Wall clock time and date at job start Sat Apr 11 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99842 * 2 1 4 4 H 1.48500 * 109.47134 * 239.99854 * 3 2 1 5 5 H 1.48501 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46964 * 120.00004 * 3 2 1 7 7 C 1.38815 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99869 * 179.97438 * 7 2 1 9 9 N 1.36926 * 120.00032 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00241 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47635 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.91356 * 51.09852 * 11 10 9 13 13 C 1.55153 * 111.00660 * 175.00304 * 11 10 9 14 14 C 1.54321 * 102.94354 * 153.57584 * 13 11 10 15 15 N 1.47019 * 107.27150 * 337.80958 * 14 13 11 16 16 C 1.34783 * 125.64913 * 178.90623 * 15 14 13 17 17 O 1.21622 * 119.99691 * 180.02562 * 16 15 14 18 18 C 1.47309 * 120.00107 * 0.02562 * 16 15 14 19 19 C 1.36442 * 126.19081 * 180.02562 * 18 16 15 20 20 N 1.36138 * 106.76153 * 180.02562 * 19 18 16 21 21 C 1.40215 * 126.21613 * 179.97438 * 20 19 18 22 22 C 1.38827 * 120.06435 * 359.72747 * 21 20 19 23 23 C 1.38125 * 119.93177 * 179.72094 * 22 21 20 24 24 C 1.38273 * 120.06904 * 0.57251 * 23 22 21 25 25 C 1.38280 * 120.12533 * 359.68241 * 24 23 22 26 26 C 1.38119 * 120.06846 * 0.03669 * 25 24 23 27 27 C 1.36108 * 107.56811 * 0.24056 * 20 19 18 28 28 N 1.30157 * 109.00181 * 359.59297 * 27 20 19 29 29 C 1.47422 * 108.70453 * 359.16575 * 15 14 13 30 30 H 0.97001 * 120.00600 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00395 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47074 * 60.00399 * 10 9 7 33 33 H 1.09002 * 109.47096 * 300.00822 * 10 9 7 34 34 H 1.09000 * 110.72284 * 35.21469 * 13 11 10 35 35 H 1.09002 * 110.87292 * 272.01116 * 13 11 10 36 36 H 1.08998 * 109.88599 * 218.38853 * 14 13 11 37 37 H 1.09007 * 110.01123 * 97.29401 * 14 13 11 38 38 H 1.08001 * 126.61592 * 0.02562 * 19 18 16 39 39 H 1.07999 * 120.03026 * 359.96511 * 22 21 20 40 40 H 1.07999 * 119.96485 * 180.25140 * 23 22 21 41 41 H 1.07991 * 119.94024 * 179.69957 * 24 23 22 42 42 H 1.08001 * 119.96294 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.03368 * 180.02562 * 26 25 24 44 44 H 1.07994 * 125.49769 * 179.76496 * 27 20 19 45 45 H 1.08996 * 110.36898 * 142.74592 * 29 15 14 46 46 H 1.09009 * 110.36933 * 265.06885 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.3247 -4.6994 -0.7941 13 6 1.7991 -6.1800 -0.1294 14 6 0.8249 -7.1646 0.5510 15 7 -0.0326 -6.3788 1.4503 16 6 -1.0298 -6.8697 2.2126 17 8 -1.6770 -6.1232 2.9218 18 6 -1.3357 -8.3105 2.1869 19 6 -2.3121 -8.9397 2.9027 20 7 -2.2456 -10.2607 2.5805 21 6 -3.0669 -11.2789 3.0853 22 6 -4.0587 -10.9787 4.0091 23 6 -4.8700 -11.9829 4.5003 24 6 -4.6874 -13.2880 4.0816 25 6 -3.6969 -13.5909 3.1655 26 6 -2.8863 -12.5901 2.6665 27 6 -1.2332 -10.4145 1.6839 28 7 -0.6968 -9.2525 1.4470 29 6 0.3749 -4.9640 1.3754 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6853 -3.7149 0.8878 33 1 2.6841 -3.7141 -0.8921 34 1 2.7524 -6.1540 0.3985 35 1 1.9468 -6.4451 -1.1763 36 1 1.3848 -7.9034 1.1243 37 1 0.2140 -7.6643 -0.2008 38 1 -3.0041 -8.4787 3.5919 39 1 -4.1983 -9.9603 4.3405 40 1 -5.6443 -11.7493 5.2159 41 1 -5.3197 -14.0723 4.4706 42 1 -3.5569 -14.6111 2.8400 43 1 -2.1132 -12.8272 1.9506 44 1 -0.9265 -11.3493 1.2386 45 1 -0.4983 -4.3142 1.4334 46 1 1.0776 -4.7287 2.1749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317324054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:58 Heat of formation + Delta-G solvation = 78.086794 kcal Electronic energy + Delta-G solvation = -27781.094439 eV Core-core repulsion = 23865.286854 eV Total energy + Delta-G solvation = -3915.807585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.80429 -39.86941 -39.33089 -37.36889 -34.75295 -34.43697 -32.12661 -31.90002 -30.36696 -30.24786 -29.70978 -28.48760 -25.82730 -24.18407 -24.00167 -23.23680 -21.99637 -21.52620 -21.27661 -19.93227 -19.58556 -18.56575 -17.16004 -16.84337 -16.39777 -16.17613 -16.00248 -15.60356 -15.38060 -14.88496 -14.59405 -14.56471 -14.22928 -14.08164 -13.88161 -13.53233 -13.36065 -13.26286 -13.05102 -12.54480 -12.41578 -12.33640 -12.02772 -11.77181 -11.60045 -11.19314 -11.10857 -10.78141 -10.67751 -10.48494 -10.42367 -10.27490 -9.98481 -9.89513 -9.70733 -9.60138 -9.23560 -8.81256 -8.80392 -8.32071 -6.85235 -5.68738 -2.97784 0.25037 0.64484 1.56161 2.07568 2.18653 3.14253 3.19624 3.49680 3.51993 3.53567 3.55034 3.97503 4.06466 4.13738 4.31392 4.48561 4.59355 4.63463 4.68706 4.72807 4.91208 5.02587 5.04380 5.13641 5.20815 5.26271 5.33391 5.56585 5.66882 5.67857 5.70357 5.80491 5.83068 5.96637 6.03674 6.05601 6.12819 6.15354 6.21123 6.25510 6.41272 6.49127 6.58032 6.73730 6.79902 6.93317 7.39193 7.74733 7.76159 8.34244 8.49592 9.60597 10.18611 10.53182 11.53967 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029941 B = 0.001806 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.963654 B =15504.036351 C =16279.751925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.084 0.916 13 C -0.129 4.129 14 C 0.117 3.883 15 N -0.603 5.603 16 C 0.610 3.390 17 O -0.543 6.543 18 C -0.039 4.039 19 C 0.030 3.970 20 N -0.410 5.410 21 C 0.132 3.868 22 C -0.131 4.131 23 C -0.091 4.091 24 C -0.126 4.126 25 C -0.093 4.093 26 C -0.131 4.131 27 C 0.191 3.809 28 N -0.449 5.449 29 C 0.116 3.884 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.022 0.978 33 H 0.024 0.976 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.192 0.808 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.214 0.786 45 H 0.083 0.917 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 -33.941 6.285 35.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.167 4.167 14 C -0.006 4.006 15 N -0.335 5.335 16 C 0.398 3.602 17 O -0.420 6.420 18 C -0.166 4.166 19 C -0.104 4.104 20 N -0.089 5.089 21 C 0.040 3.960 22 C -0.151 4.151 23 C -0.110 4.110 24 C -0.144 4.144 25 C -0.111 4.111 26 C -0.151 4.151 27 C -0.091 4.091 28 N -0.167 5.167 29 C -0.005 4.005 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.209 0.791 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.230 0.770 45 H 0.102 0.898 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.312 -33.274 6.178 34.623 hybrid contribution -0.473 0.665 0.460 0.937 sum -7.785 -32.608 6.638 34.175 Atomic orbital electron populations 1.69652 1.05097 1.25736 1.57603 1.24747 0.95508 0.97679 1.03048 0.86262 0.78487 0.83603 0.77787 1.21318 1.21739 1.21301 1.19177 0.90993 0.84187 1.42836 0.91219 1.42370 1.05910 0.99942 1.89503 1.20589 0.92759 0.84785 0.98145 1.22539 0.98452 0.94865 0.96616 0.89746 1.22714 0.98381 0.94449 1.01158 1.22009 0.92186 0.93584 0.92780 1.48299 1.32576 1.10028 1.42571 1.16439 0.79398 0.84660 0.79720 1.90830 1.50829 1.58587 1.41787 1.20618 0.99393 0.94395 1.02240 1.22716 1.02411 0.82131 1.03167 1.43093 1.26029 1.06406 1.33330 1.17884 0.93219 0.87463 0.97442 1.21004 0.95493 1.01075 0.97517 1.21099 0.98462 0.92373 0.99043 1.21308 0.98471 0.96840 0.97824 1.21066 0.94582 0.99167 0.96306 1.20861 1.01728 0.90428 1.02092 1.25332 0.89409 0.99500 0.94908 1.70779 1.25863 0.98171 1.21838 1.22325 1.00103 0.80484 0.97617 0.93473 0.78205 0.96018 0.95805 0.90582 0.90133 0.91187 0.91008 0.79133 0.84795 0.84775 0.85192 0.84790 0.84863 0.76960 0.89838 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.04 13.06 55.49 0.72 -28.32 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -19.05 5.55 -59.91 -0.33 -19.38 16 10 C 0.17 3.36 5.72 -4.04 -0.02 3.34 16 11 C -0.11 -1.78 3.03 -88.59 -0.27 -2.05 16 12 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 13 C -0.13 -1.69 6.42 -24.90 -0.16 -1.85 16 14 C 0.12 1.58 5.52 -3.07 -0.02 1.56 16 15 N -0.60 -9.95 3.33 -171.96 -0.57 -10.52 16 16 C 0.61 10.56 7.84 -12.57 -0.10 10.46 16 17 O -0.54 -11.01 17.14 5.26 0.09 -10.92 16 18 C -0.04 -0.55 6.82 -83.09 -0.57 -1.12 16 19 C 0.03 0.35 10.57 -16.29 -0.17 0.17 16 20 N -0.41 -3.72 2.97 -61.91 -0.18 -3.90 16 21 C 0.13 0.95 6.63 -83.59 -0.55 0.40 16 22 C -0.13 -0.84 9.46 -39.40 -0.37 -1.21 16 23 C -0.09 -0.44 10.04 -39.61 -0.40 -0.83 16 24 C -0.13 -0.51 10.04 -39.55 -0.40 -0.90 16 25 C -0.09 -0.37 10.04 -39.61 -0.40 -0.77 16 26 C -0.13 -0.68 9.46 -39.41 -0.37 -1.05 16 27 C 0.19 1.69 11.88 -89.68 -1.07 0.62 16 28 N -0.45 -5.46 8.75 -10.97 -0.10 -5.55 16 29 C 0.12 2.10 6.32 -2.65 -0.02 2.09 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.38 10.58 7.67 -40.82 -0.31 10.27 16 32 H 0.02 0.45 7.96 -51.93 -0.41 0.03 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.90 7.74 -51.93 -0.40 0.50 16 37 H 0.07 0.95 7.62 -51.92 -0.40 0.56 16 38 H 0.19 1.85 7.11 -52.49 -0.37 1.48 16 39 H 0.13 0.77 6.78 -52.49 -0.36 0.42 16 40 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.13 0.25 8.06 -52.49 -0.42 -0.17 16 42 H 0.13 0.23 8.06 -52.49 -0.42 -0.19 16 43 H 0.13 0.41 6.74 -52.49 -0.35 0.06 16 44 H 0.21 0.95 7.03 -52.49 -0.37 0.58 16 45 H 0.08 1.71 8.04 -51.93 -0.42 1.30 16 46 H 0.07 1.32 7.90 -51.92 -0.41 0.91 16 LS Contribution 384.32 15.07 5.79 5.79 Total: -1.00 -36.23 384.32 -11.03 -47.27 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.30 Total: 6.31 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -5.13 Total: 1.30 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -0.46 Total: -67.68 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.23 -11.03 -47.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317324054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.353 kcal (2) G-P(sol) polarization free energy of solvation -36.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds