Wall clock time and date at job start Sat Apr 11 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99845 * 2 1 4 4 H 1.48501 * 109.46921 * 239.99845 * 3 2 1 5 5 H 1.48496 * 109.47035 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47379 * 120.00172 * 3 2 1 7 7 C 1.38812 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00184 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99517 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99817 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47004 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47261 * 65.00039 * 11 10 9 13 13 N 1.46506 * 109.47289 * 304.99911 * 11 10 9 14 14 C 1.34767 * 120.00003 * 154.99849 * 13 11 10 15 15 O 1.21510 * 120.00518 * 0.02562 * 14 13 11 16 16 C 1.48186 * 120.00022 * 180.02562 * 14 13 11 17 17 C 1.39114 * 119.69354 * 180.02562 * 16 14 13 18 18 C 1.39295 * 118.97271 * 179.97438 * 17 16 14 19 19 N 1.39905 * 120.82252 * 179.97438 * 18 17 16 20 20 C 1.36630 * 125.67828 * 359.69582 * 19 18 17 21 21 C 1.34812 * 108.19647 * 179.82355 * 20 19 18 22 22 C 1.40975 * 107.48376 * 0.43090 * 21 20 19 23 23 C 1.34822 * 107.47631 * 359.72702 * 22 21 20 24 24 C 1.39280 * 118.35745 * 359.97438 * 18 17 16 25 25 C 1.38337 * 119.27636 * 359.97438 * 24 18 17 26 26 N 1.31606 * 120.97565 * 359.74787 * 25 24 18 27 27 C 1.53002 * 109.47143 * 184.99902 * 11 10 9 28 28 C 1.52998 * 117.50065 * 248.74722 * 27 11 10 29 29 C 1.52994 * 117.49912 * 180.08555 * 27 11 10 30 30 H 0.97002 * 119.99669 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00295 * 0.02562 * 9 7 2 32 32 H 1.08993 * 109.47129 * 60.00010 * 10 9 7 33 33 H 1.09004 * 109.46958 * 299.99720 * 10 9 7 34 34 H 0.96996 * 119.99678 * 335.00636 * 13 11 10 35 35 H 1.07996 * 120.51343 * 359.97438 * 17 16 14 36 36 H 1.08000 * 125.90207 * 0.02562 * 20 19 18 37 37 H 1.08007 * 126.25714 * 180.15728 * 21 20 19 38 38 H 1.07993 * 126.26168 * 179.72908 * 22 21 20 39 39 H 1.07996 * 125.89747 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.36561 * 179.97438 * 24 18 17 41 41 H 1.07996 * 119.50961 * 179.97438 * 25 24 18 42 42 H 1.09003 * 115.54690 * 34.41613 * 27 11 10 43 43 H 1.08996 * 117.49552 * 359.97438 * 28 27 11 44 44 H 1.08997 * 117.49793 * 145.02169 * 28 27 11 45 45 H 1.09000 * 117.50003 * 214.98539 * 29 27 11 46 46 H 1.09003 * 117.50438 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 6 1.0640 -4.8196 0.0022 12 1 0.4974 -4.8138 -0.9289 13 7 0.1449 -4.6758 1.1340 14 6 -1.0795 -5.2366 1.0833 15 8 -1.4211 -5.8620 0.0990 16 6 -2.0094 -5.0906 2.2278 17 6 -3.2716 -5.6726 2.1688 18 6 -4.1333 -5.5264 3.2534 19 7 -5.4115 -6.0951 3.2352 20 6 -5.9470 -6.8188 2.2075 21 6 -7.1905 -7.1989 2.5635 22 6 -7.4378 -6.6847 3.8526 23 6 -6.3340 -6.0143 4.2397 24 6 -3.6911 -4.8001 4.3565 25 6 -2.4210 -4.2521 4.3407 26 7 -1.6273 -4.4119 3.3032 27 6 1.8249 -6.1411 0.1279 28 6 1.8339 -7.0695 -1.0881 29 6 1.0023 -7.4310 0.1451 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0016 32 1 2.6855 -3.7140 0.8911 33 1 2.6841 -3.7148 -0.8889 34 1 0.4176 -4.1768 1.9198 35 1 -3.5785 -6.2291 1.2957 36 1 -5.4575 -7.0496 1.2729 37 1 -7.8741 -7.7859 1.9679 38 1 -8.3453 -6.8057 4.4253 39 1 -6.2021 -5.5015 5.1810 40 1 -4.3327 -4.6662 5.2149 41 1 -2.0745 -3.6879 5.1938 42 1 2.7239 -6.1091 0.7435 43 1 1.2975 -6.7391 -1.9775 44 1 2.7387 -7.6487 -1.2723 45 1 1.3603 -8.2479 0.7718 46 1 -0.0809 -7.3384 0.0665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323093660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:15 Heat of formation + Delta-G solvation = 102.334707 kcal Electronic energy + Delta-G solvation = -28657.943074 eV Core-core repulsion = 24743.186958 eV Total energy + Delta-G solvation = -3914.756116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.01274 -40.47067 -39.22309 -37.13183 -35.03651 -34.38767 -33.34401 -31.89511 -31.02679 -29.95049 -29.24950 -28.06685 -24.93858 -24.04092 -23.83364 -22.19877 -21.72086 -21.45067 -20.52564 -20.19259 -19.95633 -18.96351 -17.36070 -16.96655 -16.42414 -16.11790 -15.76370 -15.57710 -15.19969 -14.95960 -14.78619 -14.43106 -14.26887 -14.01704 -13.81349 -13.70231 -13.20939 -13.12855 -12.84576 -12.64307 -12.40423 -12.21603 -12.08047 -11.69527 -11.26497 -11.04643 -10.90200 -10.79675 -10.77445 -10.31084 -10.21088 -10.05292 -9.94275 -9.70645 -9.60896 -9.50776 -8.90395 -8.66665 -8.64416 -8.57616 -6.95360 -5.76554 -3.06564 0.34846 0.63487 2.11775 2.38004 2.69922 2.83136 3.20491 3.43685 3.48015 3.49095 3.75226 3.96880 4.14298 4.32996 4.37659 4.56119 4.67145 4.68978 4.88475 4.89224 5.06880 5.10108 5.15965 5.24960 5.26809 5.39805 5.41691 5.48186 5.52987 5.56665 5.77256 5.84351 5.89427 5.91965 5.96227 6.07656 6.16936 6.23443 6.35632 6.46170 6.50261 6.57829 6.66458 6.82846 6.89636 7.03134 7.49905 7.68487 7.87410 8.39456 8.41310 9.52525 10.08047 10.43393 11.45577 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010111 B = 0.003031 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.637416 B = 9236.332721 C =11177.555841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.166 3.834 12 H 0.090 0.910 13 N -0.680 5.680 14 C 0.573 3.427 15 O -0.538 6.538 16 C 0.121 3.879 17 C -0.139 4.139 18 C 0.178 3.822 19 N -0.399 5.399 20 C -0.009 4.009 21 C -0.188 4.188 22 C -0.186 4.186 23 C -0.015 4.015 24 C -0.181 4.181 25 C 0.133 3.867 26 N -0.459 5.459 27 C -0.163 4.163 28 C -0.169 4.169 29 C -0.186 4.186 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.026 0.974 33 H 0.037 0.963 34 H 0.416 0.584 35 H 0.154 0.846 36 H 0.169 0.831 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.167 0.833 40 H 0.145 0.855 41 H 0.173 0.827 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 -16.309 9.669 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.062 3.938 12 H 0.108 0.892 13 N -0.329 5.329 14 C 0.357 3.643 15 O -0.416 6.416 16 C -0.018 4.018 17 C -0.162 4.162 18 C 0.077 3.923 19 N -0.072 5.072 20 C -0.135 4.135 21 C -0.212 4.212 22 C -0.210 4.210 23 C -0.141 4.141 24 C -0.203 4.203 25 C -0.027 4.027 26 N -0.171 5.171 27 C -0.182 4.182 28 C -0.207 4.207 29 C -0.223 4.223 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.253 0.747 35 H 0.172 0.828 36 H 0.186 0.814 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.184 0.816 40 H 0.163 0.837 41 H 0.190 0.810 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.407 -16.129 8.942 20.268 hybrid contribution -0.625 0.915 0.456 1.198 sum -9.031 -15.214 9.398 20.034 Atomic orbital electron populations 1.69664 1.05107 1.25736 1.57344 1.24747 0.95489 0.97682 1.02834 0.86265 0.78500 0.83539 0.77832 1.21278 1.21744 1.21257 1.19155 0.90984 0.84014 1.43181 0.91151 1.42332 1.05978 0.99695 1.89590 1.20921 0.92954 0.84991 0.99106 1.20916 0.90193 0.93093 0.89641 0.89196 1.45808 1.13486 1.52514 1.21061 1.17665 0.81816 0.79556 0.85304 1.90696 1.76330 1.42259 1.32312 1.21118 0.92589 0.94575 0.93486 1.21727 0.93510 1.02084 0.98838 1.18003 0.84218 0.94771 0.95261 1.41584 1.09818 1.40529 1.15257 1.22080 0.96056 1.01106 0.94284 1.21052 0.96413 1.06120 0.97590 1.21045 0.98781 1.03724 0.97488 1.21950 0.89881 1.07351 0.94869 1.22028 0.99089 1.00645 0.98541 1.22742 0.88838 0.94956 0.96131 1.67676 1.36213 1.13309 0.99896 1.22648 1.01548 0.91257 1.02788 1.22900 1.02023 1.03043 0.92735 1.23256 1.00575 0.97549 1.00929 0.93492 0.78015 0.95596 0.94520 0.74681 0.82817 0.81355 0.83882 0.83944 0.81566 0.83687 0.81031 0.87718 0.88673 0.89143 0.89851 0.86640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.26 5.43 -59.91 -0.33 -18.59 16 10 C 0.15 2.92 5.80 -4.04 -0.02 2.89 16 11 C 0.17 2.84 2.43 -67.93 -0.17 2.67 16 12 H 0.09 1.71 7.34 -51.93 -0.38 1.33 16 13 N -0.68 -11.54 4.49 -54.64 -0.25 -11.79 16 14 C 0.57 9.71 7.15 -12.18 -0.09 9.63 16 15 O -0.54 -9.83 13.34 5.36 0.07 -9.76 16 16 C 0.12 1.83 6.75 -83.04 -0.56 1.27 16 17 C -0.14 -1.84 9.04 -38.86 -0.35 -2.19 16 18 C 0.18 2.07 6.65 -83.39 -0.55 1.52 16 19 N -0.40 -4.35 2.97 -60.75 -0.18 -4.53 16 20 C -0.01 -0.10 10.77 -16.63 -0.18 -0.28 16 21 C -0.19 -1.79 10.86 -39.76 -0.43 -2.22 16 22 C -0.19 -1.69 10.86 -39.76 -0.43 -2.12 16 23 C -0.01 -0.14 10.77 -16.63 -0.18 -0.32 16 24 C -0.18 -1.77 9.53 -39.16 -0.37 -2.14 16 25 C 0.13 1.44 11.17 -17.61 -0.20 1.25 16 26 N -0.46 -6.55 9.54 -9.87 -0.09 -6.64 16 27 C -0.16 -2.32 5.36 -90.62 -0.49 -2.81 16 28 C -0.17 -2.21 10.18 -26.69 -0.27 -2.48 16 29 C -0.19 -2.56 9.73 -26.70 -0.26 -2.82 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.39 10.36 7.33 -40.82 -0.30 10.06 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.42 7.19 7.93 -40.82 -0.32 6.86 16 35 H 0.15 1.95 6.42 -52.49 -0.34 1.61 16 36 H 0.17 1.51 7.09 -52.49 -0.37 1.14 16 37 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 38 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.17 1.06 7.08 -52.49 -0.37 0.69 16 40 H 0.15 0.95 6.83 -52.49 -0.36 0.60 16 41 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.10 1.39 8.11 -51.93 -0.42 0.97 16 43 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.12 1.82 5.02 -51.93 -0.26 1.55 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -32.85 386.31 -10.10 -42.94 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -6.05 Total: 18.10 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -4.80 Total: -5.43 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -0.12 Total: -68.99 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.76 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.85 -10.10 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323093660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.278 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds