.0974 19 6 5.0554 -3.0599 7.1218 20 6 4.5873 -3.6279 5.9454 21 7 3.9758 -4.8838 5.9674 22 6 4.6116 -6.0842 5.9472 23 6 3.6645 -7.0496 5.9796 24 6 2.4125 -6.4251 6.0202 25 7 2.5974 -5.1300 6.0132 26 6 4.0228 -3.1435 -1.4617 27 6 5.2744 -2.3353 -1.8493 28 6 5.6164 -2.2936 -0.3505 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3638 0.0528 31 1 4.2906 -4.3701 0.9131 32 1 2.7247 -3.5585 1.1528 33 1 4.6764 -1.9306 2.3288 34 1 5.4490 -1.1372 3.7987 35 1 6.2757 -0.1606 5.8958 36 1 6.0311 -1.3849 8.0149 37 1 4.9471 -3.5895 8.0568 38 1 5.6797 -6.2396 5.9117 39 1 3.8429 -8.1147 5.9750 40 1 1.4566 -6.9269 6.0520 41 1 4.1901 -4.2203 -1.4322 42 1 3.1319 -2.8679 -2.0260 43 1 5.0470 -1.3570 -2.2727 44 1 5.9921 -2.8992 -2.4453 45 1 6.0100 -1.3327 -0.0191 46 1 6.2201 -3.1375 -0.0168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280507521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:39 Heat of formation + Delta-G solvation = 103.609453 kcal Electronic energy + Delta-G solvation = -29647.780731 eV Core-core repulsion = 25733.079892 eV Total energy + Delta-G solvation = -3914.700839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.33375 -41.14323 -40.25796 -39.16539 -35.58818 -35.29119 -34.26504 -32.73909 -32.39550 -31.04879 -30.03960 -28.82790 -26.71863 -25.77441 -24.87174 -24.27212 -23.10909 -21.91077 -21.80918 -21.40069 -20.06728 -19.65766 -19.26134 -18.44671 -17.40465 -16.81349 -16.44131 -16.37472 -16.15745 -15.98515 -15.95636 -15.59234 -15.22133 -14.78973 -14.73489 -14.70717 -14.62750 -14.34655 -14.04949 -13.65803 -13.44107 -13.20716 -13.17637 -13.04521 -13.00231 -12.62212 -12.48765 -12.15737 -11.84694 -11.66184 -11.65781 -11.58259 -11.17509 -11.00876 -10.84514 -10.35566 -10.25593 -10.09226 -9.91659 -9.51040 -9.34589 -8.01478 -5.37493 -0.39203 0.06013 1.00119 1.34165 1.41949 1.48357 1.64667 1.80495 2.01991 2.14048 2.48173 2.65462 3.27666 3.39401 3.58755 3.65196 3.70839 3.88975 3.90902 3.99478 3.99799 4.10757 4.13303 4.24548 4.27585 4.40070 4.53544 4.67618 4.70286 4.78397 4.81094 4.86840 4.86988 4.94048 5.09433 5.10622 5.13411 5.19455 5.25835 5.29846 5.34397 5.44646 5.59241 5.64038 5.81182 5.83107 6.21616 6.35469 6.52039 6.79621 7.07751 7.17964 7.79938 8.01191 9.20539 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010913 B = 0.003635 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.145287 B = 7700.046668 C = 8204.611462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.066 4.066 3 Si 0.959 3.041 4 H -0.280 1.280 5 H -0.303 1.303 6 H -0.237 1.237 7 C -0.217 4.217 8 H 0.043 0.957 9 N -0.721 5.721 10 C 0.161 3.839 11 C 0.138 3.862 12 N -0.695 5.695 13 C 0.538 3.462 14 O -0.564 6.564 15 C -0.142 4.142 16 C -0.082 4.082 17 C -0.101 4.101 18 C -0.072 4.072 19 C -0.112 4.112 20 C 0.158 3.842 21 N -0.330 5.330 22 C 0.065 3.935 23 C -0.271 4.271 24 C 0.033 3.967 25 N -0.326 5.326 26 C -0.155 4.155 27 C -0.119 4.119 28 C -0.123 4.123 29 H 0.256 0.744 30 H 0.371 0.629 31 H 0.070 0.930 32 H 0.016 0.984 33 H 0.407 0.593 34 H 0.147 0.853 35 H 0.175 0.825 36 H 0.179 0.821 37 H 0.147 0.853 38 H 0.196 0.804 39 H 0.173 0.827 40 H 0.199 0.801 41 H 0.089 0.911 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.079 -5.235 13.389 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.257 4.257 3 Si 0.786 3.214 4 H -0.206 1.206 5 H -0.231 1.231 6 H -0.161 1.161 7 C -0.348 4.348 8 H 0.061 0.939 9 N -0.365 5.365 10 C 0.070 3.930 11 C 0.012 3.988 12 N -0.345 5.345 13 C 0.326 3.674 14 O -0.444 6.444 15 C -0.147 4.147 16 C -0.101 4.101 17 C -0.119 4.119 18 C -0.090 4.090 19 C -0.132 4.132 20 C 0.068 3.932 21 N -0.108 5.108 22 C -0.078 4.078 23 C -0.300 4.300 24 C -0.153 4.153 25 N -0.146 5.146 26 C -0.195 4.195 27 C -0.157 4.157 28 C -0.160 4.160 29 H 0.064 0.936 30 H 0.206 0.794 31 H 0.089 0.911 32 H 0.035 0.965 33 H 0.243 0.757 34 H 0.165 0.835 35 H 0.193 0.807 36 H 0.196 0.804 37 H 0.164 0.836 38 H 0.212 0.788 39 H 0.190 0.810 40 H 0.215 0.785 41 H 0.107 0.893 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 21.014 -4.864 13.355 25.369 hybrid contribution -0.601 0.303 -0.509 0.844 sum 20.413 -4.561 12.846 24.546 Atomic orbital electron populations 1.69924 1.07598 1.26578 1.59825 1.25551 0.96010 1.01507 1.02654 0.85364 0.78928 0.79078 0.78053 1.20639 1.23064 1.16135 1.18728 0.82514 0.92768 1.40801 0.93899 1.42274 1.02004 1.03023 1.89151 1.21085 0.93611 0.86372 0.91917 1.21536 0.96947 0.96513 0.83844 1.45581 1.62057 1.19713 1.07155 1.18626 0.78944 0.85491 0.84376 1.90791 1.46250 1.20720 1.86667 1.20287 1.04362 0.97704 0.92322 1.21598 0.95316 0.91953 1.01279 1.21720 0.97834 1.01431 0.90896 1.21739 0.94868 0.92129 1.00253 1.21504 0.98624 0.97086 0.96002 1.17609 0.97359 0.84665 0.93587 1.45504 1.03759 1.04038 1.57466 1.23103 1.00452 0.83929 1.00352 1.21751 0.90966 1.01112 1.16134 1.24315 1.00834 0.90772 0.99405 1.77385 0.93408 1.19144 1.24618 1.23404 0.98944 0.99692 0.97497 1.22639 0.96593 1.00132 0.96300 1.23139 0.92863 1.03466 0.96563 0.93560 0.79368 0.91137 0.96513 0.75664 0.83516 0.80717 0.80401 0.83570 0.78754 0.80960 0.78474 0.89251 0.93885 0.91164 0.89293 0.90050 0.87651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.47 13.97 21.65 0.30 -64.16 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 3 Si 0.96 43.80 27.77 68.60 1.91 45.71 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 6 H -0.24 -9.08 6.47 99.48 0.64 -8.44 16 7 C -0.22 -12.12 9.75 84.03 0.82 -11.31 16 8 H 0.04 2.77 7.54 -2.91 -0.02 2.75 16 9 N -0.72 -30.87 5.01 -300.95 -1.51 -32.38 16 10 C 0.16 5.62 0.78 4.14 0.00 5.62 16 11 C 0.14 5.24 4.98 86.38 0.43 5.67 16 12 N -0.69 -23.76 5.37 -466.21 -2.50 -26.26 16 13 C 0.54 19.90 7.76 86.72 0.67 20.57 16 14 O -0.56 -25.01 14.15 -3.99 -0.06 -25.07 16 15 C -0.14 -4.17 5.89 -19.99 -0.12 -4.28 16 16 C -0.08 -1.69 9.53 22.52 0.21 -1.47 16 17 C -0.10 -1.34 10.02 22.24 0.22 -1.12 16 18 C -0.07 -0.89 10.03 22.30 0.22 -0.67 16 19 C -0.11 -2.17 9.96 22.36 0.22 -1.94 16 20 C 0.16 4.49 6.05 38.49 0.23 4.72 16 21 N -0.33 -10.62 2.00 -186.72 -0.37 -11.00 16 22 C 0.06 1.74 10.96 83.39 0.91 2.65 16 23 C -0.27 -7.09 10.80 22.01 0.24 -6.85 16 24 C 0.03 1.04 12.02 85.26 1.02 2.06 16 25 N -0.33 -12.29 11.93 -56.96 -0.68 -12.97 16 26 C -0.16 -5.13 7.33 31.18 0.23 -4.90 16 27 C -0.12 -3.08 8.00 31.18 0.25 -2.83 16 28 C -0.12 -3.00 7.19 31.13 0.22 -2.77 16 29 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 30 H 0.37 14.71 5.67 -92.70 -0.53 14.18 16 31 H 0.07 2.50 8.05 -2.38 -0.02 2.49 16 32 H 0.02 0.81 7.35 -2.39 -0.02 0.79 16 33 H 0.41 11.93 6.48 -92.71 -0.60 11.33 16 34 H 0.15 2.56 6.42 -2.91 -0.02 2.54 16 35 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 37 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.20 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.20 4.87 8.06 -2.91 -0.02 4.85 16 41 H 0.09 2.60 8.04 -2.38 -0.02 2.58 16 42 H 0.04 1.72 8.04 -2.38 -0.02 1.70 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 46 H 0.11 2.16 8.10 -2.39 -0.02 2.14 16 Total: -1.00 -86.56 384.14 3.18 -83.38 By element: Atomic # 1 Polarization: 43.17 SS G_CDS: -0.17 Total: 43.00 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 6.27 Total: -0.25 kcal Atomic # 7 Polarization: -142.01 SS G_CDS: -4.76 Total: -146.77 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.06 Total: -25.07 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.91 Total: 45.71 kcal Total: -86.56 3.18 -83.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280507521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.987 kcal (2) G-P(sol) polarization free energy of solvation -86.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds