Wall clock time and date at job start Sat Apr 11 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99674 * 2 1 4 4 H 1.48498 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47346 * 300.00285 * 3 2 1 6 6 H 1.48502 * 109.46920 * 60.00525 * 3 2 1 7 7 C 1.38807 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00143 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00201 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47442 * 185.01344 * 10 9 7 12 12 H 1.08996 * 109.99607 * 306.66269 * 11 10 9 13 13 C 1.54314 * 109.77182 * 67.81514 * 11 10 9 14 14 C 1.55155 * 102.86345 * 141.88927 * 13 11 10 15 15 C 1.54907 * 101.58088 * 324.30025 * 14 13 11 16 16 N 1.47019 * 109.88596 * 185.56486 * 11 10 9 17 17 C 1.34778 * 125.64667 * 61.67719 * 16 11 10 18 18 O 1.21507 * 120.00017 * 355.26146 * 17 16 11 19 19 C 1.48184 * 119.99616 * 175.26569 * 17 16 11 20 20 C 1.39115 * 119.68985 * 179.97438 * 19 17 16 21 21 C 1.39287 * 118.97414 * 179.97438 * 20 19 17 22 22 N 1.39913 * 120.82596 * 180.02562 * 21 20 19 23 23 C 1.36631 * 125.67368 * 359.69411 * 22 21 20 24 24 C 1.34809 * 108.19587 * 179.83295 * 23 22 21 25 25 C 1.40973 * 107.47895 * 0.42373 * 24 23 22 26 26 C 1.34811 * 107.48184 * 359.73929 * 25 24 23 27 27 C 1.39277 * 118.35680 * 0.02562 * 21 20 19 28 28 C 1.38331 * 119.27919 * 359.97438 * 27 21 20 29 29 N 1.31605 * 120.97216 * 359.97438 * 28 27 21 30 30 H 0.97002 * 120.00322 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00117 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47213 * 65.01120 * 10 9 7 33 33 H 1.09006 * 109.47290 * 305.01481 * 10 9 7 34 34 H 1.09005 * 110.92651 * 23.47117 * 13 11 10 35 35 H 1.09010 * 110.59240 * 260.14790 * 13 11 10 36 36 H 1.08997 * 111.00355 * 206.22699 * 14 13 11 37 37 H 1.08998 * 111.00371 * 82.37681 * 14 13 11 38 38 H 1.08995 * 110.36974 * 278.17349 * 15 14 13 39 39 H 1.08997 * 110.36707 * 155.84789 * 15 14 13 40 40 H 1.08008 * 120.51421 * 0.27179 * 20 19 17 41 41 H 1.08000 * 125.89866 * 0.02562 * 23 22 21 42 42 H 1.08006 * 126.26266 * 180.16213 * 24 23 22 43 43 H 1.08004 * 126.25638 * 179.73096 * 25 24 23 44 44 H 1.07999 * 125.89984 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.36650 * 180.02562 * 27 21 20 46 46 H 1.07995 * 119.51812 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 6 1.0688 -4.8169 -0.1298 12 1 0.3014 -4.7383 0.6402 13 6 0.4168 -4.7961 -1.5283 14 6 0.3166 -6.3027 -1.8852 15 6 1.6146 -6.8599 -1.2493 16 7 1.7797 -6.0970 0.0015 17 6 2.4641 -6.5076 1.0875 18 8 2.6027 -5.7613 2.0363 19 6 3.0477 -7.8692 1.1244 20 6 3.7534 -8.2862 2.2484 21 6 4.2952 -9.5693 2.2673 22 7 5.0115 -10.0288 3.3778 23 6 5.2608 -9.3153 4.5160 24 6 5.9738 -10.0946 5.3537 25 6 6.1817 -11.3305 4.7083 26 6 5.5832 -11.2633 3.5022 27 6 4.1062 -10.3836 1.1533 28 6 3.3923 -9.8971 0.0729 29 7 2.8913 -8.6802 0.0847 30 1 -0.4851 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0016 32 1 2.6158 -3.7551 0.9286 33 1 2.7506 -3.6758 -0.8444 34 1 1.0488 -4.2712 -2.2448 35 1 -0.5740 -4.3438 -1.4827 36 1 0.3166 -6.4492 -2.9652 37 1 -0.5657 -6.7538 -1.4313 38 1 2.4640 -6.6914 -1.9112 39 1 1.5055 -7.9227 -1.0337 40 1 3.8752 -7.6270 3.0952 41 1 4.9393 -8.3031 4.7121 42 1 6.3255 -9.8205 6.3374 43 1 6.7219 -12.1765 5.1071 44 1 5.5593 -12.0498 2.7624 45 1 4.5119 -11.3844 1.1334 46 1 3.2438 -10.5251 -0.7930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324252997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:38 Heat of formation + Delta-G solvation = 91.574232 kcal Electronic energy + Delta-G solvation = -28583.848342 eV Core-core repulsion = 24668.625616 eV Total energy + Delta-G solvation = -3915.222726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16056 -40.71294 -39.36814 -37.35062 -34.70815 -34.30365 -32.25188 -31.37404 -31.24384 -30.11232 -29.34385 -28.59503 -25.50333 -24.77726 -24.17176 -23.01153 -22.00315 -21.36606 -20.69013 -20.38819 -19.57190 -18.46981 -17.41735 -16.80983 -16.45171 -16.37363 -15.87221 -15.62401 -15.25480 -14.84101 -14.58316 -14.41578 -14.30741 -13.93813 -13.64943 -13.59798 -13.27588 -13.16906 -12.75220 -12.74886 -12.59696 -12.50454 -12.35533 -12.04661 -11.44760 -11.19606 -10.95107 -10.89397 -10.81276 -10.52769 -10.38297 -10.15930 -9.97907 -9.72721 -9.70215 -9.57211 -8.79544 -8.79297 -8.68651 -8.39491 -6.84470 -5.70601 -2.98468 0.14835 0.43698 1.96589 2.23211 2.59885 2.69149 2.92301 3.47770 3.53387 3.55339 3.55966 3.78026 4.05198 4.16549 4.48254 4.52046 4.65767 4.67959 4.79259 4.82515 4.92474 5.01806 5.09835 5.17728 5.25638 5.28325 5.38152 5.51712 5.60685 5.64647 5.80304 5.82488 5.85495 5.89125 6.02081 6.05146 6.14490 6.22755 6.25389 6.46809 6.48473 6.59325 6.70676 6.85092 6.90328 7.05564 7.28691 7.63520 7.77312 8.18192 8.48375 9.59381 10.16231 10.52032 11.52577 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014488 B = 0.002462 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.133963 B =11371.460218 C =12973.015928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.232 4.232 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.145 3.855 11 C 0.129 3.871 12 H 0.078 0.922 13 C -0.120 4.120 14 C -0.139 4.139 15 C 0.097 3.903 16 N -0.587 5.587 17 C 0.576 3.424 18 O -0.519 6.519 19 C 0.125 3.875 20 C -0.138 4.138 21 C 0.184 3.816 22 N -0.401 5.401 23 C -0.009 4.009 24 C -0.186 4.186 25 C -0.184 4.184 26 C -0.017 4.017 27 C -0.182 4.182 28 C 0.127 3.873 29 N -0.464 5.464 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.035 0.965 33 H 0.021 0.979 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.156 0.844 41 H 0.171 0.829 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.167 0.833 45 H 0.146 0.854 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.557 -29.139 0.965 30.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.363 4.363 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.017 3.983 11 C 0.026 3.974 12 H 0.096 0.904 13 C -0.158 4.158 14 C -0.177 4.177 15 C -0.026 4.026 16 N -0.319 5.319 17 C 0.361 3.639 18 O -0.394 6.394 19 C -0.013 4.013 20 C -0.161 4.161 21 C 0.083 3.917 22 N -0.074 5.074 23 C -0.135 4.135 24 C -0.210 4.210 25 C -0.208 4.208 26 C -0.142 4.142 27 C -0.204 4.204 28 C -0.032 4.032 29 N -0.176 5.176 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.174 0.826 41 H 0.188 0.812 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.184 0.816 45 H 0.163 0.837 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.202 -28.209 0.623 29.120 hybrid contribution 0.716 0.571 0.743 1.179 sum 7.918 -27.638 1.366 28.782 Atomic orbital electron populations 1.69667 1.05046 1.25421 1.58251 1.24718 0.95549 0.97595 1.03287 0.86107 0.78797 0.84146 0.77128 1.20609 1.21926 1.21883 1.19257 0.91035 0.84000 1.42011 0.91237 1.42205 1.05740 0.99702 1.89622 1.20985 0.93359 0.85059 0.98926 1.21926 0.94595 0.82829 0.98043 0.90394 1.22668 1.02020 0.95587 0.95495 1.22877 0.97535 0.96387 1.00909 1.22771 0.97186 0.98186 0.84456 1.48299 1.50349 1.19086 1.14214 1.17352 0.79190 0.84886 0.82450 1.90857 1.58840 1.54105 1.35592 1.21106 0.95665 0.94682 0.89848 1.21761 0.98621 0.94732 1.00952 1.18023 0.93056 0.93452 0.87185 1.41594 1.40696 1.12890 1.12264 1.22129 1.05449 0.99355 0.86518 1.21088 1.04471 0.94674 1.00732 1.21070 1.05459 0.99304 0.94949 1.21933 1.03367 0.88134 1.00759 1.22010 1.03369 1.01490 0.93567 1.22803 0.91640 0.91717 0.97070 1.67919 1.19028 1.04504 1.26174 0.93643 0.78336 0.94769 0.96123 0.89911 0.89822 0.90115 0.91034 0.91672 0.87288 0.82621 0.81210 0.83752 0.83863 0.81552 0.83677 0.81055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 7 C -0.23 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.73 -19.35 5.42 -59.91 -0.32 -19.67 16 10 C 0.14 3.25 5.66 -4.04 -0.02 3.23 16 11 C 0.13 2.32 2.94 -66.96 -0.20 2.12 16 12 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 13 C -0.12 -1.81 6.24 -24.90 -0.16 -1.97 16 14 C -0.14 -1.57 7.08 -24.58 -0.17 -1.74 16 15 C 0.10 1.17 6.12 -2.53 -0.02 1.15 16 16 N -0.59 -9.25 3.07 -164.00 -0.50 -9.75 16 17 C 0.58 9.55 7.66 -12.17 -0.09 9.46 16 18 O -0.52 -10.42 15.12 5.36 0.08 -10.34 16 19 C 0.13 1.63 6.72 -83.05 -0.56 1.07 16 20 C -0.14 -1.62 9.04 -38.87 -0.35 -1.97 16 21 C 0.18 1.78 6.65 -83.39 -0.55 1.22 16 22 N -0.40 -3.80 2.97 -60.75 -0.18 -3.98 16 23 C -0.01 -0.09 10.77 -16.63 -0.18 -0.27 16 24 C -0.19 -1.62 10.86 -39.76 -0.43 -2.05 16 25 C -0.18 -1.46 10.86 -39.76 -0.43 -1.89 16 26 C -0.02 -0.13 10.77 -16.63 -0.18 -0.31 16 27 C -0.18 -1.29 9.53 -39.16 -0.37 -1.66 16 28 C 0.13 0.91 11.17 -17.61 -0.20 0.71 16 29 N -0.46 -4.88 6.53 -9.87 -0.06 -4.95 16 30 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.38 10.48 7.62 -40.82 -0.31 10.17 16 32 H 0.03 0.85 6.55 -51.93 -0.34 0.51 16 33 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 34 H 0.08 1.34 7.76 -51.93 -0.40 0.94 16 35 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.11 1.17 5.59 -51.93 -0.29 0.88 16 40 H 0.16 1.86 6.42 -52.48 -0.34 1.53 16 41 H 0.17 1.43 7.09 -52.49 -0.37 1.06 16 42 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 43 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.17 0.78 7.08 -52.49 -0.37 0.41 16 45 H 0.15 0.59 6.83 -52.49 -0.36 0.24 16 46 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 378.57 15.07 5.70 5.70 Total: -1.00 -35.48 378.57 -9.87 -45.35 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.13 Total: 8.04 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -4.16 Total: -0.40 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.35 Total: -66.48 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.48 -9.87 -45.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324252997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.929 kcal (2) G-P(sol) polarization free energy of solvation -35.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds