Wall clock time and date at job start Sat Apr 11 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47361 * 90.00282 * 3 2 1 5 5 H 1.48506 * 109.46879 * 210.00165 * 3 2 1 6 6 H 1.48500 * 109.47255 * 330.00050 * 3 2 1 7 7 C 1.38811 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00004 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99858 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00033 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47131 * 174.74176 * 10 9 7 12 12 H 1.09003 * 109.86911 * 54.85963 * 11 10 9 13 13 C 1.54321 * 109.88609 * 293.68389 * 11 10 9 14 14 C 1.55158 * 102.94140 * 218.38900 * 13 11 10 15 15 C 1.54915 * 101.58415 * 35.49965 * 14 13 11 16 16 N 1.47020 * 109.88181 * 175.86866 * 11 10 9 17 17 C 1.34771 * 125.65334 * 298.33036 * 16 11 10 18 18 O 1.21519 * 120.00041 * 4.56667 * 17 16 11 19 19 C 1.48177 * 120.00321 * 184.57222 * 17 16 11 20 20 C 1.39117 * 119.69535 * 179.97438 * 19 17 16 21 21 C 1.39296 * 118.97560 * 179.97438 * 20 19 17 22 22 N 1.39904 * 120.82056 * 180.02562 * 21 20 19 23 23 C 1.36624 * 125.68188 * 359.69464 * 22 21 20 24 24 C 1.34808 * 108.19894 * 179.86422 * 23 22 21 25 25 C 1.40977 * 107.48291 * 0.39437 * 24 23 22 26 26 C 1.34817 * 107.47460 * 359.75206 * 25 24 23 27 27 C 1.39278 * 118.35505 * 0.02562 * 21 20 19 28 28 C 1.38331 * 119.28143 * 359.97438 * 27 21 20 29 29 N 1.31605 * 120.97300 * 359.72569 * 28 27 21 30 30 H 0.97009 * 119.99389 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99582 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47141 * 294.74590 * 10 9 7 33 33 H 1.09002 * 109.47229 * 54.74364 * 10 9 7 34 34 H 1.08998 * 110.72131 * 336.74888 * 13 11 10 35 35 H 1.09000 * 110.72436 * 100.02223 * 13 11 10 36 36 H 1.09000 * 111.00375 * 277.42405 * 14 13 11 37 37 H 1.09001 * 111.00336 * 153.57434 * 14 13 11 38 38 H 1.08996 * 110.36826 * 204.15353 * 15 14 13 39 39 H 1.08998 * 110.45982 * 81.87468 * 15 14 13 40 40 H 1.07999 * 120.51373 * 0.02562 * 20 19 17 41 41 H 1.08006 * 125.90084 * 0.02562 * 23 22 21 42 42 H 1.08005 * 126.26215 * 180.17062 * 24 23 22 43 43 H 1.07997 * 126.25958 * 179.78030 * 25 24 23 44 44 H 1.08008 * 125.89564 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.36326 * 179.97438 * 27 21 20 46 46 H 1.07995 * 119.51669 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5477 1.4400 -0.7001 6 1 1.4477 2.6527 -0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6110 -2.1945 -0.1316 12 1 5.9317 -1.5096 0.6535 13 6 5.9131 -1.5875 -1.5178 14 6 7.2605 -2.2538 -1.9027 15 6 7.0919 -3.6694 -1.2964 16 7 6.3623 -3.4544 -0.0334 17 6 6.3815 -4.2765 1.0344 18 8 5.6753 -4.0414 1.9949 19 6 7.2638 -5.4669 1.0372 20 6 7.2790 -6.3109 2.1430 21 6 8.1136 -7.4260 2.1295 22 7 8.1591 -8.3007 3.2204 23 6 7.4364 -8.1751 4.3731 24 6 7.7491 -9.2083 5.1807 25 6 8.7053 -9.9967 4.5088 26 6 8.9379 -9.4194 3.3129 27 6 8.9019 -7.6486 1.0030 28 6 8.8313 -6.7636 -0.0578 29 7 8.0284 -5.7216 -0.0182 30 1 -0.4850 0.8402 -0.0004 31 1 3.8645 -0.3622 0.0004 32 1 3.9207 -3.0009 0.9331 33 1 3.7802 -3.0821 -0.8394 34 1 5.1341 -1.8520 -2.2328 35 1 6.0237 -0.5053 -1.4493 36 1 8.1000 -1.7302 -1.4453 37 1 7.3764 -2.3038 -2.9854 38 1 8.0664 -4.1165 -1.1002 39 1 6.5120 -4.3042 -1.9662 40 1 6.6527 -6.1052 2.9985 41 1 6.7339 -7.3860 4.5974 42 1 7.3441 -9.3956 6.1642 43 1 9.1667 -10.8984 4.8834 44 1 9.6220 -9.7790 2.5584 45 1 9.5610 -8.5030 0.9581 46 1 9.4405 -6.9328 -0.9333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324252996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:29 Heat of formation + Delta-G solvation = 95.856600 kcal Electronic energy + Delta-G solvation = -28653.825748 eV Core-core repulsion = 24738.788720 eV Total energy + Delta-G solvation = -3915.037028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.18232 -40.76559 -39.44461 -37.44808 -34.82105 -34.41719 -32.29575 -31.49785 -31.36118 -30.15312 -29.39246 -29.00206 -25.60546 -24.93449 -24.20266 -22.93897 -21.83939 -21.39881 -20.71596 -20.44071 -19.66696 -18.59248 -17.63419 -17.13033 -16.50446 -16.40522 -15.93898 -15.66578 -15.28629 -14.90208 -14.60057 -14.42062 -14.32784 -13.99515 -13.83131 -13.68478 -13.47682 -13.04377 -12.95451 -12.74848 -12.61008 -12.52158 -12.42162 -12.20228 -11.63619 -11.31437 -11.15673 -10.97908 -10.89335 -10.63763 -10.47561 -10.23643 -10.11602 -9.75878 -9.66735 -9.54404 -8.82430 -8.81289 -8.70145 -8.48924 -7.16755 -5.71113 -3.06344 0.11235 0.40582 1.94080 2.20791 2.58500 2.64033 2.84350 3.39766 3.43742 3.48343 3.50651 3.72962 4.01464 4.13727 4.45236 4.49044 4.62111 4.63720 4.68162 4.79147 4.87744 4.94525 5.05903 5.07936 5.23140 5.24185 5.35413 5.38061 5.48136 5.58135 5.65822 5.74782 5.81169 5.82472 5.84025 5.93261 5.99325 6.07506 6.10756 6.33870 6.45210 6.45288 6.68953 6.73425 6.88461 6.94357 7.24245 7.54313 8.03595 8.12064 8.47367 9.26283 9.98305 10.18458 11.47487 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.002493 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.596865 B =11229.159827 C =12571.894688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.089 0.911 9 N -0.751 5.751 10 C 0.149 3.851 11 C 0.126 3.874 12 H 0.077 0.923 13 C -0.124 4.124 14 C -0.138 4.138 15 C 0.097 3.903 16 N -0.588 5.588 17 C 0.577 3.423 18 O -0.518 6.518 19 C 0.124 3.876 20 C -0.137 4.137 21 C 0.185 3.815 22 N -0.401 5.401 23 C -0.009 4.009 24 C -0.185 4.185 25 C -0.183 4.183 26 C -0.017 4.017 27 C -0.182 4.182 28 C 0.127 3.873 29 N -0.464 5.464 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.042 0.958 33 H 0.030 0.970 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.156 0.844 41 H 0.171 0.829 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.167 0.833 45 H 0.146 0.854 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.008 -18.848 0.645 32.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.107 0.893 9 N -0.398 5.398 10 C 0.021 3.979 11 C 0.023 3.977 12 H 0.095 0.905 13 C -0.162 4.162 14 C -0.176 4.176 15 C -0.026 4.026 16 N -0.320 5.320 17 C 0.363 3.637 18 O -0.393 6.393 19 C -0.014 4.014 20 C -0.160 4.160 21 C 0.083 3.917 22 N -0.075 5.075 23 C -0.135 4.135 24 C -0.209 4.209 25 C -0.207 4.207 26 C -0.142 4.142 27 C -0.204 4.204 28 C -0.032 4.032 29 N -0.177 5.177 30 H 0.069 0.931 31 H 0.192 0.808 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.174 0.826 41 H 0.188 0.812 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.185 0.815 45 H 0.164 0.836 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 25.306 -18.096 0.322 31.112 hybrid contribution 0.546 0.524 0.721 1.045 sum 25.852 -17.572 1.043 31.276 Atomic orbital electron populations 1.69708 1.05070 1.25709 1.57886 1.24659 0.95251 0.97142 1.02242 0.86534 0.79142 0.84986 0.77795 1.21096 1.20330 1.21762 1.19039 0.80439 0.94750 1.42572 0.89287 1.42548 1.04020 1.01842 1.91348 1.20961 0.87445 0.89694 0.99785 1.21943 0.93465 0.84227 0.98104 0.90532 1.22706 0.97250 1.00467 0.95780 1.22868 0.97913 0.95712 1.01111 1.22780 0.98771 0.96852 0.84173 1.48255 1.46672 1.22440 1.14629 1.17359 0.82191 0.81700 0.82492 1.90865 1.41458 1.72652 1.34316 1.21062 0.95244 0.95211 0.89860 1.21761 0.99780 0.93283 1.01182 1.18022 0.95916 0.90211 0.87509 1.41590 1.33703 1.19816 1.12364 1.22129 1.01748 1.03235 0.86344 1.21093 1.02288 0.96594 1.00948 1.21076 1.02536 1.02168 0.94959 1.21939 1.01299 0.89954 1.01014 1.22014 1.01706 1.03109 0.93541 1.22798 0.94516 0.88595 0.97302 1.67911 1.05695 1.18790 1.25280 0.93120 0.80769 0.93985 0.95220 0.89613 0.90175 0.91022 0.89980 0.87196 0.91502 0.82594 0.81198 0.83731 0.83845 0.81543 0.83648 0.81038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.17 13.97 55.49 0.78 -29.40 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 22.58 27.73 -169.99 -4.71 17.86 16 4 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 6 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 7 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 9 N -0.75 -18.77 5.20 -59.91 -0.31 -19.08 16 10 C 0.15 3.20 5.64 -4.04 -0.02 3.18 16 11 C 0.13 2.13 2.95 -66.96 -0.20 1.93 16 12 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 13 C -0.12 -1.74 6.19 -24.90 -0.15 -1.90 16 14 C -0.14 -1.44 7.09 -24.58 -0.17 -1.62 16 15 C 0.10 1.10 6.12 -2.52 -0.02 1.09 16 16 N -0.59 -8.81 3.06 -163.99 -0.50 -9.32 16 17 C 0.58 9.20 7.66 -12.18 -0.09 9.11 16 18 O -0.52 -10.05 15.14 5.35 0.08 -9.97 16 19 C 0.12 1.56 6.72 -83.04 -0.56 1.00 16 20 C -0.14 -1.56 9.04 -38.86 -0.35 -1.91 16 21 C 0.18 1.73 6.65 -83.39 -0.55 1.18 16 22 N -0.40 -3.71 2.97 -60.74 -0.18 -3.90 16 23 C -0.01 -0.09 10.77 -16.63 -0.18 -0.27 16 24 C -0.19 -1.59 10.86 -39.76 -0.43 -2.02 16 25 C -0.18 -1.43 10.86 -39.76 -0.43 -1.86 16 26 C -0.02 -0.13 10.77 -16.63 -0.18 -0.31 16 27 C -0.18 -1.24 9.53 -39.16 -0.37 -1.61 16 28 C 0.13 0.87 11.17 -17.61 -0.20 0.67 16 29 N -0.46 -4.69 6.53 -9.87 -0.06 -4.75 16 30 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 31 H 0.36 8.61 5.45 -40.82 -0.22 8.39 16 32 H 0.04 1.01 6.59 -51.93 -0.34 0.67 16 33 H 0.03 0.65 8.04 -51.93 -0.42 0.23 16 34 H 0.09 1.30 7.78 -51.93 -0.40 0.90 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.11 1.11 5.60 -51.93 -0.29 0.82 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.16 1.81 6.42 -52.49 -0.34 1.47 16 41 H 0.17 1.40 7.09 -52.48 -0.37 1.02 16 42 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.17 0.75 7.08 -52.48 -0.37 0.38 16 45 H 0.15 0.56 6.83 -52.49 -0.36 0.20 16 46 H 0.17 0.55 8.06 -52.49 -0.42 0.12 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -36.35 375.45 -9.52 -45.86 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.09 Total: 7.57 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -4.17 Total: -0.55 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -0.28 Total: -66.44 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.86 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.35 -9.52 -45.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324252996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.720 kcal (2) G-P(sol) polarization free energy of solvation -36.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds