Wall clock time and date at job start Sat Apr 11 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72454 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71950 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72210 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.07999 * 119.99931 * 180.27548 * 7 2 1 9 9 N 1.36935 * 119.99986 * 0.27719 * 7 2 1 10 10 C 1.46507 * 119.99742 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.46913 * 35.00718 * 10 9 7 12 12 C 1.52999 * 109.46810 * 155.00035 * 10 9 7 13 13 N 1.46497 * 109.47588 * 305.00565 * 12 10 9 14 14 C 1.34773 * 120.00445 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00152 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00343 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47486 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47456 * 180.02562 * 17 16 14 19 19 C 1.38391 * 120.00410 * 124.99836 * 18 17 16 20 20 N 1.32130 * 119.99455 * 179.97438 * 19 18 17 21 21 C 1.32146 * 120.00229 * 0.02562 * 20 19 18 22 22 C 1.38345 * 120.00354 * 0.02562 * 21 20 19 23 23 N 1.32125 * 119.99645 * 304.72106 * 18 17 16 24 24 C 1.50698 * 109.47421 * 275.00143 * 10 9 7 25 25 C 1.38232 * 120.00064 * 319.73237 * 24 10 9 26 26 C 1.38238 * 119.99658 * 179.78788 * 25 24 10 27 27 C 1.38227 * 120.00026 * 0.43848 * 26 25 24 28 28 C 1.38240 * 120.00275 * 359.81080 * 27 26 25 29 29 C 1.38229 * 119.99678 * 359.97438 * 28 27 26 30 30 H 0.97001 * 120.00638 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00077 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.47353 * 65.00191 * 12 10 9 33 33 H 1.08997 * 109.47523 * 185.00140 * 12 10 9 34 34 H 0.97002 * 119.99867 * 359.97438 * 13 12 10 35 35 H 1.09000 * 109.47170 * 300.00793 * 16 14 13 36 36 H 1.09006 * 109.46849 * 59.99982 * 16 14 13 37 37 H 1.09007 * 109.46615 * 300.00086 * 17 16 14 38 38 H 1.08992 * 109.46903 * 59.99648 * 17 16 14 39 39 H 1.07988 * 120.00079 * 359.95448 * 19 18 17 40 40 H 1.08004 * 120.00360 * 180.02562 * 21 20 19 41 41 H 1.08006 * 120.00180 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.00172 * 359.97438 * 25 24 10 43 43 H 1.07999 * 119.99712 * 180.26887 * 26 25 24 44 44 H 1.08001 * 119.99941 * 179.83453 * 27 26 25 45 45 H 1.07992 * 119.99889 * 179.97438 * 28 27 26 46 46 H 1.07998 * 120.00119 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1091 1.6933 -1.2091 5 1 1.2854 2.7464 -0.0069 6 1 3.0990 1.6992 1.2159 7 6 2.0101 -1.2022 0.0059 8 1 3.0901 -1.2023 0.0104 9 7 1.3254 -2.3881 0.0059 10 6 2.0578 -3.6569 0.0115 11 1 2.9662 -3.5494 0.6043 12 6 1.1782 -4.7508 0.6203 13 7 0.7264 -4.3311 1.9491 14 6 -0.0663 -5.1412 2.6784 15 8 -0.4053 -6.2178 2.2348 16 6 -0.5306 -4.7097 4.0457 17 6 -1.4103 -5.8035 4.6543 18 6 -1.8751 -5.3718 6.0213 19 6 -3.2267 -5.3491 6.3174 20 7 -3.6340 -4.9710 7.5162 21 6 -2.7508 -4.6141 8.4320 22 6 -1.3996 -4.6358 8.1356 23 7 -0.9918 -5.0202 6.9388 24 6 2.4217 -4.0332 -1.4016 25 6 1.5148 -3.8330 -2.4255 26 6 1.8503 -4.1741 -3.7224 27 6 3.0891 -4.7239 -3.9940 28 6 3.9941 -4.9290 -2.9693 29 6 3.6603 -4.5837 -1.6731 30 1 -0.4851 -0.8400 -0.0004 31 1 0.3554 -2.3880 0.0015 32 1 0.3131 -4.9201 -0.0208 33 1 1.7527 -5.6731 0.7063 34 1 0.9978 -3.4702 2.3042 35 1 0.3347 -4.5410 4.6867 36 1 -1.1046 -3.7870 3.9600 37 1 -2.2756 -5.9724 4.0133 38 1 -0.8360 -6.7259 4.7400 39 1 -3.9485 -5.6400 5.5687 40 1 -3.0837 -4.3054 9.4120 41 1 -0.6778 -4.3437 8.8841 42 1 0.5454 -3.4072 -2.2127 43 1 1.1434 -4.0137 -4.5230 44 1 3.3502 -4.9930 -5.0069 45 1 4.9617 -5.3589 -3.1815 46 1 4.3671 -4.7443 -0.8725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317727829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:01 Heat of formation + Delta-G solvation = 20.533503 kcal Electronic energy + Delta-G solvation = -27923.161624 eV Core-core repulsion = 24004.858341 eV Total energy + Delta-G solvation = -3918.303283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06584 -40.90814 -40.12499 -37.61448 -35.94936 -35.42030 -34.49140 -33.73521 -31.74810 -31.53732 -31.03737 -29.00914 -26.74506 -25.57792 -25.34317 -24.27682 -23.32695 -22.95062 -21.62883 -21.12520 -19.45736 -18.64581 -18.29246 -17.86881 -17.81007 -17.14364 -16.86510 -16.59922 -16.33010 -16.11480 -15.90687 -15.74073 -15.52105 -15.07630 -14.83119 -14.42210 -14.31047 -14.18096 -14.10180 -13.68447 -13.43401 -13.35915 -13.07885 -12.74769 -12.69320 -12.58717 -12.50741 -12.34806 -12.06851 -12.03846 -11.91552 -11.76303 -11.28448 -11.07918 -10.91633 -10.18707 -10.10892 -10.02639 -9.74255 -9.58669 -9.13331 -8.33189 -5.30091 -0.19373 0.14563 0.52577 0.58203 1.59923 1.60449 1.67928 1.83958 2.18919 2.70771 2.72962 2.95526 3.08257 3.36484 3.43649 3.50941 3.62611 3.69838 3.91606 3.95191 4.06948 4.08511 4.09200 4.17839 4.27071 4.29596 4.34522 4.39575 4.45914 4.57530 4.62511 4.64221 4.72384 4.77265 4.92821 4.95894 5.02031 5.16446 5.23513 5.39999 5.44906 5.63147 5.63829 5.66868 5.86942 6.20439 6.30761 6.51789 6.53351 6.81333 7.07621 7.18584 7.97287 8.09086 9.17213 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009893 B = 0.002642 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.660992 B =10593.673728 C =12674.173339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.093 4.093 3 Si 1.119 2.881 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.319 4.319 8 H 0.064 0.936 9 N -0.729 5.729 10 C 0.210 3.790 11 H 0.067 0.933 12 C 0.132 3.868 13 N -0.714 5.714 14 C 0.513 3.487 15 O -0.582 6.582 16 C -0.121 4.121 17 C -0.042 4.042 18 C 0.074 3.926 19 C 0.045 3.955 20 N -0.461 5.461 21 C 0.042 3.958 22 C 0.053 3.947 23 N -0.459 5.459 24 C -0.103 4.103 25 C -0.112 4.112 26 C -0.136 4.136 27 C -0.130 4.130 28 C -0.124 4.124 29 C -0.127 4.127 30 H 0.244 0.756 31 H 0.361 0.639 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.410 0.590 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.184 0.816 40 H 0.202 0.798 41 H 0.202 0.798 42 H 0.092 0.908 43 H 0.129 0.871 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 -11.823 9.846 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.285 4.285 3 Si 0.946 3.054 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.451 4.451 8 H 0.082 0.918 9 N -0.370 5.370 10 C 0.100 3.900 11 H 0.085 0.915 12 C 0.007 3.993 13 N -0.366 5.366 14 C 0.301 3.699 15 O -0.463 6.463 16 C -0.162 4.162 17 C -0.080 4.080 18 C -0.066 4.066 19 C -0.114 4.114 20 N -0.176 5.176 21 C -0.118 4.118 22 C -0.107 4.107 23 N -0.175 5.175 24 C -0.106 4.106 25 C -0.131 4.131 26 C -0.154 4.154 27 C -0.148 4.148 28 C -0.142 4.142 29 C -0.146 4.146 30 H 0.055 0.945 31 H 0.194 0.806 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.247 0.753 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.201 0.799 40 H 0.219 0.781 41 H 0.219 0.781 42 H 0.111 0.889 43 H 0.147 0.853 44 H 0.164 0.836 45 H 0.166 0.834 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.489 -10.921 9.549 14.583 hybrid contribution -0.335 -0.971 -0.130 1.036 sum 1.154 -11.892 9.419 15.215 Atomic orbital electron populations 1.71001 1.07101 1.27853 1.56122 1.26853 0.96973 1.03997 1.00724 0.82709 0.73424 0.72350 0.76923 1.21323 1.22382 1.20139 1.20208 0.92037 0.86495 1.46312 0.91798 1.42473 1.04394 1.00859 1.89304 1.19465 0.94632 0.84766 0.91109 0.91494 1.21402 0.97649 0.96955 0.83323 1.46015 1.50806 1.22024 1.17706 1.21057 0.77398 0.83790 0.87700 1.90657 1.58260 1.23874 1.73527 1.21490 1.02220 1.00397 0.92047 1.20142 1.00745 0.98011 0.89151 1.22264 0.91523 0.96262 0.96505 1.23910 0.95448 0.96797 0.95248 1.68499 1.39276 1.07895 1.01922 1.24358 0.90935 0.95875 1.00650 1.24376 0.97089 0.94963 0.94293 1.68259 1.38823 1.08240 1.02204 1.20862 0.94885 0.97604 0.97256 1.20905 0.99264 0.99211 0.93721 1.21350 0.98142 0.99769 0.96105 1.21409 0.93442 0.99530 1.00377 1.21430 1.00403 1.00019 0.92329 1.21276 0.95840 0.99416 0.98070 0.94541 0.80623 0.93310 0.90414 0.75345 0.87185 0.88479 0.88604 0.89439 0.79857 0.78126 0.78147 0.88939 0.85328 0.83597 0.83374 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.93 13.70 21.65 0.30 -57.63 16 2 C -0.09 -5.12 5.50 84.86 0.47 -4.65 16 3 Si 1.12 50.27 29.92 68.60 2.05 52.32 16 4 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.32 -16.55 9.92 84.04 0.83 -15.71 16 8 H 0.06 3.29 7.83 -2.91 -0.02 3.27 16 9 N -0.73 -33.13 3.81 -326.49 -1.24 -34.37 16 10 C 0.21 7.75 2.64 44.24 0.12 7.87 16 11 H 0.07 2.45 7.94 -2.39 -0.02 2.43 16 12 C 0.13 4.43 5.21 86.38 0.45 4.88 16 13 N -0.71 -22.69 5.39 -463.07 -2.49 -25.19 16 14 C 0.51 15.71 7.83 87.66 0.69 16.39 16 15 O -0.58 -21.10 15.98 -3.04 -0.05 -21.15 16 16 C -0.12 -2.90 5.56 29.85 0.17 -2.74 16 17 C -0.04 -0.90 4.92 29.85 0.15 -0.76 16 18 C 0.07 1.55 6.17 42.55 0.26 1.82 16 19 C 0.04 0.88 10.85 84.68 0.92 1.80 16 20 N -0.46 -9.31 10.50 -195.23 -2.05 -11.36 16 21 C 0.04 0.62 11.22 84.67 0.95 1.57 16 22 C 0.05 0.81 11.22 84.67 0.95 1.76 16 23 N -0.46 -9.70 10.06 -183.29 -1.84 -11.55 16 24 C -0.10 -3.69 4.92 -19.87 -0.10 -3.79 16 25 C -0.11 -4.21 9.32 22.27 0.21 -4.00 16 26 C -0.14 -4.25 10.05 22.27 0.22 -4.03 16 27 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 28 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16 29 C -0.13 -3.85 9.67 22.27 0.22 -3.63 16 30 H 0.24 14.49 6.77 -92.71 -0.63 13.86 16 31 H 0.36 17.60 6.63 -92.71 -0.61 16.99 16 32 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.41 13.22 8.14 -92.71 -0.75 12.46 16 35 H 0.11 2.48 7.97 -2.39 -0.02 2.46 16 36 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.10 1.97 7.84 -2.38 -0.02 1.95 16 38 H 0.09 2.00 8.10 -2.39 -0.02 1.98 16 39 H 0.18 2.81 7.95 -2.92 -0.02 2.79 16 40 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.09 3.84 7.73 -2.91 -0.02 3.82 16 43 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 44 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 45 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 46 H 0.13 3.43 8.04 -2.91 -0.02 3.41 16 Total: -1.00 -71.23 395.44 1.39 -69.84 By element: Atomic # 1 Polarization: 48.73 SS G_CDS: -0.22 Total: 48.51 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 6.95 Total: -9.42 kcal Atomic # 7 Polarization: -132.76 SS G_CDS: -7.34 Total: -140.10 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.05 Total: -21.15 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.32 kcal Total: -71.23 1.39 -69.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317727829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.376 kcal (2) G-P(sol) polarization free energy of solvation -71.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds