Wall clock time and date at job start Sat Apr 11 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00082 * 2 1 4 4 H 1.48502 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47037 * 299.99639 * 3 2 1 6 6 H 1.48500 * 109.47126 * 60.00091 * 3 2 1 7 7 C 1.38810 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99882 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00380 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00424 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46913 * 34.99698 * 10 9 7 12 12 C 1.52997 * 109.47269 * 154.99750 * 10 9 7 13 13 N 1.46505 * 109.47212 * 304.99931 * 12 10 9 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 10 15 15 O 1.21606 * 120.00433 * 0.02562 * 14 13 12 16 16 C 1.47416 * 119.99714 * 179.97438 * 14 13 12 17 17 C 1.41330 * 126.40785 * 0.03138 * 16 14 13 18 18 N 1.30482 * 108.06729 * 179.97438 * 17 16 14 19 19 N 1.39931 * 108.91399 * 359.97438 * 18 17 16 20 20 C 1.40150 * 125.77320 * 180.02562 * 19 18 17 21 21 C 1.38848 * 120.06943 * 179.70126 * 20 19 18 22 22 C 1.38116 * 119.93145 * 179.67966 * 21 20 19 23 23 C 1.38284 * 120.06617 * 0.61663 * 22 21 20 24 24 C 1.38282 * 120.13528 * 359.68399 * 23 22 21 25 25 C 1.38116 * 120.06797 * 359.97438 * 24 23 22 26 26 C 1.34539 * 108.45788 * 359.75150 * 19 18 17 27 27 C 1.52997 * 109.46834 * 275.00132 * 10 9 7 28 28 C 1.53002 * 117.50022 * 128.74672 * 27 10 9 29 29 C 1.52997 * 117.50076 * 60.08477 * 27 10 9 30 30 H 0.97003 * 119.99850 * 0.02562 * 1 2 3 31 31 H 0.97007 * 119.99657 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47153 * 184.99923 * 12 10 9 33 33 H 1.09001 * 109.46832 * 65.00114 * 12 10 9 34 34 H 0.96996 * 119.99606 * 0.02562 * 13 12 10 35 35 H 1.07998 * 125.96777 * 359.97385 * 17 16 14 36 36 H 1.07998 * 120.03392 * 0.02562 * 21 20 19 37 37 H 1.08000 * 119.96805 * 180.34360 * 22 21 20 38 38 H 1.07998 * 119.93528 * 179.69805 * 23 22 21 39 39 H 1.08004 * 119.96418 * 180.02562 * 24 23 22 40 40 H 1.07997 * 120.03543 * 180.02562 * 25 24 23 41 41 H 1.08003 * 126.31457 * 180.23942 * 26 19 18 42 42 H 1.09003 * 115.54905 * 274.41110 * 27 10 9 43 43 H 1.09000 * 117.49650 * 359.97438 * 28 27 10 44 44 H 1.09001 * 117.49817 * 145.01411 * 28 27 10 45 45 H 1.08996 * 117.49862 * 214.97497 * 29 27 10 46 46 H 1.08996 * 117.50355 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 2.9687 -3.5506 0.5900 12 6 1.1808 -4.7522 0.6102 13 7 0.7342 -4.3355 1.9419 14 6 -0.0556 -5.1473 2.6723 15 8 -0.3972 -6.2258 2.2263 16 6 -0.5045 -4.7283 4.0125 17 6 -0.1907 -3.5118 4.6600 18 7 -0.7737 -3.5126 5.8273 19 7 -1.4790 -4.7113 5.9812 20 6 -2.2331 -5.0799 7.1036 21 6 -2.8931 -6.3012 7.1278 22 6 -3.6301 -6.6644 8.2381 23 6 -3.7213 -5.8076 9.3196 24 6 -3.0702 -4.5879 9.2960 25 6 -2.3260 -4.2221 8.1915 26 6 -1.3158 -5.4477 4.8671 27 6 2.4218 -4.0356 -1.4365 28 6 3.8820 -4.3893 -1.7257 29 6 3.3027 -3.0622 -2.2222 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3881 0.0005 32 1 1.7556 -5.6747 0.6919 33 1 0.3132 -4.9200 -0.0280 34 1 1.0064 -3.4751 2.2974 35 1 0.4243 -2.7199 4.2587 36 1 -2.8258 -6.9689 6.2817 37 1 -4.1391 -7.6166 8.2598 38 1 -4.3021 -6.0916 10.1847 39 1 -3.1431 -3.9210 10.1424 40 1 -1.8173 -3.2695 8.1737 41 1 -1.7388 -6.4231 4.6775 42 1 1.6539 -4.5775 -1.9886 43 1 4.5835 -4.3517 -0.8923 44 1 4.0747 -5.1635 -2.4684 45 1 3.1146 -2.9640 -3.2913 46 1 3.6227 -2.1517 -1.7156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566716206.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:34 Heat of formation + Delta-G solvation = 91.925551 kcal Electronic energy + Delta-G solvation = -27996.110880 eV Core-core repulsion = 24080.903389 eV Total energy + Delta-G solvation = -3915.207491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.81206 -40.51003 -39.80338 -38.88520 -36.05283 -35.15406 -34.67235 -32.72250 -32.30267 -31.37847 -30.43609 -29.34487 -25.92870 -24.96559 -24.32323 -23.69578 -22.99469 -22.63404 -21.69956 -21.33695 -20.70942 -19.72483 -19.09639 -17.79638 -17.05262 -16.87177 -16.84488 -16.63152 -16.34380 -16.01424 -15.97448 -15.62269 -15.25416 -15.07519 -14.94162 -14.86161 -14.54319 -14.26352 -13.88677 -13.82298 -13.57410 -12.97032 -12.87670 -12.69864 -12.63716 -12.44753 -12.35892 -12.21671 -11.96066 -11.92824 -11.69647 -11.51004 -11.08543 -10.97448 -10.83185 -10.72257 -10.35821 -10.05159 -9.94339 -9.19358 -8.95982 -7.85602 -5.12609 -0.34948 0.30564 0.77613 1.11472 1.14399 1.49766 1.52315 1.59537 2.31577 2.42322 2.60269 2.75903 3.11480 3.29053 3.51964 3.56521 3.82679 3.85901 3.88284 3.99083 4.04175 4.12790 4.20294 4.22876 4.39995 4.40573 4.43934 4.46987 4.54065 4.62484 4.67291 4.73138 4.92389 4.93819 4.99746 5.10722 5.19597 5.21121 5.32185 5.37278 5.44038 5.49167 5.51308 5.58107 5.65763 5.68277 6.03333 6.32889 6.34011 6.65602 7.27992 7.42682 8.14167 8.39485 9.37186 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.002472 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.562232 B =11324.849797 C =13061.321674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.070 4.070 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.304 1.304 6 H -0.299 1.299 7 C -0.212 4.212 8 H 0.078 0.922 9 N -0.723 5.723 10 C 0.196 3.804 11 H 0.059 0.941 12 C 0.130 3.870 13 N -0.705 5.705 14 C 0.594 3.406 15 O -0.589 6.589 16 C -0.295 4.295 17 C 0.095 3.905 18 N -0.314 5.314 19 N -0.311 5.311 20 C 0.118 3.882 21 C -0.143 4.143 22 C -0.091 4.091 23 C -0.120 4.120 24 C -0.099 4.099 25 C -0.134 4.134 26 C 0.130 3.870 27 C -0.172 4.172 28 C -0.162 4.162 29 C -0.175 4.175 30 H 0.246 0.754 31 H 0.373 0.627 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.410 0.590 35 H 0.208 0.792 36 H 0.146 0.854 37 H 0.165 0.835 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.124 0.876 41 H 0.214 0.786 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 -15.106 16.510 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.232 1.232 6 H -0.227 1.227 7 C -0.344 4.344 8 H 0.095 0.905 9 N -0.362 5.362 10 C 0.087 3.913 11 H 0.077 0.923 12 C 0.005 3.995 13 N -0.355 5.355 14 C 0.382 3.618 15 O -0.472 6.472 16 C -0.309 4.309 17 C -0.093 4.093 18 N -0.132 5.132 19 N -0.083 5.083 20 C 0.028 3.972 21 C -0.163 4.163 22 C -0.110 4.110 23 C -0.139 4.139 24 C -0.118 4.118 25 C -0.154 4.154 26 C -0.019 4.019 27 C -0.194 4.194 28 C -0.200 4.200 29 C -0.213 4.213 30 H 0.055 0.945 31 H 0.205 0.795 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.246 0.754 35 H 0.224 0.776 36 H 0.163 0.837 37 H 0.182 0.818 38 H 0.178 0.822 39 H 0.172 0.828 40 H 0.142 0.858 41 H 0.231 0.769 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.124 0.876 45 H 0.103 0.897 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.883 -15.071 17.344 23.303 hybrid contribution 0.269 1.561 -1.224 2.002 sum -3.615 -13.510 16.120 21.341 Atomic orbital electron populations 1.69812 1.06345 1.25357 1.60182 1.25325 0.96004 1.00261 1.04662 0.85316 0.78521 0.81289 0.76111 1.19083 1.23163 1.22670 1.19470 0.91106 0.84511 1.39338 0.90456 1.42575 1.05313 1.00356 1.87961 1.20168 0.94139 0.84711 0.92240 0.92285 1.21492 0.97992 0.97508 0.82458 1.45703 1.50452 1.21626 1.17704 1.17307 0.77503 0.83367 0.83626 1.90707 1.59340 1.23867 1.73262 1.20302 1.13019 0.99002 0.98602 1.24538 0.96856 0.97226 0.90674 1.77212 1.13401 1.02021 1.20547 1.45846 1.36598 1.13321 1.12539 1.18042 0.96435 0.96820 0.85943 1.21205 0.99146 0.94261 1.01704 1.21422 0.96901 1.01038 0.91617 1.21711 0.99000 0.93441 0.99698 1.21409 0.95340 0.97710 0.97305 1.21053 1.01387 0.99809 0.93106 1.23315 0.95289 0.98379 0.84896 1.22925 0.93952 1.03830 0.98680 1.23035 0.95193 0.98256 1.03480 1.22742 1.04898 0.94345 0.99284 0.94528 0.79513 0.89982 0.92924 0.75391 0.77552 0.83664 0.81794 0.82172 0.82831 0.85760 0.76909 0.88775 0.88567 0.87567 0.89659 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.60 13.06 21.65 0.28 -56.31 16 2 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.96 44.55 29.55 68.60 2.03 46.58 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.21 -10.58 8.63 84.03 0.73 -9.86 16 8 H 0.08 3.73 6.91 -2.91 -0.02 3.71 16 9 N -0.72 -32.45 4.54 -322.94 -1.47 -33.92 16 10 C 0.20 6.96 2.70 44.99 0.12 7.08 16 11 H 0.06 2.08 7.84 -2.39 -0.02 2.06 16 12 C 0.13 4.29 5.22 86.38 0.45 4.74 16 13 N -0.71 -23.46 5.38 -466.38 -2.51 -25.97 16 14 C 0.59 20.33 7.81 86.66 0.68 21.01 16 15 O -0.59 -22.82 16.90 -4.05 -0.07 -22.89 16 16 C -0.30 -8.98 6.13 -20.14 -0.12 -9.11 16 17 C 0.10 2.83 11.50 85.65 0.99 3.81 16 18 N -0.31 -9.57 11.77 -56.23 -0.66 -10.23 16 19 N -0.31 -8.34 3.77 -186.20 -0.70 -9.04 16 20 C 0.12 2.62 6.68 38.10 0.25 2.87 16 21 C -0.14 -2.26 9.45 22.39 0.21 -2.05 16 22 C -0.09 -0.98 10.04 22.25 0.22 -0.76 16 23 C -0.12 -1.20 10.04 22.29 0.22 -0.98 16 24 C -0.10 -1.34 10.04 22.25 0.22 -1.12 16 25 C -0.13 -2.72 9.65 22.39 0.22 -2.51 16 26 C 0.13 3.40 10.60 84.24 0.89 4.29 16 27 C -0.17 -5.65 5.36 -10.80 -0.06 -5.71 16 28 C -0.16 -4.37 10.18 30.62 0.31 -4.05 16 29 C -0.18 -5.90 9.78 30.62 0.30 -5.60 16 30 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.37 18.77 7.80 -92.70 -0.72 18.05 16 32 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.41 13.65 7.09 -92.71 -0.66 12.99 16 35 H 0.21 5.54 7.50 -2.91 -0.02 5.52 16 36 H 0.15 1.81 6.71 -2.91 -0.02 1.79 16 37 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.16 0.59 8.06 -2.91 -0.02 0.56 16 39 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.12 2.82 7.68 -2.91 -0.02 2.79 16 41 H 0.21 4.27 7.01 -2.91 -0.02 4.25 16 42 H 0.09 3.04 8.11 -2.39 -0.02 3.02 16 43 H 0.10 2.44 8.05 -2.39 -0.02 2.42 16 44 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 46 H 0.08 3.12 6.23 -2.39 -0.01 3.11 16 Total: -1.00 -68.69 391.59 2.65 -66.04 By element: Atomic # 1 Polarization: 47.34 SS G_CDS: -0.35 Total: 46.98 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 6.10 Total: -1.24 kcal Atomic # 7 Polarization: -130.41 SS G_CDS: -5.06 Total: -135.47 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.07 Total: -22.89 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -68.69 2.65 -66.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566716206.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.968 kcal (2) G-P(sol) polarization free energy of solvation -68.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds