Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72454 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71950 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72210 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.07999 * 119.99931 * 180.27548 * 7 2 1 9 9 N 1.36935 * 119.99986 * 0.27719 * 7 2 1 10 10 C 1.46507 * 119.99742 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.46913 * 35.00718 * 10 9 7 12 12 C 1.52999 * 109.46810 * 155.00035 * 10 9 7 13 13 N 1.46497 * 109.47588 * 305.00565 * 12 10 9 14 14 C 1.34773 * 120.00445 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00152 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00343 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47486 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47456 * 180.02562 * 17 16 14 19 19 C 1.38391 * 120.00410 * 124.99836 * 18 17 16 20 20 N 1.32130 * 119.99455 * 179.97438 * 19 18 17 21 21 C 1.32146 * 120.00229 * 0.02562 * 20 19 18 22 22 C 1.38345 * 120.00354 * 0.02562 * 21 20 19 23 23 N 1.32125 * 119.99645 * 304.72106 * 18 17 16 24 24 C 1.50698 * 109.47421 * 275.00143 * 10 9 7 25 25 C 1.38232 * 120.00064 * 319.73237 * 24 10 9 26 26 C 1.38238 * 119.99658 * 179.78788 * 25 24 10 27 27 C 1.38227 * 120.00026 * 0.43848 * 26 25 24 28 28 C 1.38240 * 120.00275 * 359.81080 * 27 26 25 29 29 C 1.38229 * 119.99678 * 359.97438 * 28 27 26 30 30 H 0.97001 * 120.00638 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00077 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.47353 * 65.00191 * 12 10 9 33 33 H 1.08997 * 109.47523 * 185.00140 * 12 10 9 34 34 H 0.97002 * 119.99867 * 359.97438 * 13 12 10 35 35 H 1.09000 * 109.47170 * 300.00793 * 16 14 13 36 36 H 1.09006 * 109.46849 * 59.99982 * 16 14 13 37 37 H 1.09007 * 109.46615 * 300.00086 * 17 16 14 38 38 H 1.08992 * 109.46903 * 59.99648 * 17 16 14 39 39 H 1.07988 * 120.00079 * 359.95448 * 19 18 17 40 40 H 1.08004 * 120.00360 * 180.02562 * 21 20 19 41 41 H 1.08006 * 120.00180 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.00172 * 359.97438 * 25 24 10 43 43 H 1.07999 * 119.99712 * 180.26887 * 26 25 24 44 44 H 1.08001 * 119.99941 * 179.83453 * 27 26 25 45 45 H 1.07992 * 119.99889 * 179.97438 * 28 27 26 46 46 H 1.07998 * 120.00119 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1091 1.6933 -1.2091 5 1 1.2854 2.7464 -0.0069 6 1 3.0990 1.6992 1.2159 7 6 2.0101 -1.2022 0.0059 8 1 3.0901 -1.2023 0.0104 9 7 1.3254 -2.3881 0.0059 10 6 2.0578 -3.6569 0.0115 11 1 2.9662 -3.5494 0.6043 12 6 1.1782 -4.7508 0.6203 13 7 0.7264 -4.3311 1.9491 14 6 -0.0663 -5.1412 2.6784 15 8 -0.4053 -6.2178 2.2348 16 6 -0.5306 -4.7097 4.0457 17 6 -1.4103 -5.8035 4.6543 18 6 -1.8751 -5.3718 6.0213 19 6 -3.2267 -5.3491 6.3174 20 7 -3.6340 -4.9710 7.5162 21 6 -2.7508 -4.6141 8.4320 22 6 -1.3996 -4.6358 8.1356 23 7 -0.9918 -5.0202 6.9388 24 6 2.4217 -4.0332 -1.4016 25 6 1.5148 -3.8330 -2.4255 26 6 1.8503 -4.1741 -3.7224 27 6 3.0891 -4.7239 -3.9940 28 6 3.9941 -4.9290 -2.9693 29 6 3.6603 -4.5837 -1.6731 30 1 -0.4851 -0.8400 -0.0004 31 1 0.3554 -2.3880 0.0015 32 1 0.3131 -4.9201 -0.0208 33 1 1.7527 -5.6731 0.7063 34 1 0.9978 -3.4702 2.3042 35 1 0.3347 -4.5410 4.6867 36 1 -1.1046 -3.7870 3.9600 37 1 -2.2756 -5.9724 4.0133 38 1 -0.8360 -6.7259 4.7400 39 1 -3.9485 -5.6400 5.5687 40 1 -3.0837 -4.3054 9.4120 41 1 -0.6778 -4.3437 8.8841 42 1 0.5454 -3.4072 -2.2127 43 1 1.1434 -4.0137 -4.5230 44 1 3.3502 -4.9930 -5.0069 45 1 4.9617 -5.3589 -3.1815 46 1 4.3671 -4.7443 -0.8725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317727829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = 41.140781 kcal Electronic energy + Delta-G solvation = -27922.268025 eV Core-core repulsion = 24004.858341 eV Total energy + Delta-G solvation = -3917.409684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33926 -39.61243 -38.84109 -36.13913 -35.08932 -33.81582 -33.66993 -32.17638 -30.66266 -30.48090 -29.43172 -27.65310 -25.73855 -24.74115 -23.58319 -23.00548 -22.14213 -21.91299 -20.25253 -19.87540 -17.86815 -17.54527 -17.29793 -17.01152 -16.51309 -15.98404 -15.67781 -15.61672 -15.10413 -14.79595 -14.65722 -14.40518 -13.92204 -13.83576 -13.67921 -13.26604 -13.08382 -12.95399 -12.87800 -12.55557 -12.34278 -12.17494 -11.95034 -11.82595 -11.47954 -11.18489 -11.11872 -11.00716 -10.83900 -10.69364 -10.41601 -10.06346 -9.75352 -9.44570 -9.32451 -9.30205 -9.11149 -8.76504 -8.48038 -8.25588 -7.23043 -6.20909 -3.24538 0.50092 0.87397 1.79244 1.85203 2.84967 3.33547 3.45958 3.48466 3.50952 3.66113 3.79642 4.01523 4.21096 4.24064 4.51698 4.56799 4.77782 4.87560 5.01694 5.13404 5.14895 5.22740 5.24928 5.28744 5.34679 5.42458 5.47616 5.52217 5.56524 5.70020 5.74966 5.83048 5.90493 5.96192 6.01080 6.11598 6.13861 6.32740 6.41150 6.54244 6.71765 6.86792 6.93817 7.00757 7.19383 7.45024 7.51895 7.70628 7.80524 8.45246 8.63230 9.04662 9.91782 10.04647 11.26035 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009893 B = 0.002642 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.660992 B =10593.673728 C =12674.173339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.037 4.037 3 Si 1.077 2.923 4 H -0.295 1.295 5 H -0.285 1.285 6 H -0.294 1.294 7 C -0.334 4.334 8 H 0.065 0.935 9 N -0.724 5.724 10 C 0.204 3.796 11 H 0.066 0.934 12 C 0.120 3.880 13 N -0.714 5.714 14 C 0.512 3.488 15 O -0.555 6.555 16 C -0.133 4.133 17 C -0.049 4.049 18 C 0.087 3.913 19 C 0.053 3.947 20 N -0.437 5.437 21 C 0.038 3.962 22 C 0.055 3.945 23 N -0.435 5.435 24 C -0.081 4.081 25 C -0.085 4.085 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.128 4.128 29 C -0.120 4.120 30 H 0.255 0.745 31 H 0.369 0.631 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.411 0.589 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.170 0.830 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.209 -11.309 9.380 14.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.235 4.235 3 Si 0.908 3.092 4 H -0.223 1.223 5 H -0.211 1.211 6 H -0.222 1.222 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.367 5.367 10 C 0.093 3.907 11 H 0.084 0.916 12 C -0.005 4.005 13 N -0.366 5.366 14 C 0.299 3.701 15 O -0.434 6.434 16 C -0.173 4.173 17 C -0.088 4.088 18 C -0.053 4.053 19 C -0.107 4.107 20 N -0.151 5.151 21 C -0.122 4.122 22 C -0.105 4.105 23 N -0.151 5.151 24 C -0.085 4.085 25 C -0.104 4.104 26 C -0.145 4.145 27 C -0.152 4.152 28 C -0.146 4.146 29 C -0.139 4.139 30 H 0.066 0.934 31 H 0.203 0.797 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.247 0.753 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.188 0.812 40 H 0.186 0.814 41 H 0.187 0.813 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.400 -10.356 9.095 13.788 hybrid contribution 0.182 -1.028 0.009 1.044 sum -0.218 -11.383 9.103 14.577 Atomic orbital electron populations 1.70911 1.06030 1.28412 1.52990 1.25714 0.96937 1.00882 0.99981 0.83283 0.74304 0.75728 0.75936 1.22265 1.21061 1.22186 1.19988 0.92022 0.85383 1.49065 0.91669 1.42457 1.04781 1.00249 1.89171 1.19414 0.94948 0.86001 0.90371 0.91587 1.21587 0.98502 0.97213 0.83193 1.45995 1.50621 1.21988 1.18012 1.20534 0.78254 0.84440 0.86902 1.90674 1.57354 1.22677 1.72682 1.21548 1.01759 0.99952 0.94080 1.20249 1.01026 0.98852 0.88672 1.22376 0.91181 0.95127 0.96646 1.23690 0.95348 0.96825 0.94795 1.68453 1.38307 1.06987 1.01385 1.23761 0.91106 0.97463 0.99851 1.23810 0.96126 0.95992 0.94582 1.68286 1.38167 1.07501 1.01146 1.20946 0.93665 0.95759 0.98103 1.20941 0.99858 0.97422 0.92140 1.21099 0.96788 0.99841 0.96732 1.20989 0.94488 1.01122 0.98574 1.20994 0.99072 1.01362 0.93211 1.21005 0.96560 0.99818 0.96476 0.93407 0.79659 0.91727 0.91436 0.75296 0.87944 0.88811 0.88916 0.88727 0.81245 0.81442 0.81300 0.86352 0.86806 0.86966 0.86879 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.21 13.70 55.49 0.76 -26.45 16 2 C -0.04 -1.00 5.50 -17.43 -0.10 -1.10 16 3 Si 1.08 24.85 29.92 -169.99 -5.09 19.77 16 4 H -0.30 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.33 -8.58 9.92 -15.06 -0.15 -8.73 16 8 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 9 N -0.72 -16.02 3.81 -54.55 -0.21 -16.23 16 10 C 0.20 3.71 2.64 -69.08 -0.18 3.53 16 11 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 12 C 0.12 1.97 5.21 -4.04 -0.02 1.95 16 13 N -0.71 -11.10 5.39 -60.30 -0.32 -11.43 16 14 C 0.51 7.71 7.83 -10.99 -0.09 7.63 16 15 O -0.55 -9.87 15.98 5.55 0.09 -9.78 16 16 C -0.13 -1.58 5.56 -27.88 -0.16 -1.74 16 17 C -0.05 -0.53 4.92 -27.89 -0.14 -0.66 16 18 C 0.09 0.93 6.17 -82.41 -0.51 0.42 16 19 C 0.05 0.54 10.85 -17.37 -0.19 0.35 16 20 N -0.44 -4.63 10.50 -13.06 -0.14 -4.77 16 21 C 0.04 0.32 11.22 -17.38 -0.20 0.12 16 22 C 0.05 0.47 11.22 -17.37 -0.19 0.27 16 23 N -0.44 -4.79 10.06 -9.28 -0.09 -4.89 16 24 C -0.08 -1.46 4.92 -104.63 -0.51 -1.97 16 25 C -0.09 -1.56 9.32 -39.58 -0.37 -1.93 16 26 C -0.13 -2.04 10.05 -39.59 -0.40 -2.44 16 27 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 28 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 29 C -0.12 -1.92 9.67 -39.58 -0.38 -2.30 16 30 H 0.25 7.25 6.77 -40.82 -0.28 6.97 16 31 H 0.37 8.58 6.63 -40.82 -0.27 8.31 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.41 6.48 8.14 -40.82 -0.33 6.15 16 35 H 0.10 1.17 7.97 -51.93 -0.41 0.75 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 0.93 7.84 -51.93 -0.41 0.53 16 38 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 39 H 0.17 1.30 7.95 -52.49 -0.42 0.89 16 40 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.12 2.30 7.73 -52.49 -0.41 1.89 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.11 1.62 8.04 -52.49 -0.42 1.20 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -32.61 395.44 -9.78 -42.39 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -6.37 Total: 16.66 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -4.37 Total: -11.24 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.00 Total: -63.76 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.09 Total: 19.77 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.61 -9.78 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317727829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.530 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds