Wall clock time and date at job start Sat Apr 11 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00206 * 2 1 4 4 H 1.48498 * 109.47142 * 240.00264 * 3 2 1 5 5 H 1.48502 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47050 * 119.99701 * 3 2 1 7 7 C 1.38813 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99314 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00539 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00372 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47375 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.91343 * 308.90038 * 11 10 9 13 13 C 1.55157 * 111.00585 * 184.99935 * 11 10 9 14 14 C 1.54321 * 103.10033 * 206.50978 * 13 11 10 15 15 N 1.47018 * 107.27524 * 22.10414 * 14 13 11 16 16 C 1.34774 * 125.65048 * 181.02410 * 15 14 13 17 17 O 1.21629 * 119.99938 * 180.02562 * 16 15 14 18 18 C 1.47306 * 120.00111 * 0.02562 * 16 15 14 19 19 C 1.36447 * 126.19326 * 180.02562 * 18 16 15 20 20 N 1.36132 * 106.76978 * 179.97438 * 19 18 16 21 21 C 1.40204 * 126.22220 * 179.97438 * 20 19 18 22 22 C 1.38820 * 120.06349 * 359.72461 * 21 20 19 23 23 C 1.38134 * 119.93195 * 179.70355 * 22 21 20 24 24 C 1.38272 * 120.06625 * 0.58863 * 23 22 21 25 25 C 1.38281 * 120.13077 * 359.68958 * 24 23 22 26 26 C 1.38126 * 120.06667 * 0.02562 * 25 24 23 27 27 C 1.36119 * 107.55908 * 359.97438 * 20 19 18 28 28 N 1.30155 * 109.00853 * 359.72993 * 27 20 19 29 29 C 1.47434 * 108.70129 * 1.05955 * 15 14 13 30 30 H 0.96999 * 119.99725 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99526 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.46923 * 59.99400 * 10 9 7 33 33 H 1.09000 * 109.46828 * 299.99857 * 10 9 7 34 34 H 1.09002 * 110.72219 * 88.05675 * 13 11 10 35 35 H 1.09003 * 110.71618 * 324.96287 * 13 11 10 36 36 H 1.09008 * 109.88104 * 141.52028 * 14 13 11 37 37 H 1.09002 * 109.88425 * 262.68213 * 14 13 11 38 38 H 1.08002 * 126.61397 * 359.96500 * 19 18 16 39 39 H 1.07996 * 120.04057 * 359.97438 * 22 21 20 40 40 H 1.07997 * 119.96591 * 180.30106 * 23 22 21 41 41 H 1.07999 * 119.93985 * 179.70463 * 24 23 22 42 42 H 1.07994 * 119.96954 * 179.97438 * 25 24 23 43 43 H 1.07990 * 120.03748 * 180.02562 * 26 25 24 44 44 H 1.07997 * 125.49463 * 179.97438 * 27 20 19 45 45 H 1.09000 * 110.36877 * 94.71035 * 29 15 14 46 46 H 1.09001 * 110.36202 * 216.92811 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0016 11 6 1.0637 -4.8197 -0.0035 12 1 0.3239 -4.7005 0.7881 13 6 1.7988 -6.1802 0.1226 14 6 0.8288 -7.1667 -0.5611 15 7 -0.0298 -6.3821 -1.4604 16 6 -1.0233 -6.8751 -2.2261 17 8 -1.6713 -6.1295 -2.9356 18 6 -1.3244 -8.3169 -2.2036 19 6 -2.2962 -8.9484 -2.9238 20 7 -2.2264 -10.2696 -2.6036 21 6 -3.0430 -11.2896 -3.1120 22 6 -4.0408 -10.9894 -4.0293 23 6 -4.8398 -11.9973 -4.5331 24 6 -4.6546 -13.3023 -4.1154 25 6 -3.6653 -13.6036 -3.1973 26 6 -2.8594 -12.6009 -2.6945 27 6 -1.2196 -10.4206 -1.7000 28 7 -0.6804 -9.2589 -1.4681 29 6 0.3767 -4.9668 -1.3865 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0016 32 1 2.6839 -3.7150 0.8887 33 1 2.6852 -3.7142 -0.8912 34 1 1.9433 -6.4449 1.1701 35 1 2.7539 -6.1525 -0.4019 36 1 1.3920 -7.9028 -1.1349 37 1 0.2186 -7.6676 0.1906 38 1 -2.9874 -8.4886 -3.6146 39 1 -4.1894 -9.9696 -4.3521 40 1 -5.6130 -11.7651 -5.2504 41 1 -5.2836 -14.0881 -4.5070 42 1 -3.5232 -14.6237 -2.8726 43 1 -2.0867 -12.8367 -1.9779 44 1 -0.9146 -11.3543 -1.2512 45 1 1.0818 -4.7325 -2.1840 46 1 -0.4965 -4.3176 -1.4502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317324049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:54 Heat of formation + Delta-G solvation = 56.683587 kcal Electronic energy + Delta-G solvation = -27777.478502 eV Core-core repulsion = 23860.742804 eV Total energy + Delta-G solvation = -3916.735698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.57000 -40.96797 -39.94866 -38.75679 -36.43738 -35.29660 -33.87636 -32.31221 -32.04007 -30.94024 -30.47200 -29.85665 -27.38578 -25.61764 -24.52404 -24.34672 -23.41176 -22.41680 -21.92766 -21.36071 -20.45115 -19.52158 -18.99979 -17.86748 -17.48414 -17.06707 -16.90096 -16.63802 -16.35599 -15.92096 -15.79863 -15.50577 -15.27866 -15.12528 -15.08987 -14.68302 -14.60253 -14.31035 -14.10594 -13.85212 -13.74997 -13.50223 -13.10386 -12.96304 -12.70313 -12.65514 -12.29279 -12.12016 -12.09279 -11.88070 -11.80403 -11.67623 -11.56960 -11.41969 -11.17189 -10.91438 -10.08358 -10.03770 -9.66711 -9.34955 -8.99051 -7.93222 -5.22848 -0.28835 0.30700 0.68014 1.38054 1.42933 1.47387 1.51599 1.57527 1.99019 2.35678 2.57390 2.76577 3.15744 3.39276 3.46735 3.60759 3.62766 3.70416 3.87712 3.88918 3.99661 4.10231 4.20828 4.23323 4.36400 4.37222 4.40710 4.48414 4.61815 4.64585 4.72457 4.74999 4.86191 4.95388 4.97053 4.99044 5.09305 5.12276 5.22244 5.32282 5.36518 5.40110 5.44231 5.50443 5.51281 5.77026 6.10134 6.28027 6.44384 6.60678 7.04881 7.33918 8.10151 8.32536 9.30389 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030015 B = 0.001804 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.638808 B =15520.080765 C =16293.891069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.978 3.022 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.748 5.748 10 C 0.165 3.835 11 C -0.095 4.095 12 H 0.075 0.925 13 C -0.114 4.114 14 C 0.124 3.876 15 N -0.606 5.606 16 C 0.602 3.398 17 O -0.590 6.590 18 C -0.072 4.072 19 C 0.036 3.964 20 N -0.403 5.403 21 C 0.101 3.899 22 C -0.148 4.148 23 C -0.100 4.100 24 C -0.123 4.123 25 C -0.094 4.094 26 C -0.130 4.130 27 C 0.206 3.794 28 N -0.471 5.471 29 C 0.120 3.880 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.037 0.963 33 H 0.026 0.974 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.196 0.804 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.157 0.843 44 H 0.259 0.741 45 H 0.062 0.938 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.492 -37.680 -5.717 38.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.806 3.194 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.391 5.391 10 C 0.039 3.961 11 C -0.114 4.114 12 H 0.093 0.907 13 C -0.152 4.152 14 C 0.002 3.998 15 N -0.337 5.337 16 C 0.392 3.608 17 O -0.471 6.471 18 C -0.198 4.198 19 C -0.102 4.102 20 N -0.079 5.079 21 C 0.010 3.990 22 C -0.168 4.168 23 C -0.119 4.119 24 C -0.141 4.141 25 C -0.113 4.113 26 C -0.149 4.149 27 C -0.076 4.076 28 N -0.189 5.189 29 C -0.003 4.003 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.213 0.787 39 H 0.146 0.854 40 H 0.167 0.833 41 H 0.172 0.828 42 H 0.180 0.820 43 H 0.174 0.826 44 H 0.275 0.725 45 H 0.081 0.919 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.060 -37.091 -5.602 37.998 hybrid contribution -0.903 1.590 -0.722 1.966 sum -6.963 -35.500 -6.324 36.725 Atomic orbital electron populations 1.69845 1.06810 1.26104 1.59572 1.25645 0.96392 1.01385 1.03754 0.85152 0.77101 0.78856 0.78287 1.20407 1.22369 1.19997 1.19656 0.91664 0.85297 1.41154 0.90198 1.42629 1.05588 1.01390 1.89468 1.20748 0.93223 0.83623 0.98531 1.22423 0.97868 0.95941 0.95202 0.90687 1.22729 0.98227 0.91197 1.03064 1.22122 0.91845 0.93443 0.92400 1.48393 1.33050 1.09441 1.42771 1.17013 0.78833 0.86102 0.78902 1.90781 1.52286 1.60264 1.43770 1.20181 1.01597 0.92976 1.05059 1.22768 1.01681 0.83252 1.02478 1.43163 1.26436 1.05807 1.32528 1.18164 0.94030 0.87779 0.99030 1.21164 0.96066 1.01459 0.98071 1.21361 0.98691 0.92537 0.99280 1.21700 0.98331 0.96985 0.97093 1.21461 0.93898 1.00206 0.95703 1.21201 1.02231 0.89470 1.01983 1.26194 0.88053 0.99973 0.93415 1.70681 1.26605 0.98834 1.22784 1.22177 0.98466 0.81362 0.98285 0.94110 0.79717 0.94463 0.95636 0.87447 0.89200 0.89927 0.90357 0.78750 0.85385 0.83301 0.82834 0.82035 0.82587 0.72528 0.91931 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.43 13.06 21.65 0.28 -62.15 16 2 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 3 Si 0.98 47.70 29.55 68.60 2.03 49.73 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 6 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.25 -14.21 9.99 84.03 0.84 -13.38 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 9 N -0.75 -39.76 5.55 -343.48 -1.91 -41.67 16 10 C 0.17 6.69 5.72 86.38 0.49 7.18 16 11 C -0.09 -3.22 3.06 -9.33 -0.03 -3.25 16 12 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 13 C -0.11 -2.76 6.41 31.78 0.20 -2.55 16 14 C 0.12 3.19 5.52 86.73 0.48 3.67 16 15 N -0.61 -20.69 3.33 -815.34 -2.71 -23.40 16 16 C 0.60 22.05 7.84 86.63 0.68 22.73 16 17 O -0.59 -25.92 17.13 -4.12 -0.07 -26.00 16 18 C -0.07 -2.06 6.82 40.50 0.28 -1.78 16 19 C 0.04 0.83 10.57 83.61 0.88 1.71 16 20 N -0.40 -6.84 2.97 -349.77 -1.04 -7.88 16 21 C 0.10 1.30 6.63 38.08 0.25 1.55 16 22 C -0.15 -1.81 9.46 22.38 0.21 -1.60 16 23 C -0.10 -0.80 10.04 22.25 0.22 -0.58 16 24 C -0.12 -0.62 10.04 22.29 0.22 -0.40 16 25 C -0.09 -0.42 10.04 22.25 0.22 -0.20 16 26 C -0.13 -0.93 9.46 22.39 0.21 -0.72 16 27 C 0.21 3.17 11.88 180.02 2.14 5.31 16 28 N -0.47 -10.92 8.75 -188.62 -1.65 -12.57 16 29 C 0.12 4.57 6.34 86.93 0.55 5.13 16 30 H 0.25 15.60 8.31 -92.71 -0.77 14.82 16 31 H 0.37 21.39 7.67 -92.70 -0.71 20.67 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.03 1.03 7.97 -2.39 -0.02 1.01 16 34 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.09 1.98 8.04 -2.39 -0.02 1.96 16 36 H 0.08 1.97 7.73 -2.38 -0.02 1.95 16 37 H 0.08 1.95 7.63 -2.39 -0.02 1.93 16 38 H 0.20 4.13 7.11 -2.91 -0.02 4.11 16 39 H 0.13 1.58 6.78 -2.91 -0.02 1.56 16 40 H 0.15 0.62 8.06 -2.91 -0.02 0.60 16 41 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 42 H 0.16 -0.19 8.06 -2.91 -0.02 -0.21 16 43 H 0.16 0.28 6.74 -2.92 -0.02 0.26 16 44 H 0.26 1.19 7.03 -2.91 -0.02 1.16 16 45 H 0.06 2.45 7.91 -2.39 -0.02 2.43 16 46 H 0.05 2.08 8.03 -2.39 -0.02 2.07 16 Total: -1.00 -82.40 384.38 3.56 -78.84 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.29 Total: 26.56 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 8.33 Total: 18.53 kcal Atomic # 7 Polarization: -140.64 SS G_CDS: -7.03 Total: -147.66 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.07 Total: -26.00 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -82.40 3.56 -78.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317324049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.525 kcal (2) G-P(sol) polarization free energy of solvation -82.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds