Wall clock time and date at job start Sat Apr 11 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47346 * 299.99841 * 3 2 1 6 6 H 1.48503 * 109.46960 * 59.99674 * 3 2 1 7 7 C 1.38816 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99909 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47140 * 324.99754 * 10 9 7 12 12 C 1.53004 * 109.46943 * 205.00011 * 10 9 7 13 13 N 1.46499 * 109.47198 * 54.99919 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21603 * 120.00257 * 359.72088 * 14 13 12 16 16 C 1.47416 * 119.99544 * 179.72400 * 14 13 12 17 17 C 1.41324 * 126.41188 * 0.02562 * 16 14 13 18 18 N 1.30473 * 108.06834 * 179.97438 * 17 16 14 19 19 N 1.39937 * 108.91706 * 359.97438 * 18 17 16 20 20 C 1.40149 * 125.77434 * 180.02562 * 19 18 17 21 21 C 1.38846 * 120.06728 * 179.70353 * 20 19 18 22 22 C 1.38116 * 119.92961 * 179.67684 * 21 20 19 23 23 C 1.38279 * 120.06797 * 0.61834 * 22 21 20 24 24 C 1.38283 * 120.13772 * 359.67920 * 23 22 21 25 25 C 1.38118 * 120.06146 * 359.97438 * 24 23 22 26 26 C 1.34542 * 108.45351 * 359.75400 * 19 18 17 27 27 C 1.52995 * 109.47091 * 85.00050 * 10 9 7 28 28 C 1.52999 * 117.50225 * 8.74581 * 27 10 9 29 29 C 1.52999 * 117.49761 * 300.08359 * 27 10 9 30 30 H 0.96996 * 119.99816 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00310 * 359.97438 * 9 7 2 32 32 H 1.09009 * 109.46730 * 294.99706 * 12 10 9 33 33 H 1.08998 * 109.46846 * 175.00251 * 12 10 9 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 35 35 H 1.07998 * 125.96766 * 359.97438 * 17 16 14 36 36 H 1.07994 * 120.03421 * 359.97438 * 21 20 19 37 37 H 1.08003 * 119.96967 * 180.34006 * 22 21 20 38 38 H 1.08003 * 119.93411 * 179.70263 * 23 22 21 39 39 H 1.07995 * 119.97104 * 180.02562 * 24 23 22 40 40 H 1.08007 * 120.03119 * 180.02562 * 25 24 23 41 41 H 1.07998 * 126.31192 * 180.24058 * 26 19 18 42 42 H 1.09006 * 115.55266 * 154.41988 * 27 10 9 43 43 H 1.08993 * 117.49781 * 359.97438 * 28 27 10 44 44 H 1.09000 * 117.50138 * 145.02405 * 28 27 10 45 45 H 1.09009 * 117.50018 * 214.98040 * 29 27 10 46 46 H 1.08997 * 117.49907 * 0.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 1.1812 -4.7524 -0.6082 13 7 0.7356 -4.3363 -1.9403 14 6 -0.0579 -5.1463 -2.6689 15 8 -0.3998 -6.2246 -2.2226 16 6 -0.5112 -4.7249 -4.0068 17 6 -0.1975 -3.5086 -4.6543 18 7 -0.7843 -3.5074 -5.8197 19 7 -1.4912 -4.7054 -5.9729 20 6 -2.2483 -5.0723 -7.0937 21 6 -2.8995 -6.2983 -7.1222 22 6 -3.6504 -6.6542 -8.2255 23 6 -3.7436 -5.7965 -9.3061 24 6 -3.0912 -4.5774 -9.2832 25 6 -2.3447 -4.2129 -8.1798 26 6 -1.3160 -5.4479 -4.8646 27 6 2.4207 -4.0350 1.4391 28 6 1.8113 -3.1975 2.5652 29 6 3.2977 -3.0593 2.2264 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 0.3131 -4.9200 0.0295 33 1 1.7562 -5.6749 -0.6890 34 1 1.0081 -3.4761 -2.2960 35 1 0.4201 -2.7180 -4.2544 36 1 -2.8228 -6.9708 -6.2807 37 1 -4.1616 -7.6054 -8.2461 38 1 -4.3275 -6.0791 -10.1696 39 1 -3.1662 -3.9095 -10.1285 40 1 -1.8356 -3.2604 -8.1623 41 1 -1.7311 -6.4275 -4.6790 42 1 2.5619 -5.1000 1.6237 43 1 1.1523 -2.3769 2.2820 44 1 1.5519 -3.7114 3.4908 45 1 4.0155 -3.4823 2.9293 46 1 3.6158 -2.1478 1.7204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566716207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:37 Heat of formation + Delta-G solvation = 96.149224 kcal Electronic energy + Delta-G solvation = -28120.385508 eV Core-core repulsion = 24205.361169 eV Total energy + Delta-G solvation = -3915.024339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.80945 -40.51427 -39.81368 -39.00041 -35.86400 -35.05644 -34.67725 -32.63016 -32.29117 -31.37387 -30.45312 -29.41762 -25.90103 -25.07640 -24.32326 -23.83788 -23.01289 -22.59049 -21.69856 -21.11531 -20.47674 -19.66604 -19.09522 -17.81968 -17.06871 -16.89866 -16.79347 -16.56062 -16.35631 -16.26617 -15.87875 -15.64927 -15.23436 -15.17146 -14.97039 -14.56303 -14.49677 -14.33598 -13.88353 -13.80902 -13.59050 -12.91507 -12.86331 -12.67264 -12.61530 -12.54257 -12.44020 -12.07631 -11.95397 -11.89714 -11.56144 -11.50916 -11.05624 -11.01036 -10.77925 -10.57773 -10.35457 -10.05183 -9.93063 -9.19167 -8.95596 -7.85395 -5.12331 -0.34822 0.30528 0.78002 1.12386 1.13919 1.49331 1.52611 1.59158 2.32549 2.43315 2.60753 2.75909 3.17363 3.29513 3.50192 3.56737 3.84408 3.88340 3.92790 3.98703 4.05122 4.12963 4.21868 4.31184 4.38170 4.39985 4.47909 4.54397 4.56697 4.63071 4.65697 4.75201 4.99133 4.99710 5.00192 5.10860 5.22930 5.30348 5.32272 5.37336 5.46465 5.49184 5.60315 5.68345 5.70569 5.72232 6.03405 6.33169 6.34647 6.66590 7.28991 7.43452 8.14702 8.39968 9.37019 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.002467 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.870463 B =11348.434059 C =12979.685455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.300 1.300 6 H -0.305 1.305 7 C -0.212 4.212 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.192 3.808 11 H 0.062 0.938 12 C 0.130 3.870 13 N -0.705 5.705 14 C 0.594 3.406 15 O -0.589 6.589 16 C -0.295 4.295 17 C 0.095 3.905 18 N -0.314 5.314 19 N -0.311 5.311 20 C 0.118 3.882 21 C -0.143 4.143 22 C -0.091 4.091 23 C -0.120 4.120 24 C -0.099 4.099 25 C -0.134 4.134 26 C 0.129 3.871 27 C -0.167 4.167 28 C -0.174 4.174 29 C -0.171 4.171 30 H 0.245 0.755 31 H 0.374 0.626 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.410 0.590 35 H 0.208 0.792 36 H 0.146 0.854 37 H 0.165 0.835 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.124 0.876 41 H 0.214 0.786 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.172 -14.922 -16.295 22.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.228 1.228 6 H -0.233 1.233 7 C -0.344 4.344 8 H 0.095 0.905 9 N -0.360 5.360 10 C 0.082 3.918 11 H 0.080 0.920 12 C 0.006 3.994 13 N -0.355 5.355 14 C 0.382 3.618 15 O -0.472 6.472 16 C -0.309 4.309 17 C -0.093 4.093 18 N -0.132 5.132 19 N -0.083 5.083 20 C 0.028 3.972 21 C -0.163 4.163 22 C -0.110 4.110 23 C -0.139 4.139 24 C -0.118 4.118 25 C -0.154 4.154 26 C -0.019 4.019 27 C -0.188 4.188 28 C -0.211 4.211 29 C -0.208 4.208 30 H 0.054 0.946 31 H 0.207 0.793 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.246 0.754 35 H 0.224 0.776 36 H 0.163 0.837 37 H 0.182 0.818 38 H 0.178 0.822 39 H 0.172 0.828 40 H 0.142 0.858 41 H 0.231 0.769 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.119 0.881 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.454 -14.885 -17.122 23.120 hybrid contribution 0.350 1.576 1.141 1.977 sum -4.104 -13.309 -15.981 21.198 Atomic orbital electron populations 1.69800 1.06252 1.25305 1.60092 1.25269 0.95926 1.00069 1.04631 0.85360 0.78550 0.81548 0.76035 1.19196 1.22772 1.23269 1.19436 0.91077 0.84478 1.39427 0.90531 1.42542 1.05297 1.00272 1.87853 1.20150 0.94046 0.84815 0.92745 0.91966 1.21480 0.98151 0.97441 0.82350 1.45708 1.50271 1.21724 1.17751 1.17302 0.77514 0.83385 0.83611 1.90706 1.59445 1.23882 1.73160 1.20308 1.13176 0.98826 0.98600 1.24533 0.96848 0.97267 0.90631 1.77210 1.13206 1.02216 1.20579 1.45848 1.36459 1.13146 1.12874 1.18040 0.96429 0.96759 0.86003 1.21203 0.99172 0.94178 1.01766 1.21422 0.96781 1.01078 0.91698 1.21710 0.99038 0.93456 0.99655 1.21408 0.95339 0.97709 0.97306 1.21053 1.01384 0.99849 0.93084 1.23316 0.95302 0.98303 0.84985 1.23061 1.04894 0.96809 0.94070 1.22772 0.96762 1.03130 0.98485 1.22852 0.93362 1.01228 1.03367 0.94555 0.79349 0.92912 0.89940 0.75395 0.77550 0.83663 0.81793 0.82174 0.82836 0.85768 0.76926 0.86579 0.90462 0.89185 0.88098 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.74 13.06 21.65 0.28 -55.46 16 2 C -0.07 -3.54 5.50 84.86 0.47 -3.07 16 3 Si 0.95 44.36 29.55 68.60 2.03 46.39 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 7 C -0.21 -10.40 8.15 84.04 0.69 -9.71 16 8 H 0.08 3.66 6.91 -2.91 -0.02 3.64 16 9 N -0.72 -31.51 3.08 -322.94 -0.99 -32.50 16 10 C 0.19 6.68 2.86 44.99 0.13 6.81 16 11 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 12 C 0.13 4.22 5.22 86.38 0.45 4.67 16 13 N -0.70 -23.16 5.38 -466.37 -2.51 -25.67 16 14 C 0.59 20.19 7.81 86.66 0.68 20.87 16 15 O -0.59 -22.71 16.90 -4.04 -0.07 -22.78 16 16 C -0.29 -8.94 6.13 -20.14 -0.12 -9.07 16 17 C 0.10 2.82 11.50 85.65 0.99 3.81 16 18 N -0.31 -9.56 11.77 -56.24 -0.66 -10.23 16 19 N -0.31 -8.34 3.77 -186.21 -0.70 -9.04 16 20 C 0.12 2.62 6.68 38.10 0.25 2.87 16 21 C -0.14 -2.26 9.45 22.39 0.21 -2.05 16 22 C -0.09 -0.98 10.04 22.25 0.22 -0.76 16 23 C -0.12 -1.20 10.04 22.29 0.22 -0.98 16 24 C -0.10 -1.34 10.04 22.25 0.22 -1.12 16 25 C -0.13 -2.73 9.65 22.39 0.22 -2.51 16 26 C 0.13 3.38 10.60 84.24 0.89 4.28 16 27 C -0.17 -5.38 5.70 -10.80 -0.06 -5.44 16 28 C -0.17 -6.28 9.74 30.62 0.30 -5.98 16 29 C -0.17 -5.69 9.87 30.62 0.30 -5.39 16 30 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.37 18.48 7.80 -92.71 -0.72 17.76 16 32 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.41 13.48 7.09 -92.71 -0.66 12.82 16 35 H 0.21 5.52 7.50 -2.91 -0.02 5.50 16 36 H 0.15 1.81 6.71 -2.91 -0.02 1.79 16 37 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 39 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.12 2.82 7.68 -2.91 -0.02 2.79 16 41 H 0.21 4.26 7.01 -2.91 -0.02 4.24 16 42 H 0.12 3.12 8.11 -2.38 -0.02 3.10 16 43 H 0.08 3.49 6.68 -2.39 -0.02 3.48 16 44 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 45 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 46 H 0.08 3.02 6.22 -2.39 -0.01 3.00 16 Total: -1.00 -67.53 388.68 3.08 -64.45 By element: Atomic # 1 Polarization: 47.95 SS G_CDS: -0.35 Total: 47.60 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 6.05 Total: -2.76 kcal Atomic # 7 Polarization: -128.31 SS G_CDS: -4.58 Total: -132.90 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.07 Total: -22.78 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -67.53 3.08 -64.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566716207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.602 kcal (2) G-P(sol) polarization free energy of solvation -67.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds