Wall clock time and date at job start Sat Apr 11 2020 06:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00011 * 2 1 4 4 H 1.48496 * 109.47233 * 270.00010 * 3 2 1 5 5 H 1.48498 * 109.47042 * 30.00121 * 3 2 1 6 6 H 1.48499 * 109.47126 * 149.99956 * 3 2 1 7 7 C 1.38812 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99611 * 185.04879 * 7 2 1 9 9 N 1.36937 * 120.00238 * 5.04417 * 7 2 1 10 10 C 1.46498 * 120.00136 * 184.95097 * 9 7 2 11 11 C 1.53004 * 109.47321 * 171.90366 * 10 9 7 12 12 H 1.08997 * 109.99115 * 48.74213 * 11 10 9 13 13 C 1.54323 * 109.88046 * 169.83483 * 11 10 9 14 14 C 1.55157 * 102.93779 * 141.61316 * 13 11 10 15 15 C 1.55130 * 101.48942 * 324.33073 * 14 13 11 16 16 N 1.47015 * 109.88286 * 287.64541 * 11 10 9 17 17 C 1.34784 * 125.64962 * 61.60118 * 16 11 10 18 18 O 1.21581 * 119.99971 * 4.47539 * 17 16 11 19 19 C 1.47603 * 120.00004 * 184.47120 * 17 16 11 20 20 C 1.39632 * 120.19036 * 55.31049 * 19 17 16 21 21 C 1.37844 * 119.91796 * 180.25594 * 20 19 17 22 22 C 1.38519 * 120.30748 * 359.46256 * 21 20 19 23 23 C 1.38082 * 120.39041 * 0.52042 * 22 21 20 24 24 C 1.38756 * 120.07159 * 359.76163 * 23 22 21 25 25 N 1.39706 * 120.15329 * 180.02562 * 24 23 22 26 26 C 1.35856 * 126.10400 * 7.57914 * 25 24 23 27 27 C 1.35277 * 107.60940 * 179.83840 * 26 25 24 28 28 C 1.39958 * 107.97214 * 0.42503 * 27 26 25 29 29 N 1.30819 * 108.36874 * 359.73683 * 28 27 26 30 30 H 0.96999 * 120.00388 * 5.00321 * 1 2 3 31 31 H 0.96997 * 119.99925 * 4.95856 * 9 7 2 32 32 H 1.09004 * 109.47246 * 51.90821 * 10 9 7 33 33 H 1.08999 * 109.47902 * 291.90906 * 10 9 7 34 34 H 1.09004 * 110.72012 * 259.97055 * 13 11 10 35 35 H 1.08988 * 110.72461 * 23.25288 * 13 11 10 36 36 H 1.09002 * 111.00737 * 82.57077 * 14 13 11 37 37 H 1.09004 * 111.00254 * 206.38181 * 14 13 11 38 38 H 1.08999 * 110.49656 * 278.45746 * 15 14 13 39 39 H 1.08995 * 110.34322 * 156.05610 * 15 14 13 40 40 H 1.08005 * 120.04366 * 359.97438 * 20 19 17 41 41 H 1.08006 * 119.84888 * 179.69909 * 21 20 19 42 42 H 1.07998 * 119.80872 * 180.25731 * 22 21 20 43 43 H 1.08002 * 119.96624 * 179.74224 * 23 22 21 44 44 H 1.08000 * 126.19119 * 359.97438 * 26 25 24 45 45 H 1.08003 * 126.01273 * 180.19655 * 27 26 25 46 46 H 1.08007 * 125.81446 * 179.75498 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2040 0.0818 9 7 1.3295 -2.3857 -0.1053 10 6 2.0496 -3.6569 0.0030 11 6 1.0447 -4.8096 0.0544 12 1 0.3126 -4.7017 -0.7459 13 6 1.7836 -6.1568 -0.0884 14 6 1.0158 -7.0800 0.8942 15 6 0.6686 -6.0923 2.0389 16 7 0.3634 -4.8212 1.3571 17 6 -0.4078 -3.8314 1.8492 18 8 -0.6538 -2.8559 1.1665 19 6 -0.9536 -3.9317 3.2169 20 6 -0.0980 -4.1361 4.3012 21 6 -0.6143 -4.2342 5.5755 22 6 -1.9784 -4.1198 5.7878 23 6 -2.8361 -3.9172 4.7248 24 6 -2.3342 -3.8218 3.4347 25 7 -3.2005 -3.6163 2.3581 26 6 -4.5299 -3.3489 2.4401 27 6 -4.9990 -3.2151 1.1783 28 6 -3.9304 -3.4152 0.2968 29 7 -2.8545 -3.6553 1.0011 30 1 -0.4851 0.8368 -0.0733 31 1 0.3706 -2.3824 -0.2514 32 1 2.6503 -3.6579 0.9125 33 1 2.7005 -3.7808 -0.8625 34 1 1.7079 -6.5320 -1.1090 35 1 2.8270 -6.0581 0.2109 36 1 0.1134 -7.4792 0.4310 37 1 1.6560 -7.8850 1.2551 38 1 1.5201 -5.9689 2.7079 39 1 -0.2019 -6.4444 2.5922 40 1 0.9667 -4.2217 4.1412 41 1 0.0481 -4.3971 6.4129 42 1 -2.3738 -4.1938 6.7900 43 1 -3.8989 -3.8332 4.8977 44 1 -5.1072 -3.2573 3.3482 45 1 -6.0194 -2.9964 0.9000 46 1 -3.9849 -3.3776 -0.7812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499927522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:23 Heat of formation + Delta-G solvation = 133.712831 kcal Electronic energy + Delta-G solvation = -30930.686468 eV Core-core repulsion = 27017.291009 eV Total energy + Delta-G solvation = -3913.395459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.28619 -39.76468 -38.54452 -36.51600 -34.11477 -33.38986 -31.88619 -31.06220 -30.55102 -29.82874 -28.83806 -28.53296 -24.90962 -24.14461 -23.36992 -22.65370 -21.54510 -21.08730 -20.42694 -20.20245 -18.76568 -17.87030 -17.22551 -16.41785 -16.13599 -15.51439 -15.12446 -15.00166 -14.79746 -14.46206 -14.04753 -13.76519 -13.57125 -13.38324 -13.30674 -13.03499 -12.83201 -12.80263 -12.56886 -12.49775 -12.10533 -11.96018 -11.49944 -11.40873 -11.24300 -11.07359 -10.99736 -10.63732 -10.48949 -10.38951 -10.24657 -10.04921 -9.84633 -9.44032 -9.05502 -8.91366 -8.61900 -8.55016 -7.89407 -7.79649 -6.48534 -5.35080 -2.66252 0.84822 1.13706 2.37643 2.61960 3.10411 3.48113 3.54242 3.59033 3.63140 3.65400 3.93414 4.53645 4.66430 4.74998 4.80731 4.86698 4.91118 4.96192 5.08631 5.11361 5.27232 5.36526 5.47542 5.52251 5.59437 5.71554 5.75358 5.82061 5.83049 5.86081 5.88155 5.99734 6.06557 6.14094 6.19280 6.24720 6.27908 6.36476 6.38130 6.61851 6.66581 6.77191 6.87895 6.96821 7.18505 7.33737 7.94526 7.95973 8.24967 8.75523 9.17964 9.91753 10.59578 11.02428 11.81772 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008547 B = 0.005228 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3275.314304 B = 5354.207293 C = 6344.940797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.009 4.009 3 Si 0.890 3.110 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.059 0.941 9 N -0.722 5.722 10 C 0.145 3.855 11 C 0.136 3.864 12 H 0.071 0.929 13 C -0.124 4.124 14 C -0.131 4.131 15 C 0.105 3.895 16 N -0.615 5.615 17 C 0.561 3.439 18 O -0.413 6.413 19 C -0.109 4.109 20 C -0.065 4.065 21 C -0.138 4.138 22 C -0.083 4.083 23 C -0.152 4.152 24 C 0.203 3.797 25 N -0.329 5.329 26 C 0.038 3.962 27 C -0.254 4.254 28 C 0.046 3.954 29 N -0.228 5.228 30 H 0.245 0.755 31 H 0.402 0.598 32 H 0.017 0.983 33 H 0.014 0.986 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.172 0.828 45 H 0.150 0.850 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.254 -17.429 10.161 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.206 4.206 3 Si 0.722 3.278 4 H -0.221 1.221 5 H -0.222 1.222 6 H -0.212 1.212 7 C -0.371 4.371 8 H 0.077 0.923 9 N -0.375 5.375 10 C 0.016 3.984 11 C 0.033 3.967 12 H 0.089 0.911 13 C -0.162 4.162 14 C -0.169 4.169 15 C -0.019 4.019 16 N -0.353 5.353 17 C 0.345 3.655 18 O -0.278 6.278 19 C -0.115 4.115 20 C -0.084 4.084 21 C -0.157 4.157 22 C -0.102 4.102 23 C -0.173 4.173 24 C 0.108 3.892 25 N -0.105 5.105 26 C -0.102 4.102 27 C -0.282 4.282 28 C -0.143 4.143 29 N -0.044 5.044 30 H 0.055 0.945 31 H 0.246 0.754 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.189 0.811 45 H 0.167 0.833 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.142 -16.883 9.892 20.509 hybrid contribution -0.609 1.370 0.116 1.503 sum -6.751 -15.513 10.008 19.657 Atomic orbital electron populations 1.69859 1.04437 1.24387 1.56343 1.24698 0.95293 0.96903 1.03733 0.86441 0.78681 0.85415 0.77246 1.22127 1.22200 1.21173 1.19135 0.90502 0.84987 1.42449 0.92347 1.43027 1.09423 0.98695 1.86391 1.21011 0.93197 0.86941 0.97297 1.21768 0.94374 0.94927 0.85635 0.91105 1.22623 0.99600 0.94119 0.99904 1.22769 1.00553 0.97172 0.96401 1.22202 0.99811 0.84625 0.95278 1.48218 1.50896 1.17168 1.19066 1.17344 0.79551 0.83056 0.85559 1.90930 1.52539 1.27959 1.56368 1.19842 0.91429 1.04270 0.95927 1.21209 0.99764 0.96044 0.91405 1.21083 0.95394 1.02385 0.96860 1.20989 0.93193 0.97809 0.98238 1.20695 1.00612 1.05900 0.90104 1.17409 0.88106 0.98497 0.85142 1.45983 1.05748 1.53805 1.04957 1.22616 0.84651 1.02786 1.00190 1.21543 1.00990 1.14166 0.91512 1.24128 0.90034 0.99347 1.00758 1.78032 1.21175 1.20760 0.84472 0.94468 0.75395 0.96555 0.96893 0.90432 0.90548 0.90965 0.90452 0.92237 0.91753 0.84872 0.85219 0.85057 0.85112 0.81091 0.83275 0.79858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -30.05 13.08 55.49 0.73 -29.33 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.89 24.30 29.56 -169.99 -5.02 19.27 16 4 H -0.29 -7.91 7.11 56.52 0.40 -7.51 16 5 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16 6 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 7 C -0.24 -7.39 9.98 -15.06 -0.15 -7.54 16 8 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 9 N -0.72 -20.54 4.35 -59.91 -0.26 -20.80 16 10 C 0.14 3.26 5.63 -4.04 -0.02 3.24 16 11 C 0.14 2.50 3.07 -66.95 -0.21 2.30 16 12 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 13 C -0.12 -1.60 6.46 -24.90 -0.16 -1.76 16 14 C -0.13 -1.43 7.10 -24.46 -0.17 -1.60 16 15 C 0.10 1.37 5.77 -2.41 -0.01 1.36 16 16 N -0.61 -11.08 3.06 -164.07 -0.50 -11.58 16 17 C 0.56 11.93 5.60 -12.44 -0.07 11.86 16 18 O -0.41 -10.94 10.95 5.29 0.06 -10.88 16 19 C -0.11 -1.96 4.94 -104.82 -0.52 -2.47 16 20 C -0.07 -0.94 8.76 -39.21 -0.34 -1.28 16 21 C -0.14 -1.54 10.02 -39.62 -0.40 -1.94 16 22 C -0.08 -0.86 10.03 -39.53 -0.40 -1.26 16 23 C -0.15 -1.87 9.45 -39.45 -0.37 -2.24 16 24 C 0.20 3.37 6.68 -83.34 -0.56 2.82 16 25 N -0.33 -5.81 3.77 -10.37 -0.04 -5.85 16 26 C 0.04 0.53 10.81 -16.82 -0.18 0.35 16 27 C -0.25 -3.56 10.80 -39.99 -0.43 -3.99 16 28 C 0.05 0.79 12.02 -17.34 -0.21 0.58 16 29 N -0.23 -4.60 8.31 30.64 0.25 -4.35 16 30 H 0.25 7.96 8.32 -40.82 -0.34 7.62 16 31 H 0.40 12.28 4.74 -40.83 -0.19 12.08 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.01 0.30 8.12 -51.93 -0.42 -0.12 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.94 7.85 -51.94 -0.41 0.53 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.71 7.89 -51.93 -0.41 0.30 16 39 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 40 H 0.13 1.84 7.71 -52.48 -0.40 1.43 16 41 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 1.22 6.80 -52.49 -0.36 0.86 16 44 H 0.17 1.66 7.12 -52.49 -0.37 1.28 16 45 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 46 H 0.18 2.66 8.06 -52.48 -0.42 2.24 16 LS Contribution 374.09 15.07 5.64 5.64 Total: -1.00 -40.21 374.09 -9.77 -49.98 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.32 Total: 9.88 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -4.30 Total: -1.99 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: 0.18 Total: -71.90 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.06 Total: -10.88 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.02 Total: 19.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -40.21 -9.77 -49.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499927522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.694 kcal (2) G-P(sol) polarization free energy of solvation -40.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds