Wall clock time and date at job start Sat Apr 11 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00206 * 2 1 4 4 H 1.48498 * 109.47142 * 240.00264 * 3 2 1 5 5 H 1.48502 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47050 * 119.99701 * 3 2 1 7 7 C 1.38813 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99314 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00539 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00372 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47375 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.91343 * 308.90038 * 11 10 9 13 13 C 1.55157 * 111.00585 * 184.99935 * 11 10 9 14 14 C 1.54321 * 103.10033 * 206.50978 * 13 11 10 15 15 N 1.47018 * 107.27524 * 22.10414 * 14 13 11 16 16 C 1.34774 * 125.65048 * 181.02410 * 15 14 13 17 17 O 1.21629 * 119.99938 * 180.02562 * 16 15 14 18 18 C 1.47306 * 120.00111 * 0.02562 * 16 15 14 19 19 C 1.36447 * 126.19326 * 180.02562 * 18 16 15 20 20 N 1.36132 * 106.76978 * 179.97438 * 19 18 16 21 21 C 1.40204 * 126.22220 * 179.97438 * 20 19 18 22 22 C 1.38820 * 120.06349 * 359.72461 * 21 20 19 23 23 C 1.38134 * 119.93195 * 179.70355 * 22 21 20 24 24 C 1.38272 * 120.06625 * 0.58863 * 23 22 21 25 25 C 1.38281 * 120.13077 * 359.68958 * 24 23 22 26 26 C 1.38126 * 120.06667 * 0.02562 * 25 24 23 27 27 C 1.36119 * 107.55908 * 359.97438 * 20 19 18 28 28 N 1.30155 * 109.00853 * 359.72993 * 27 20 19 29 29 C 1.47434 * 108.70129 * 1.05955 * 15 14 13 30 30 H 0.96999 * 119.99725 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99526 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.46923 * 59.99400 * 10 9 7 33 33 H 1.09000 * 109.46828 * 299.99857 * 10 9 7 34 34 H 1.09002 * 110.72219 * 88.05675 * 13 11 10 35 35 H 1.09003 * 110.71618 * 324.96287 * 13 11 10 36 36 H 1.09008 * 109.88104 * 141.52028 * 14 13 11 37 37 H 1.09002 * 109.88425 * 262.68213 * 14 13 11 38 38 H 1.08002 * 126.61397 * 359.96500 * 19 18 16 39 39 H 1.07996 * 120.04057 * 359.97438 * 22 21 20 40 40 H 1.07997 * 119.96591 * 180.30106 * 23 22 21 41 41 H 1.07999 * 119.93985 * 179.70463 * 24 23 22 42 42 H 1.07994 * 119.96954 * 179.97438 * 25 24 23 43 43 H 1.07990 * 120.03748 * 180.02562 * 26 25 24 44 44 H 1.07997 * 125.49463 * 179.97438 * 27 20 19 45 45 H 1.09000 * 110.36877 * 94.71035 * 29 15 14 46 46 H 1.09001 * 110.36202 * 216.92811 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0016 11 6 1.0637 -4.8197 -0.0035 12 1 0.3239 -4.7005 0.7881 13 6 1.7988 -6.1802 0.1226 14 6 0.8288 -7.1667 -0.5611 15 7 -0.0298 -6.3821 -1.4604 16 6 -1.0233 -6.8751 -2.2261 17 8 -1.6713 -6.1295 -2.9356 18 6 -1.3244 -8.3169 -2.2036 19 6 -2.2962 -8.9484 -2.9238 20 7 -2.2264 -10.2696 -2.6036 21 6 -3.0430 -11.2896 -3.1120 22 6 -4.0408 -10.9894 -4.0293 23 6 -4.8398 -11.9973 -4.5331 24 6 -4.6546 -13.3023 -4.1154 25 6 -3.6653 -13.6036 -3.1973 26 6 -2.8594 -12.6009 -2.6945 27 6 -1.2196 -10.4206 -1.7000 28 7 -0.6804 -9.2589 -1.4681 29 6 0.3767 -4.9668 -1.3865 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0016 32 1 2.6839 -3.7150 0.8887 33 1 2.6852 -3.7142 -0.8912 34 1 1.9433 -6.4449 1.1701 35 1 2.7539 -6.1525 -0.4019 36 1 1.3920 -7.9028 -1.1349 37 1 0.2186 -7.6676 0.1906 38 1 -2.9874 -8.4886 -3.6146 39 1 -4.1894 -9.9696 -4.3521 40 1 -5.6130 -11.7651 -5.2504 41 1 -5.2836 -14.0881 -4.5070 42 1 -3.5232 -14.6237 -2.8726 43 1 -2.0867 -12.8367 -1.9779 44 1 -0.9146 -11.3543 -1.2512 45 1 1.0818 -4.7325 -2.1840 46 1 -0.4965 -4.3176 -1.4502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317324049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:55 Heat of formation + Delta-G solvation = 78.062441 kcal Electronic energy + Delta-G solvation = -27776.551445 eV Core-core repulsion = 23860.742804 eV Total energy + Delta-G solvation = -3915.808641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.80435 -39.86503 -39.32397 -37.35678 -34.75294 -34.43714 -32.12441 -31.89989 -30.36627 -30.24830 -29.70913 -28.47461 -25.82979 -24.18471 -24.00226 -23.23778 -21.99653 -21.52252 -21.27664 -19.93407 -19.58685 -18.56355 -17.15856 -16.84324 -16.39221 -16.17594 -16.01170 -15.59548 -15.38102 -14.89051 -14.59282 -14.56473 -14.22816 -14.08198 -13.88240 -13.53300 -13.35946 -13.26146 -13.05128 -12.54654 -12.41291 -12.33587 -12.02917 -11.77252 -11.59762 -11.19631 -11.10778 -10.78026 -10.67807 -10.47540 -10.42523 -10.27801 -9.98457 -9.89673 -9.70720 -9.60138 -9.23614 -8.81255 -8.80338 -8.32194 -6.85156 -5.68772 -2.97815 0.24988 0.64419 1.56099 2.07536 2.18580 3.14205 3.19524 3.49677 3.51879 3.53551 3.55022 3.97484 4.06399 4.13711 4.31357 4.48539 4.59268 4.63379 4.68660 4.72642 4.91447 5.02046 5.04357 5.13428 5.20874 5.26144 5.33316 5.56467 5.66793 5.67806 5.70125 5.80407 5.82993 5.96507 6.03693 6.05563 6.12866 6.15255 6.21046 6.25503 6.41138 6.48993 6.57895 6.73650 6.79778 6.93339 7.39127 7.74649 7.76141 8.34139 8.49657 9.60601 10.18618 10.53141 11.53937 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030015 B = 0.001804 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.638808 B =15520.080765 C =16293.891069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.084 0.916 13 C -0.129 4.129 14 C 0.118 3.882 15 N -0.603 5.603 16 C 0.610 3.390 17 O -0.543 6.543 18 C -0.039 4.039 19 C 0.030 3.970 20 N -0.410 5.410 21 C 0.132 3.868 22 C -0.131 4.131 23 C -0.091 4.091 24 C -0.126 4.126 25 C -0.093 4.093 26 C -0.131 4.131 27 C 0.191 3.809 28 N -0.449 5.449 29 C 0.116 3.884 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.024 0.976 33 H 0.022 0.978 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.192 0.808 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.214 0.786 45 H 0.071 0.929 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.645 -33.964 -6.335 35.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.037 3.963 11 C -0.124 4.124 12 H 0.103 0.897 13 C -0.167 4.167 14 C -0.005 4.005 15 N -0.335 5.335 16 C 0.398 3.602 17 O -0.420 6.420 18 C -0.167 4.167 19 C -0.104 4.104 20 N -0.089 5.089 21 C 0.040 3.960 22 C -0.151 4.151 23 C -0.110 4.110 24 C -0.144 4.144 25 C -0.111 4.111 26 C -0.151 4.151 27 C -0.092 4.092 28 N -0.166 5.166 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.209 0.791 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.230 0.770 45 H 0.089 0.911 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.262 -33.297 -6.235 34.646 hybrid contribution -0.468 0.664 -0.464 0.936 sum -7.730 -32.634 -6.699 34.199 Atomic orbital electron populations 1.69660 1.05092 1.25726 1.57612 1.24751 0.95513 0.97681 1.03050 0.86260 0.78485 0.83597 0.77786 1.21302 1.21739 1.21318 1.19179 0.90991 0.84189 1.42824 0.91222 1.42373 1.05912 0.99940 1.89502 1.20585 0.92759 0.84788 0.98143 1.22609 0.98446 0.94832 0.96538 0.89728 1.22719 0.98421 0.94474 1.01137 1.22010 0.92173 0.93604 0.92744 1.48292 1.32730 1.10010 1.42434 1.16437 0.79415 0.84663 0.79697 1.90831 1.50690 1.58700 1.41826 1.20618 0.99345 0.94342 1.02346 1.22716 1.02492 0.82066 1.03147 1.43091 1.26400 1.06375 1.32991 1.17882 0.93219 0.87422 0.97482 1.21004 0.95462 1.01038 0.97587 1.21101 0.98559 0.92345 0.98973 1.21309 0.98449 0.96866 0.97820 1.21067 0.94604 0.99154 0.96294 1.20865 1.01767 0.90428 1.02048 1.25334 0.89460 0.99526 0.94832 1.70780 1.25611 0.98201 1.22051 1.22401 1.00117 0.80450 0.97587 0.93479 0.78201 0.95794 0.96028 0.90159 0.90586 0.91162 0.91015 0.79135 0.84795 0.84774 0.85192 0.84790 0.84862 0.76960 0.91071 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.04 13.06 55.49 0.72 -28.32 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -19.05 5.55 -59.92 -0.33 -19.38 16 10 C 0.17 3.36 5.72 -4.05 -0.02 3.34 16 11 C -0.10 -1.77 3.06 -88.36 -0.27 -2.04 16 12 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 13 C -0.13 -1.70 6.41 -24.90 -0.16 -1.86 16 14 C 0.12 1.58 5.52 -3.07 -0.02 1.57 16 15 N -0.60 -9.94 3.33 -171.69 -0.57 -10.51 16 16 C 0.61 10.56 7.84 -12.57 -0.10 10.46 16 17 O -0.54 -11.01 17.13 5.25 0.09 -10.92 16 18 C -0.04 -0.55 6.82 -83.09 -0.57 -1.12 16 19 C 0.03 0.35 10.57 -16.29 -0.17 0.17 16 20 N -0.41 -3.72 2.97 -61.91 -0.18 -3.90 16 21 C 0.13 0.95 6.63 -83.59 -0.55 0.40 16 22 C -0.13 -0.84 9.46 -39.40 -0.37 -1.21 16 23 C -0.09 -0.43 10.04 -39.61 -0.40 -0.83 16 24 C -0.13 -0.51 10.04 -39.55 -0.40 -0.90 16 25 C -0.09 -0.37 10.04 -39.61 -0.40 -0.77 16 26 C -0.13 -0.67 9.46 -39.40 -0.37 -1.05 16 27 C 0.19 1.69 11.88 -89.67 -1.07 0.62 16 28 N -0.45 -5.45 8.75 -10.97 -0.10 -5.55 16 29 C 0.12 2.10 6.34 -2.41 -0.02 2.08 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.38 10.58 7.67 -40.82 -0.31 10.27 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.45 7.97 -51.93 -0.41 0.03 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.94 8.04 -51.93 -0.42 0.53 16 36 H 0.07 0.90 7.73 -51.92 -0.40 0.50 16 37 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 38 H 0.19 1.85 7.11 -52.49 -0.37 1.48 16 39 H 0.13 0.77 6.78 -52.49 -0.36 0.42 16 40 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 41 H 0.13 0.25 8.06 -52.49 -0.42 -0.17 16 42 H 0.13 0.23 8.06 -52.49 -0.42 -0.19 16 43 H 0.13 0.41 6.74 -52.49 -0.35 0.06 16 44 H 0.21 0.95 7.03 -52.49 -0.37 0.58 16 45 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 46 H 0.08 1.71 8.03 -51.93 -0.42 1.30 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -36.23 384.38 -11.03 -47.26 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.30 Total: 6.30 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -5.13 Total: 1.30 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: -0.46 Total: -67.66 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.23 -11.03 -47.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317324049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.324 kcal (2) G-P(sol) polarization free energy of solvation -36.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds