Wall clock time and date at job start Sat Apr 11 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99842 * 2 1 4 4 H 1.48500 * 109.47134 * 239.99854 * 3 2 1 5 5 H 1.48501 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46964 * 120.00004 * 3 2 1 7 7 C 1.38815 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99869 * 179.97438 * 7 2 1 9 9 N 1.36926 * 120.00032 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00241 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47635 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.91356 * 51.09852 * 11 10 9 13 13 C 1.55153 * 111.00660 * 175.00304 * 11 10 9 14 14 C 1.54321 * 102.94354 * 153.57584 * 13 11 10 15 15 N 1.47019 * 107.27150 * 337.80958 * 14 13 11 16 16 C 1.34783 * 125.64913 * 178.90623 * 15 14 13 17 17 O 1.21622 * 119.99691 * 180.02562 * 16 15 14 18 18 C 1.47309 * 120.00107 * 0.02562 * 16 15 14 19 19 C 1.36442 * 126.19081 * 180.02562 * 18 16 15 20 20 N 1.36138 * 106.76153 * 180.02562 * 19 18 16 21 21 C 1.40215 * 126.21613 * 179.97438 * 20 19 18 22 22 C 1.38827 * 120.06435 * 359.72747 * 21 20 19 23 23 C 1.38125 * 119.93177 * 179.72094 * 22 21 20 24 24 C 1.38273 * 120.06904 * 0.57251 * 23 22 21 25 25 C 1.38280 * 120.12533 * 359.68241 * 24 23 22 26 26 C 1.38119 * 120.06846 * 0.03669 * 25 24 23 27 27 C 1.36108 * 107.56811 * 0.24056 * 20 19 18 28 28 N 1.30157 * 109.00181 * 359.59297 * 27 20 19 29 29 C 1.47422 * 108.70453 * 359.16575 * 15 14 13 30 30 H 0.97001 * 120.00600 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00395 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47074 * 60.00399 * 10 9 7 33 33 H 1.09002 * 109.47096 * 300.00822 * 10 9 7 34 34 H 1.09000 * 110.72284 * 35.21469 * 13 11 10 35 35 H 1.09002 * 110.87292 * 272.01116 * 13 11 10 36 36 H 1.08998 * 109.88599 * 218.38853 * 14 13 11 37 37 H 1.09007 * 110.01123 * 97.29401 * 14 13 11 38 38 H 1.08001 * 126.61592 * 0.02562 * 19 18 16 39 39 H 1.07999 * 120.03026 * 359.96511 * 22 21 20 40 40 H 1.07999 * 119.96485 * 180.25140 * 23 22 21 41 41 H 1.07991 * 119.94024 * 179.69957 * 24 23 22 42 42 H 1.08001 * 119.96294 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.03368 * 180.02562 * 26 25 24 44 44 H 1.07994 * 125.49769 * 179.76496 * 27 20 19 45 45 H 1.08996 * 110.36898 * 142.74592 * 29 15 14 46 46 H 1.09009 * 110.36933 * 265.06885 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.3247 -4.6994 -0.7941 13 6 1.7991 -6.1800 -0.1294 14 6 0.8249 -7.1646 0.5510 15 7 -0.0326 -6.3788 1.4503 16 6 -1.0298 -6.8697 2.2126 17 8 -1.6770 -6.1232 2.9218 18 6 -1.3357 -8.3105 2.1869 19 6 -2.3121 -8.9397 2.9027 20 7 -2.2456 -10.2607 2.5805 21 6 -3.0669 -11.2789 3.0853 22 6 -4.0587 -10.9787 4.0091 23 6 -4.8700 -11.9829 4.5003 24 6 -4.6874 -13.2880 4.0816 25 6 -3.6969 -13.5909 3.1655 26 6 -2.8863 -12.5901 2.6665 27 6 -1.2332 -10.4145 1.6839 28 7 -0.6968 -9.2525 1.4470 29 6 0.3749 -4.9640 1.3754 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6853 -3.7149 0.8878 33 1 2.6841 -3.7141 -0.8921 34 1 2.7524 -6.1540 0.3985 35 1 1.9468 -6.4451 -1.1763 36 1 1.3848 -7.9034 1.1243 37 1 0.2140 -7.6643 -0.2008 38 1 -3.0041 -8.4787 3.5919 39 1 -4.1983 -9.9603 4.3405 40 1 -5.6443 -11.7493 5.2159 41 1 -5.3197 -14.0723 4.4706 42 1 -3.5569 -14.6111 2.8400 43 1 -2.1132 -12.8272 1.9506 44 1 -0.9265 -11.3493 1.2386 45 1 -0.4983 -4.3142 1.4334 46 1 1.0776 -4.7287 2.1749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317324054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:57 Heat of formation + Delta-G solvation = 56.699789 kcal Electronic energy + Delta-G solvation = -27782.021849 eV Core-core repulsion = 23865.286854 eV Total energy + Delta-G solvation = -3916.734995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.57060 -40.97815 -39.95155 -38.76934 -36.43836 -35.29651 -33.87868 -32.31276 -32.04096 -30.94049 -30.47517 -29.86717 -27.38542 -25.61590 -24.52391 -24.34754 -23.41174 -22.42048 -21.92830 -21.35746 -20.45277 -19.52380 -19.00126 -17.86956 -17.48901 -17.06894 -16.89316 -16.64032 -16.36303 -15.91954 -15.79172 -15.51005 -15.27976 -15.12582 -15.09111 -14.68311 -14.60141 -14.31041 -14.10706 -13.85217 -13.75342 -13.50097 -13.10395 -12.96480 -12.70356 -12.65551 -12.29231 -12.12434 -12.09289 -11.88349 -11.80503 -11.67781 -11.56696 -11.41878 -11.17204 -10.91542 -10.08381 -10.03800 -9.66670 -9.34998 -8.99147 -7.93201 -5.22832 -0.28822 0.30730 0.68012 1.38026 1.42955 1.47380 1.51573 1.57516 1.99043 2.35707 2.57379 2.76589 3.15809 3.39377 3.46948 3.60934 3.62724 3.70537 3.87630 3.88961 3.99744 4.10224 4.20918 4.23316 4.36317 4.37255 4.40720 4.48716 4.61657 4.64569 4.72459 4.75000 4.86269 4.95534 4.97067 4.99053 5.09343 5.12194 5.22409 5.32409 5.36534 5.40104 5.44197 5.50433 5.51268 5.77027 6.10129 6.27948 6.44382 6.60691 7.04898 7.33894 8.10119 8.32563 9.30408 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029941 B = 0.001806 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.963654 B =15504.036351 C =16279.751925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.977 3.023 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.748 5.748 10 C 0.165 3.835 11 C -0.095 4.095 12 H 0.074 0.926 13 C -0.113 4.113 14 C 0.123 3.877 15 N -0.606 5.606 16 C 0.602 3.398 17 O -0.589 6.589 18 C -0.072 4.072 19 C 0.036 3.964 20 N -0.403 5.403 21 C 0.101 3.899 22 C -0.148 4.148 23 C -0.100 4.100 24 C -0.123 4.123 25 C -0.094 4.094 26 C -0.130 4.130 27 C 0.207 3.793 28 N -0.471 5.471 29 C 0.120 3.880 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.026 0.974 33 H 0.037 0.963 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.196 0.804 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.157 0.843 44 H 0.259 0.741 45 H 0.046 0.954 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.542 -37.659 5.663 38.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.806 3.194 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.391 5.391 10 C 0.039 3.961 11 C -0.115 4.115 12 H 0.093 0.907 13 C -0.152 4.152 14 C 0.002 3.998 15 N -0.337 5.337 16 C 0.391 3.609 17 O -0.471 6.471 18 C -0.198 4.198 19 C -0.102 4.102 20 N -0.079 5.079 21 C 0.010 3.990 22 C -0.168 4.168 23 C -0.119 4.119 24 C -0.141 4.141 25 C -0.113 4.113 26 C -0.149 4.149 27 C -0.076 4.076 28 N -0.189 5.189 29 C -0.003 4.003 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.213 0.787 39 H 0.146 0.854 40 H 0.167 0.833 41 H 0.172 0.828 42 H 0.180 0.820 43 H 0.174 0.826 44 H 0.275 0.725 45 H 0.064 0.936 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.116 -37.068 5.541 37.976 hybrid contribution -0.907 1.592 0.719 1.968 sum -7.022 -35.476 6.260 36.702 Atomic orbital electron populations 1.69837 1.06816 1.26115 1.59562 1.25641 0.96387 1.01384 1.03752 0.85154 0.77103 0.78861 0.78288 1.19999 1.22368 1.20404 1.19654 0.91665 0.85295 1.41166 0.90195 1.42626 1.05585 1.01393 1.89470 1.20753 0.93222 0.83621 0.98535 1.22354 0.97871 0.95975 0.95276 0.90715 1.22726 0.98185 0.91159 1.03094 1.22122 0.91858 0.93425 0.92436 1.48401 1.32896 1.09459 1.42908 1.17016 0.78821 0.86096 0.78923 1.90780 1.52420 1.60155 1.43736 1.20180 1.01641 0.93036 1.04951 1.22769 1.01596 0.83319 1.02500 1.43166 1.26079 1.05837 1.32855 1.18166 0.94024 0.87827 0.98990 1.21164 0.96104 1.01495 0.97994 1.21359 0.98583 0.92569 0.99358 1.21699 0.98366 0.96955 0.97086 1.21461 0.93875 1.00220 0.95714 1.21197 1.02197 0.89466 1.02023 1.26192 0.88013 0.99952 0.93474 1.70679 1.26866 0.98805 1.22565 1.22100 0.98454 0.81394 0.98308 0.94104 0.79722 0.95621 0.94477 0.89191 0.87412 0.89941 0.90362 0.78748 0.85385 0.83301 0.82833 0.82032 0.82587 0.72526 0.93561 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.44 13.06 21.65 0.28 -62.16 16 2 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 3 Si 0.98 47.70 29.55 68.60 2.03 49.73 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.25 -14.22 9.99 84.04 0.84 -13.38 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.75 -39.77 5.55 -343.46 -1.90 -41.67 16 10 C 0.17 6.69 5.72 86.38 0.49 7.18 16 11 C -0.10 -3.24 3.03 -9.48 -0.03 -3.27 16 12 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 13 C -0.11 -2.74 6.42 31.78 0.20 -2.54 16 14 C 0.12 3.18 5.52 86.73 0.48 3.66 16 15 N -0.61 -20.70 3.33 -816.21 -2.72 -23.42 16 16 C 0.60 22.07 7.84 86.63 0.68 22.75 16 17 O -0.59 -25.94 17.14 -4.10 -0.07 -26.01 16 18 C -0.07 -2.06 6.82 40.50 0.28 -1.78 16 19 C 0.04 0.83 10.57 83.61 0.88 1.71 16 20 N -0.40 -6.84 2.97 -349.77 -1.04 -7.88 16 21 C 0.10 1.30 6.63 38.08 0.25 1.55 16 22 C -0.15 -1.81 9.46 22.38 0.21 -1.60 16 23 C -0.10 -0.80 10.04 22.25 0.22 -0.58 16 24 C -0.12 -0.62 10.04 22.29 0.22 -0.40 16 25 C -0.09 -0.42 10.04 22.25 0.22 -0.20 16 26 C -0.13 -0.93 9.46 22.38 0.21 -0.72 16 27 C 0.21 3.18 11.88 180.02 2.14 5.31 16 28 N -0.47 -10.93 8.75 -188.63 -1.65 -12.58 16 29 C 0.12 4.59 6.32 86.78 0.55 5.14 16 30 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.37 21.39 7.67 -92.71 -0.71 20.68 16 32 H 0.03 1.04 7.96 -2.39 -0.02 1.02 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.98 8.04 -2.39 -0.02 1.96 16 35 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 1.97 7.74 -2.39 -0.02 1.95 16 37 H 0.08 1.95 7.62 -2.38 -0.02 1.93 16 38 H 0.20 4.14 7.11 -2.91 -0.02 4.11 16 39 H 0.13 1.59 6.78 -2.91 -0.02 1.57 16 40 H 0.15 0.63 8.06 -2.91 -0.02 0.60 16 41 H 0.15 0.02 8.06 -2.92 -0.02 0.00 16 42 H 0.16 -0.19 8.06 -2.91 -0.02 -0.21 16 43 H 0.16 0.28 6.74 -2.91 -0.02 0.27 16 44 H 0.26 1.19 7.03 -2.91 -0.02 1.17 16 45 H 0.05 2.08 8.04 -2.39 -0.02 2.06 16 46 H 0.06 2.46 7.90 -2.38 -0.02 2.44 16 Total: -1.00 -82.42 384.32 3.55 -78.87 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.29 Total: 26.57 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 8.33 Total: 18.54 kcal Atomic # 7 Polarization: -140.68 SS G_CDS: -7.03 Total: -147.71 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.07 Total: -26.01 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -82.42 3.55 -78.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317324054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.569 kcal (2) G-P(sol) polarization free energy of solvation -82.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds