Wall clock time and date at job start Sat Apr 11 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47346 * 299.99841 * 3 2 1 6 6 H 1.48503 * 109.46960 * 59.99674 * 3 2 1 7 7 C 1.38816 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99909 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47140 * 324.99754 * 10 9 7 12 12 C 1.53004 * 109.46943 * 205.00011 * 10 9 7 13 13 N 1.46499 * 109.47198 * 54.99919 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21603 * 120.00257 * 359.72088 * 14 13 12 16 16 C 1.47416 * 119.99544 * 179.72400 * 14 13 12 17 17 C 1.41324 * 126.41188 * 0.02562 * 16 14 13 18 18 N 1.30473 * 108.06834 * 179.97438 * 17 16 14 19 19 N 1.39937 * 108.91706 * 359.97438 * 18 17 16 20 20 C 1.40149 * 125.77434 * 180.02562 * 19 18 17 21 21 C 1.38846 * 120.06728 * 179.70353 * 20 19 18 22 22 C 1.38116 * 119.92961 * 179.67684 * 21 20 19 23 23 C 1.38279 * 120.06797 * 0.61834 * 22 21 20 24 24 C 1.38283 * 120.13772 * 359.67920 * 23 22 21 25 25 C 1.38118 * 120.06146 * 359.97438 * 24 23 22 26 26 C 1.34542 * 108.45351 * 359.75400 * 19 18 17 27 27 C 1.52995 * 109.47091 * 85.00050 * 10 9 7 28 28 C 1.52999 * 117.50225 * 8.74581 * 27 10 9 29 29 C 1.52999 * 117.49761 * 300.08359 * 27 10 9 30 30 H 0.96996 * 119.99816 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00310 * 359.97438 * 9 7 2 32 32 H 1.09009 * 109.46730 * 294.99706 * 12 10 9 33 33 H 1.08998 * 109.46846 * 175.00251 * 12 10 9 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 35 35 H 1.07998 * 125.96766 * 359.97438 * 17 16 14 36 36 H 1.07994 * 120.03421 * 359.97438 * 21 20 19 37 37 H 1.08003 * 119.96967 * 180.34006 * 22 21 20 38 38 H 1.08003 * 119.93411 * 179.70263 * 23 22 21 39 39 H 1.07995 * 119.97104 * 180.02562 * 24 23 22 40 40 H 1.08007 * 120.03119 * 180.02562 * 25 24 23 41 41 H 1.07998 * 126.31192 * 180.24058 * 26 19 18 42 42 H 1.09006 * 115.55266 * 154.41988 * 27 10 9 43 43 H 1.08993 * 117.49781 * 359.97438 * 28 27 10 44 44 H 1.09000 * 117.50138 * 145.02405 * 28 27 10 45 45 H 1.09009 * 117.50018 * 214.98040 * 29 27 10 46 46 H 1.08997 * 117.49907 * 0.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 1.1812 -4.7524 -0.6082 13 7 0.7356 -4.3363 -1.9403 14 6 -0.0579 -5.1463 -2.6689 15 8 -0.3998 -6.2246 -2.2226 16 6 -0.5112 -4.7249 -4.0068 17 6 -0.1975 -3.5086 -4.6543 18 7 -0.7843 -3.5074 -5.8197 19 7 -1.4912 -4.7054 -5.9729 20 6 -2.2483 -5.0723 -7.0937 21 6 -2.8995 -6.2983 -7.1222 22 6 -3.6504 -6.6542 -8.2255 23 6 -3.7436 -5.7965 -9.3061 24 6 -3.0912 -4.5774 -9.2832 25 6 -2.3447 -4.2129 -8.1798 26 6 -1.3160 -5.4479 -4.8646 27 6 2.4207 -4.0350 1.4391 28 6 1.8113 -3.1975 2.5652 29 6 3.2977 -3.0593 2.2264 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 0.3131 -4.9200 0.0295 33 1 1.7562 -5.6749 -0.6890 34 1 1.0081 -3.4761 -2.2960 35 1 0.4201 -2.7180 -4.2544 36 1 -2.8228 -6.9708 -6.2807 37 1 -4.1616 -7.6054 -8.2461 38 1 -4.3275 -6.0791 -10.1696 39 1 -3.1662 -3.9095 -10.1285 40 1 -1.8356 -3.2604 -8.1623 41 1 -1.7311 -6.4275 -4.6790 42 1 2.5619 -5.1000 1.6237 43 1 1.1523 -2.3769 2.2820 44 1 1.5519 -3.7114 3.4908 45 1 4.0155 -3.4823 2.9293 46 1 3.6158 -2.1478 1.7204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566716207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:38 Heat of formation + Delta-G solvation = 113.236521 kcal Electronic energy + Delta-G solvation = -28119.644547 eV Core-core repulsion = 24205.361169 eV Total energy + Delta-G solvation = -3914.283378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.78831 -39.46126 -38.80861 -37.51574 -34.45456 -33.84690 -33.21026 -31.61163 -30.95954 -30.31812 -29.43859 -27.97016 -24.56201 -23.51281 -23.49226 -22.67930 -21.70184 -21.35539 -20.80227 -19.84852 -19.16508 -18.53785 -17.33326 -16.81251 -16.10537 -15.68934 -15.65921 -15.43007 -15.16693 -14.78357 -14.66134 -14.36619 -14.19326 -13.90823 -13.80283 -13.51888 -13.05001 -12.97648 -12.93017 -12.77685 -12.04256 -12.02095 -11.65931 -11.27695 -11.19130 -11.05130 -10.89433 -10.84683 -10.59281 -10.51075 -10.09139 -9.73468 -9.64084 -9.43776 -9.42991 -9.29259 -9.15744 -8.98808 -8.63149 -8.28266 -7.07027 -5.83971 -3.14099 0.46380 0.92419 1.76695 2.06180 2.19322 3.38398 3.40066 3.45184 3.47252 3.60297 3.70071 4.21128 4.41285 4.49769 4.57605 4.61114 4.64913 4.74867 4.94526 5.02622 5.12652 5.24188 5.34760 5.38971 5.46339 5.57007 5.59396 5.67514 5.76495 5.86351 5.90143 5.93805 6.00284 6.07295 6.07556 6.11210 6.32415 6.36565 6.39444 6.48205 6.66472 6.77005 6.85355 6.93111 7.02200 7.28695 7.38166 7.66073 7.99817 8.32991 8.62180 9.45612 9.99503 10.35821 11.37337 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.002467 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.870463 B =11348.434059 C =12979.685455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.008 4.008 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.191 3.809 11 H 0.058 0.942 12 C 0.121 3.879 13 N -0.706 5.706 14 C 0.591 3.409 15 O -0.562 6.562 16 C -0.270 4.270 17 C 0.100 3.900 18 N -0.292 5.292 19 N -0.317 5.317 20 C 0.159 3.841 21 C -0.140 4.140 22 C -0.093 4.093 23 C -0.130 4.130 24 C -0.097 4.097 25 C -0.116 4.116 26 C 0.120 3.880 27 C -0.177 4.177 28 C -0.163 4.163 29 C -0.176 4.176 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.409 0.591 35 H 0.202 0.798 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.190 0.810 42 H 0.086 0.914 43 H 0.118 0.882 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.309 -12.624 -14.995 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.204 4.204 3 Si 0.732 3.268 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.080 3.920 11 H 0.076 0.924 12 C -0.003 4.003 13 N -0.356 5.356 14 C 0.378 3.622 15 O -0.442 6.442 16 C -0.284 4.284 17 C -0.089 4.089 18 N -0.109 5.109 19 N -0.090 5.090 20 C 0.067 3.933 21 C -0.161 4.161 22 C -0.112 4.112 23 C -0.149 4.149 24 C -0.115 4.115 25 C -0.136 4.136 26 C -0.027 4.027 27 C -0.199 4.199 28 C -0.200 4.200 29 C -0.213 4.213 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.246 0.754 35 H 0.218 0.782 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.207 0.793 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.639 -12.572 -15.797 20.715 hybrid contribution 0.449 0.992 0.871 1.394 sum -4.190 -11.580 -14.926 19.350 Atomic orbital electron populations 1.69665 1.04993 1.25610 1.57166 1.24706 0.95396 0.97511 1.02821 0.86218 0.78860 0.84507 0.77179 1.20607 1.21944 1.21978 1.19198 0.90914 0.83769 1.43102 0.91015 1.42489 1.05869 0.99475 1.88085 1.20005 0.94136 0.86087 0.91733 0.92441 1.21578 0.98794 0.97392 0.82537 1.45729 1.50275 1.21761 1.17860 1.17110 0.78088 0.83893 0.83143 1.90735 1.58325 1.22800 1.72363 1.20420 1.11243 0.97904 0.98859 1.24415 0.96707 0.97117 0.90662 1.77265 1.12407 1.00910 1.20315 1.45676 1.37073 1.13858 1.12346 1.17614 0.94617 0.95054 0.86039 1.20911 0.99588 0.95047 1.00554 1.20986 0.97717 0.99906 0.92580 1.21261 1.00268 0.94472 0.98893 1.21102 0.96096 0.96702 0.97626 1.20974 1.00348 1.00210 0.92068 1.22949 0.96416 0.97774 0.85554 1.23068 1.05933 0.95340 0.95554 1.22913 0.96684 1.03534 0.96887 1.22858 0.93495 1.01916 1.03051 0.93511 0.77892 0.91607 0.91772 0.75423 0.78189 0.84948 0.84893 0.85396 0.84990 0.84206 0.79338 0.89612 0.86335 0.91316 0.91053 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.93 13.06 55.49 0.72 -25.21 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 21.16 29.55 -169.99 -5.02 16.13 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 7 C -0.24 -5.82 8.15 -15.06 -0.12 -5.94 16 8 H 0.07 1.74 6.91 -52.48 -0.36 1.38 16 9 N -0.72 -15.56 3.08 -53.42 -0.16 -15.72 16 10 C 0.19 3.43 2.86 -67.93 -0.19 3.23 16 11 H 0.06 1.04 8.08 -51.93 -0.42 0.63 16 12 C 0.12 2.02 5.22 -4.04 -0.02 2.00 16 13 N -0.71 -11.56 5.38 -61.38 -0.33 -11.89 16 14 C 0.59 9.98 7.81 -12.52 -0.10 9.89 16 15 O -0.56 -10.87 16.90 5.27 0.09 -10.78 16 16 C -0.27 -4.03 6.13 -105.05 -0.64 -4.67 16 17 C 0.10 1.42 11.50 -16.96 -0.20 1.23 16 18 N -0.29 -4.28 11.77 30.87 0.36 -3.92 16 19 N -0.32 -4.20 3.77 -10.21 -0.04 -4.24 16 20 C 0.16 1.78 6.68 -83.60 -0.56 1.23 16 21 C -0.14 -1.24 9.45 -39.40 -0.37 -1.61 16 22 C -0.09 -0.65 10.04 -39.61 -0.40 -1.05 16 23 C -0.13 -0.87 10.04 -39.55 -0.40 -1.27 16 24 C -0.10 -0.74 10.04 -39.61 -0.40 -1.14 16 25 C -0.12 -1.19 9.65 -39.40 -0.38 -1.57 16 26 C 0.12 1.58 10.60 -16.43 -0.17 1.40 16 27 C -0.18 -3.04 5.70 -90.62 -0.52 -3.56 16 28 C -0.16 -3.02 9.74 -26.69 -0.26 -3.28 16 29 C -0.18 -3.11 9.87 -26.69 -0.26 -3.37 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.39 9.29 7.80 -40.82 -0.32 8.98 16 32 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.41 6.63 7.09 -40.82 -0.29 6.34 16 35 H 0.20 2.53 7.50 -52.49 -0.39 2.13 16 36 H 0.13 0.96 6.71 -52.49 -0.35 0.61 16 37 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 38 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.14 1.49 7.68 -52.48 -0.40 1.09 16 41 H 0.19 1.98 7.01 -52.49 -0.37 1.62 16 42 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 43 H 0.12 2.63 6.68 -51.93 -0.35 2.29 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 46 H 0.10 2.02 6.22 -51.93 -0.32 1.70 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -30.44 388.68 -9.70 -40.15 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -6.09 Total: 18.40 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -5.09 Total: -8.78 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.55 Total: -60.97 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.44 -9.70 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566716207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.382 kcal (2) G-P(sol) polarization free energy of solvation -30.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds