Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00011 * 2 1 4 4 H 1.48496 * 109.47233 * 270.00010 * 3 2 1 5 5 H 1.48498 * 109.47042 * 30.00121 * 3 2 1 6 6 H 1.48499 * 109.47126 * 149.99956 * 3 2 1 7 7 C 1.38812 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99611 * 185.04879 * 7 2 1 9 9 N 1.36937 * 120.00238 * 5.04417 * 7 2 1 10 10 C 1.46498 * 120.00136 * 184.95097 * 9 7 2 11 11 C 1.53004 * 109.47321 * 171.90366 * 10 9 7 12 12 H 1.08997 * 109.99115 * 48.74213 * 11 10 9 13 13 C 1.54323 * 109.88046 * 169.83483 * 11 10 9 14 14 C 1.55157 * 102.93779 * 141.61316 * 13 11 10 15 15 C 1.55130 * 101.48942 * 324.33073 * 14 13 11 16 16 N 1.47015 * 109.88286 * 287.64541 * 11 10 9 17 17 C 1.34784 * 125.64962 * 61.60118 * 16 11 10 18 18 O 1.21581 * 119.99971 * 4.47539 * 17 16 11 19 19 C 1.47603 * 120.00004 * 184.47120 * 17 16 11 20 20 C 1.39632 * 120.19036 * 55.31049 * 19 17 16 21 21 C 1.37844 * 119.91796 * 180.25594 * 20 19 17 22 22 C 1.38519 * 120.30748 * 359.46256 * 21 20 19 23 23 C 1.38082 * 120.39041 * 0.52042 * 22 21 20 24 24 C 1.38756 * 120.07159 * 359.76163 * 23 22 21 25 25 N 1.39706 * 120.15329 * 180.02562 * 24 23 22 26 26 C 1.35856 * 126.10400 * 7.57914 * 25 24 23 27 27 C 1.35277 * 107.60940 * 179.83840 * 26 25 24 28 28 C 1.39958 * 107.97214 * 0.42503 * 27 26 25 29 29 N 1.30819 * 108.36874 * 359.73683 * 28 27 26 30 30 H 0.96999 * 120.00388 * 5.00321 * 1 2 3 31 31 H 0.96997 * 119.99925 * 4.95856 * 9 7 2 32 32 H 1.09004 * 109.47246 * 51.90821 * 10 9 7 33 33 H 1.08999 * 109.47902 * 291.90906 * 10 9 7 34 34 H 1.09004 * 110.72012 * 259.97055 * 13 11 10 35 35 H 1.08988 * 110.72461 * 23.25288 * 13 11 10 36 36 H 1.09002 * 111.00737 * 82.57077 * 14 13 11 37 37 H 1.09004 * 111.00254 * 206.38181 * 14 13 11 38 38 H 1.08999 * 110.49656 * 278.45746 * 15 14 13 39 39 H 1.08995 * 110.34322 * 156.05610 * 15 14 13 40 40 H 1.08005 * 120.04366 * 359.97438 * 20 19 17 41 41 H 1.08006 * 119.84888 * 179.69909 * 21 20 19 42 42 H 1.07998 * 119.80872 * 180.25731 * 22 21 20 43 43 H 1.08002 * 119.96624 * 179.74224 * 23 22 21 44 44 H 1.08000 * 126.19119 * 359.97438 * 26 25 24 45 45 H 1.08003 * 126.01273 * 180.19655 * 27 26 25 46 46 H 1.08007 * 125.81446 * 179.75498 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2040 0.0818 9 7 1.3295 -2.3857 -0.1053 10 6 2.0496 -3.6569 0.0030 11 6 1.0447 -4.8096 0.0544 12 1 0.3126 -4.7017 -0.7459 13 6 1.7836 -6.1568 -0.0884 14 6 1.0158 -7.0800 0.8942 15 6 0.6686 -6.0923 2.0389 16 7 0.3634 -4.8212 1.3571 17 6 -0.4078 -3.8314 1.8492 18 8 -0.6538 -2.8559 1.1665 19 6 -0.9536 -3.9317 3.2169 20 6 -0.0980 -4.1361 4.3012 21 6 -0.6143 -4.2342 5.5755 22 6 -1.9784 -4.1198 5.7878 23 6 -2.8361 -3.9172 4.7248 24 6 -2.3342 -3.8218 3.4347 25 7 -3.2005 -3.6163 2.3581 26 6 -4.5299 -3.3489 2.4401 27 6 -4.9990 -3.2151 1.1783 28 6 -3.9304 -3.4152 0.2968 29 7 -2.8545 -3.6553 1.0011 30 1 -0.4851 0.8368 -0.0733 31 1 0.3706 -2.3824 -0.2514 32 1 2.6503 -3.6579 0.9125 33 1 2.7005 -3.7808 -0.8625 34 1 1.7079 -6.5320 -1.1090 35 1 2.8270 -6.0581 0.2109 36 1 0.1134 -7.4792 0.4310 37 1 1.6560 -7.8850 1.2551 38 1 1.5201 -5.9689 2.7079 39 1 -0.2019 -6.4444 2.5922 40 1 0.9667 -4.2217 4.1412 41 1 0.0481 -4.3971 6.4129 42 1 -2.3738 -4.1938 6.7900 43 1 -3.8989 -3.8332 4.8977 44 1 -5.1072 -3.2573 3.3482 45 1 -6.0194 -2.9964 0.9000 46 1 -3.9849 -3.3776 -0.7812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499927522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = 106.442651 kcal Electronic energy + Delta-G solvation = -30931.868992 eV Core-core repulsion = 27017.291009 eV Total energy + Delta-G solvation = -3914.577983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.44175 -41.07308 -39.65227 -37.94524 -36.18151 -34.48412 -33.46970 -32.79644 -31.69958 -30.97061 -30.26667 -29.88637 -26.66525 -25.49256 -24.44990 -24.30461 -23.09499 -22.22560 -21.50720 -21.41220 -20.10707 -19.29197 -18.87135 -17.94902 -17.43522 -16.80155 -16.55901 -16.15529 -16.15126 -15.99137 -15.40030 -15.20321 -14.86421 -14.84193 -14.69190 -14.52560 -14.32649 -13.99184 -13.69486 -13.61316 -13.49039 -13.31618 -13.12373 -12.86024 -12.78345 -12.65481 -12.30051 -12.27802 -12.08746 -11.93063 -11.62430 -11.51552 -11.42073 -11.21392 -10.87466 -10.38243 -10.03378 -9.96012 -9.30552 -8.99874 -8.76236 -7.75161 -5.07567 -0.21716 0.14652 1.30085 1.37401 1.41838 1.49291 1.54327 1.91746 2.18752 2.23777 2.57453 2.78434 3.46296 3.47787 3.57085 3.70557 3.82488 3.90835 3.96016 4.04477 4.12534 4.26894 4.29096 4.37003 4.41803 4.46012 4.46707 4.66698 4.71853 4.76850 4.81243 4.84134 4.89412 4.91833 4.97866 5.01974 5.12841 5.17919 5.21676 5.30559 5.38950 5.41743 5.47789 5.65483 5.76169 5.80527 6.28257 6.36363 6.75007 6.85981 7.42814 7.71377 8.37352 8.68202 9.41776 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008547 B = 0.005228 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3275.314304 B = 5354.207293 C = 6344.940797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.075 4.075 3 Si 0.964 3.036 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.247 4.247 8 H 0.062 0.938 9 N -0.737 5.737 10 C 0.144 3.856 11 C 0.138 3.862 12 H 0.036 0.964 13 C -0.112 4.112 14 C -0.116 4.116 15 C 0.100 3.900 16 N -0.617 5.617 17 C 0.552 3.448 18 O -0.480 6.480 19 C -0.149 4.149 20 C -0.077 4.077 21 C -0.126 4.126 22 C -0.067 4.067 23 C -0.146 4.146 24 C 0.168 3.832 25 N -0.340 5.340 26 C 0.039 3.961 27 C -0.257 4.257 28 C 0.021 3.979 29 N -0.288 5.288 30 H 0.237 0.763 31 H 0.391 0.609 32 H 0.011 0.989 33 H 0.021 0.979 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.129 0.871 41 H 0.168 0.832 42 H 0.181 0.819 43 H 0.164 0.836 44 H 0.219 0.781 45 H 0.183 0.817 46 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.140 -19.284 13.572 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.268 4.268 3 Si 0.794 3.206 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.196 1.196 7 C -0.380 4.380 8 H 0.080 0.920 9 N -0.389 5.389 10 C 0.016 3.984 11 C 0.033 3.967 12 H 0.055 0.945 13 C -0.151 4.151 14 C -0.153 4.153 15 C -0.022 4.022 16 N -0.355 5.355 17 C 0.339 3.661 18 O -0.351 6.351 19 C -0.155 4.155 20 C -0.096 4.096 21 C -0.144 4.144 22 C -0.085 4.085 23 C -0.166 4.166 24 C 0.074 3.926 25 N -0.117 5.117 26 C -0.101 4.101 27 C -0.285 4.285 28 C -0.167 4.167 29 N -0.105 5.105 30 H 0.046 0.954 31 H 0.233 0.767 32 H 0.029 0.971 33 H 0.039 0.961 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.147 0.853 41 H 0.185 0.815 42 H 0.198 0.802 43 H 0.181 0.819 44 H 0.235 0.765 45 H 0.200 0.800 46 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.972 -18.823 13.317 23.819 hybrid contribution -0.628 1.864 -0.849 2.143 sum -6.600 -16.960 12.468 22.060 Atomic orbital electron populations 1.70126 1.06231 1.24508 1.58046 1.25577 0.96242 1.00642 1.04376 0.85272 0.77602 0.80341 0.77403 1.21300 1.22714 1.19585 1.19557 0.90796 0.86381 1.41268 0.92007 1.43293 1.09267 1.00071 1.86280 1.21195 0.93980 0.86412 0.96848 1.21701 0.93074 0.96429 0.85456 0.94546 1.22608 0.99694 0.91006 1.01772 1.22781 1.00947 0.97021 0.94593 1.22482 1.00620 0.82920 0.96173 1.48348 1.49823 1.18293 1.19004 1.18056 0.78854 0.82538 0.86682 1.90868 1.55073 1.30667 1.58456 1.19830 0.92934 1.07873 0.94848 1.21299 0.99269 0.96915 0.92158 1.21530 0.96655 1.00072 0.96170 1.21590 0.92479 0.94692 0.99725 1.21177 1.02706 1.04274 0.88461 1.17961 0.87879 1.00286 0.86514 1.46186 1.07071 1.54110 1.04372 1.23433 0.83622 1.01076 1.01940 1.21936 1.01706 1.13832 0.90981 1.24512 0.90913 0.99651 1.01607 1.77958 1.23040 1.23027 0.86512 0.95442 0.76734 0.97105 0.96120 0.88738 0.89196 0.90977 0.86417 0.90686 0.91226 0.85338 0.81474 0.80220 0.81859 0.76478 0.79960 0.79444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -66.08 13.08 21.65 0.28 -65.80 16 2 C -0.08 -4.92 5.50 84.86 0.47 -4.46 16 3 Si 0.96 51.84 29.56 68.60 2.03 53.87 16 4 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 5 H -0.30 -16.23 7.11 99.48 0.71 -15.52 16 6 H -0.27 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.25 -15.96 9.98 84.03 0.84 -15.12 16 8 H 0.06 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -44.59 4.35 -343.44 -1.49 -46.08 16 10 C 0.14 6.79 5.63 86.38 0.49 7.28 16 11 C 0.14 5.32 3.07 45.34 0.14 5.46 16 12 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 13 C -0.11 -2.79 6.46 31.78 0.21 -2.58 16 14 C -0.12 -2.28 7.10 32.06 0.23 -2.05 16 15 C 0.10 2.56 5.77 86.93 0.50 3.07 16 16 N -0.62 -23.41 3.06 -791.26 -2.42 -25.83 16 17 C 0.55 25.18 5.60 86.71 0.49 25.67 16 18 O -0.48 -27.76 10.95 -3.97 -0.04 -27.80 16 19 C -0.15 -5.55 4.94 -19.99 -0.10 -5.65 16 20 C -0.08 -2.19 8.76 22.51 0.20 -2.00 16 21 C -0.13 -2.37 10.02 22.24 0.22 -2.15 16 22 C -0.07 -1.07 10.03 22.30 0.22 -0.85 16 23 C -0.15 -3.15 9.45 22.36 0.21 -2.94 16 24 C 0.17 5.60 6.68 38.49 0.26 5.86 16 25 N -0.34 -12.45 3.77 -186.72 -0.70 -13.16 16 26 C 0.04 1.07 10.81 83.39 0.90 1.97 16 27 C -0.26 -7.28 10.80 22.00 0.24 -7.04 16 28 C 0.02 0.79 12.02 85.26 1.02 1.81 16 29 N -0.29 -12.64 8.31 -56.97 -0.47 -13.11 16 30 H 0.24 16.23 8.32 -92.71 -0.77 15.46 16 31 H 0.39 25.82 4.74 -92.80 -0.44 25.38 16 32 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.02 0.96 8.12 -2.39 -0.02 0.94 16 34 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.09 2.02 7.85 -2.39 -0.02 2.00 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.07 1.69 7.89 -2.39 -0.02 1.67 16 39 H 0.07 1.71 7.75 -2.39 -0.02 1.69 16 40 H 0.13 3.57 7.71 -2.91 -0.02 3.55 16 41 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 42 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16 43 H 0.16 2.32 6.80 -2.91 -0.02 2.30 16 44 H 0.22 3.51 7.12 -2.91 -0.02 3.49 16 45 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 46 H 0.19 6.21 8.06 -2.91 -0.02 6.18 16 Total: -1.00 -98.43 374.09 4.26 -94.17 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.56 Total: 37.46 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.53 Total: 6.28 kcal Atomic # 7 Polarization: -159.17 SS G_CDS: -4.81 Total: -163.98 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.04 Total: -27.80 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 2.03 Total: 53.87 kcal Total: -98.43 4.26 -94.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499927522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.613 kcal (2) G-P(sol) polarization free energy of solvation -98.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds