Wall clock time and date at job start Sat Apr 11 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99845 * 2 1 4 4 H 1.48501 * 109.46921 * 239.99845 * 3 2 1 5 5 H 1.48496 * 109.47035 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47379 * 120.00172 * 3 2 1 7 7 C 1.38812 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00184 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99517 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99817 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47004 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47261 * 65.00039 * 11 10 9 13 13 N 1.46506 * 109.47289 * 304.99911 * 11 10 9 14 14 C 1.34767 * 120.00003 * 154.99849 * 13 11 10 15 15 O 1.21510 * 120.00518 * 0.02562 * 14 13 11 16 16 C 1.48186 * 120.00022 * 180.02562 * 14 13 11 17 17 C 1.39114 * 119.69354 * 180.02562 * 16 14 13 18 18 C 1.39295 * 118.97271 * 179.97438 * 17 16 14 19 19 N 1.39905 * 120.82252 * 179.97438 * 18 17 16 20 20 C 1.36630 * 125.67828 * 359.69582 * 19 18 17 21 21 C 1.34812 * 108.19647 * 179.82355 * 20 19 18 22 22 C 1.40975 * 107.48376 * 0.43090 * 21 20 19 23 23 C 1.34822 * 107.47631 * 359.72702 * 22 21 20 24 24 C 1.39280 * 118.35745 * 359.97438 * 18 17 16 25 25 C 1.38337 * 119.27636 * 359.97438 * 24 18 17 26 26 N 1.31606 * 120.97565 * 359.74787 * 25 24 18 27 27 C 1.53002 * 109.47143 * 184.99902 * 11 10 9 28 28 C 1.52998 * 117.50065 * 248.74722 * 27 11 10 29 29 C 1.52994 * 117.49912 * 180.08555 * 27 11 10 30 30 H 0.97002 * 119.99669 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00295 * 0.02562 * 9 7 2 32 32 H 1.08993 * 109.47129 * 60.00010 * 10 9 7 33 33 H 1.09004 * 109.46958 * 299.99720 * 10 9 7 34 34 H 0.96996 * 119.99678 * 335.00636 * 13 11 10 35 35 H 1.07996 * 120.51343 * 359.97438 * 17 16 14 36 36 H 1.08000 * 125.90207 * 0.02562 * 20 19 18 37 37 H 1.08007 * 126.25714 * 180.15728 * 21 20 19 38 38 H 1.07993 * 126.26168 * 179.72908 * 22 21 20 39 39 H 1.07996 * 125.89747 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.36561 * 179.97438 * 24 18 17 41 41 H 1.07996 * 119.50961 * 179.97438 * 25 24 18 42 42 H 1.09003 * 115.54690 * 34.41613 * 27 11 10 43 43 H 1.08996 * 117.49552 * 359.97438 * 28 27 11 44 44 H 1.08997 * 117.49793 * 145.02169 * 28 27 11 45 45 H 1.09000 * 117.50003 * 214.98539 * 29 27 11 46 46 H 1.09003 * 117.50438 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 6 1.0640 -4.8196 0.0022 12 1 0.4974 -4.8138 -0.9289 13 7 0.1449 -4.6758 1.1340 14 6 -1.0795 -5.2366 1.0833 15 8 -1.4211 -5.8620 0.0990 16 6 -2.0094 -5.0906 2.2278 17 6 -3.2716 -5.6726 2.1688 18 6 -4.1333 -5.5264 3.2534 19 7 -5.4115 -6.0951 3.2352 20 6 -5.9470 -6.8188 2.2075 21 6 -7.1905 -7.1989 2.5635 22 6 -7.4378 -6.6847 3.8526 23 6 -6.3340 -6.0143 4.2397 24 6 -3.6911 -4.8001 4.3565 25 6 -2.4210 -4.2521 4.3407 26 7 -1.6273 -4.4119 3.3032 27 6 1.8249 -6.1411 0.1279 28 6 1.8339 -7.0695 -1.0881 29 6 1.0023 -7.4310 0.1451 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0016 32 1 2.6855 -3.7140 0.8911 33 1 2.6841 -3.7148 -0.8889 34 1 0.4176 -4.1768 1.9198 35 1 -3.5785 -6.2291 1.2957 36 1 -5.4575 -7.0496 1.2729 37 1 -7.8741 -7.7859 1.9679 38 1 -8.3453 -6.8057 4.4253 39 1 -6.2021 -5.5015 5.1810 40 1 -4.3327 -4.6662 5.2149 41 1 -2.0745 -3.6879 5.1938 42 1 2.7239 -6.1091 0.7435 43 1 1.2975 -6.7391 -1.9775 44 1 2.7387 -7.6487 -1.2723 45 1 1.3603 -8.2479 0.7718 46 1 -0.0809 -7.3384 0.0665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323093660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:14 Heat of formation + Delta-G solvation = 82.715037 kcal Electronic energy + Delta-G solvation = -28658.793847 eV Core-core repulsion = 24743.186958 eV Total energy + Delta-G solvation = -3915.606889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.80231 -41.56085 -40.34063 -38.40705 -36.63628 -35.39717 -34.83428 -33.14088 -32.63230 -30.81394 -30.06904 -29.60396 -26.28728 -25.53297 -24.83866 -23.36768 -23.08270 -22.64912 -21.41595 -21.22285 -21.01937 -19.92874 -19.17204 -18.20605 -17.60219 -16.99102 -16.89635 -16.75555 -16.64027 -16.20088 -15.85870 -15.73124 -15.32473 -15.20491 -15.01069 -14.85822 -14.57955 -14.52320 -14.23703 -13.73397 -13.31353 -13.20211 -13.08673 -13.03172 -12.76530 -12.73895 -12.50870 -12.32176 -12.12731 -11.85434 -11.63850 -11.51539 -11.19328 -11.06197 -10.96004 -10.73374 -10.47390 -10.00247 -9.44484 -9.29777 -9.02010 -7.93560 -5.23789 -0.60986 -0.27005 1.27469 1.47925 1.51077 1.56686 1.57119 1.73167 1.99884 2.01375 2.55989 2.72152 2.89782 3.13265 3.39853 3.43596 3.51129 3.55857 3.77125 3.89654 3.93828 4.09425 4.12127 4.16202 4.22865 4.32043 4.38895 4.43234 4.47434 4.54413 4.62095 4.65389 4.75520 4.80928 4.88517 5.02684 5.08966 5.23640 5.26496 5.27559 5.30266 5.32448 5.48945 5.52321 5.87863 6.09819 6.25864 6.28227 6.37188 6.70274 7.08687 7.33256 8.05801 8.30097 9.29261 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010111 B = 0.003031 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.637416 B = 9236.332721 C =11177.555841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.176 3.824 12 H 0.064 0.936 13 N -0.681 5.681 14 C 0.568 3.432 15 O -0.561 6.561 16 C 0.096 3.904 17 C -0.147 4.147 18 C 0.174 3.826 19 N -0.408 5.408 20 C -0.039 4.039 21 C -0.191 4.191 22 C -0.195 4.195 23 C -0.020 4.020 24 C -0.161 4.161 25 C 0.129 3.871 26 N -0.484 5.484 27 C -0.167 4.167 28 C -0.159 4.159 29 C -0.184 4.184 30 H 0.249 0.751 31 H 0.373 0.627 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.414 0.586 35 H 0.147 0.853 36 H 0.169 0.831 37 H 0.159 0.841 38 H 0.166 0.834 39 H 0.198 0.802 40 H 0.186 0.814 41 H 0.207 0.793 42 H 0.122 0.878 43 H 0.084 0.916 44 H 0.118 0.882 45 H 0.103 0.897 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.168 -16.682 11.768 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.071 3.929 12 H 0.082 0.918 13 N -0.329 5.329 14 C 0.353 3.647 15 O -0.441 6.441 16 C -0.042 4.042 17 C -0.170 4.170 18 C 0.072 3.928 19 N -0.081 5.081 20 C -0.164 4.164 21 C -0.214 4.214 22 C -0.219 4.219 23 C -0.144 4.144 24 C -0.183 4.183 25 C -0.031 4.031 26 N -0.197 5.197 27 C -0.186 4.186 28 C -0.196 4.196 29 C -0.221 4.221 30 H 0.058 0.942 31 H 0.204 0.796 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.251 0.749 35 H 0.165 0.835 36 H 0.187 0.813 37 H 0.176 0.824 38 H 0.183 0.817 39 H 0.215 0.785 40 H 0.203 0.797 41 H 0.223 0.777 42 H 0.140 0.860 43 H 0.102 0.898 44 H 0.136 0.864 45 H 0.122 0.878 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.114 -16.545 11.036 21.480 hybrid contribution -0.793 0.950 -0.153 1.247 sum -8.907 -15.595 10.883 21.000 Atomic orbital electron populations 1.69843 1.06728 1.25982 1.59381 1.25580 0.96304 1.01154 1.03614 0.85193 0.77117 0.79059 0.78244 1.20531 1.22484 1.20065 1.19601 0.91607 0.85030 1.41350 0.90177 1.42510 1.05565 1.00976 1.89550 1.21049 0.93286 0.83733 0.99584 1.20700 0.89591 0.93812 0.88784 0.91830 1.45782 1.13737 1.52672 1.20742 1.18035 0.81908 0.78945 0.85794 1.90668 1.76731 1.43231 1.33428 1.20813 0.92930 0.96795 0.93638 1.21689 0.93465 1.02236 0.99590 1.18135 0.84455 0.94954 0.95252 1.41708 1.09724 1.40822 1.15886 1.22330 0.96910 1.02302 0.94891 1.21399 0.96178 1.05673 0.98192 1.21428 0.99691 1.03396 0.97355 1.22570 0.89354 1.07096 0.95422 1.22445 0.98865 0.98223 0.98739 1.23387 0.89017 0.94699 0.95963 1.67621 1.37657 1.13875 1.00552 1.22558 1.01865 0.89837 1.04367 1.22993 1.02646 1.02175 0.91800 1.23200 0.99361 0.97689 1.01890 0.94204 0.79556 0.94216 0.94029 0.74920 0.83486 0.81349 0.82371 0.81686 0.78510 0.79682 0.77665 0.86013 0.89758 0.86393 0.87831 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.00 13.06 21.65 0.28 -59.71 16 2 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 3 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.24 -13.54 9.99 84.03 0.84 -12.70 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.74 -37.80 5.43 -343.46 -1.87 -39.67 16 10 C 0.15 5.93 5.80 86.38 0.50 6.43 16 11 C 0.18 6.17 2.43 44.99 0.11 6.28 16 12 H 0.06 2.56 7.34 -2.38 -0.02 2.54 16 13 N -0.68 -24.13 4.49 -445.08 -2.00 -26.13 16 14 C 0.57 20.44 7.15 86.89 0.62 21.06 16 15 O -0.56 -21.99 13.34 -3.75 -0.05 -22.04 16 16 C 0.10 3.02 6.75 41.86 0.28 3.30 16 17 C -0.15 -4.06 9.04 22.73 0.21 -3.86 16 18 C 0.17 3.90 6.65 38.36 0.26 4.16 16 19 N -0.41 -8.47 2.97 -346.10 -1.03 -9.50 16 20 C -0.04 -0.83 10.77 83.16 0.90 0.07 16 21 C -0.19 -3.46 10.86 22.15 0.24 -3.22 16 22 C -0.20 -3.11 10.86 22.16 0.24 -2.87 16 23 C -0.02 -0.32 10.77 83.16 0.90 0.58 16 24 C -0.16 -2.76 9.53 22.54 0.21 -2.54 16 25 C 0.13 2.58 11.17 84.75 0.95 3.52 16 26 N -0.48 -13.91 9.54 -185.13 -1.77 -15.67 16 27 C -0.17 -4.67 5.36 -10.80 -0.06 -4.72 16 28 C -0.16 -3.97 10.18 30.62 0.31 -3.66 16 29 C -0.18 -4.99 9.73 30.62 0.30 -4.70 16 30 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.37 20.77 7.33 -92.71 -0.68 20.09 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.41 14.85 7.93 -92.71 -0.74 14.11 16 35 H 0.15 4.10 6.42 -2.91 -0.02 4.08 16 36 H 0.17 3.29 7.09 -2.91 -0.02 3.27 16 37 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.20 1.69 7.08 -2.91 -0.02 1.67 16 40 H 0.19 1.59 6.83 -2.91 -0.02 1.57 16 41 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.12 3.02 8.11 -2.39 -0.02 3.00 16 43 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 44 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.09 3.01 5.02 -2.39 -0.01 3.00 16 Total: -1.00 -72.83 386.31 2.49 -70.34 By element: Atomic # 1 Polarization: 51.30 SS G_CDS: -0.38 Total: 50.91 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 7.27 Total: 3.33 kcal Atomic # 7 Polarization: -144.31 SS G_CDS: -6.37 Total: -150.68 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.04 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -72.83 2.49 -70.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323093660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.059 kcal (2) G-P(sol) polarization free energy of solvation -72.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds