Wall clock time and date at job start Sat Apr 11 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00400 * 2 1 4 4 H 1.48500 * 109.47075 * 240.00427 * 3 2 1 5 5 H 1.48499 * 109.46647 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47328 * 120.00244 * 3 2 1 7 7 C 1.38814 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00010 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99900 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00004 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47409 * 180.02562 * 10 9 7 12 12 H 1.09008 * 110.91513 * 57.44554 * 11 10 9 13 13 C 1.55156 * 111.00568 * 181.34640 * 11 10 9 14 14 C 1.54324 * 102.94054 * 153.57718 * 13 11 10 15 15 N 1.47027 * 107.27007 * 337.80771 * 14 13 11 16 16 C 1.34776 * 125.64499 * 178.96216 * 15 14 13 17 17 O 1.21687 * 120.00177 * 174.95731 * 16 15 14 18 18 C 1.46708 * 120.00156 * 354.95453 * 16 15 14 19 19 C 1.36702 * 126.85542 * 5.09965 * 18 16 15 20 20 N 1.33318 * 107.83925 * 179.86922 * 19 18 16 21 21 C 1.30867 * 109.73956 * 0.39972 * 20 19 18 22 22 N 1.34746 * 109.13493 * 359.75173 * 21 20 19 23 23 C 1.40114 * 126.49954 * 179.97438 * 22 21 20 24 24 C 1.38843 * 120.06547 * 123.28458 * 23 22 21 25 25 C 1.38121 * 119.92879 * 179.67513 * 24 23 22 26 26 C 1.38274 * 120.06906 * 0.61647 * 25 24 23 27 27 C 1.38279 * 120.13479 * 359.67822 * 26 25 24 28 28 C 1.38120 * 120.06952 * 0.02562 * 27 26 25 29 29 C 1.47424 * 108.70468 * 358.94146 * 15 14 13 30 30 H 0.97006 * 119.99714 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00202 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47207 * 60.00138 * 10 9 7 33 33 H 1.09005 * 109.47139 * 300.00281 * 10 9 7 34 34 H 1.09003 * 110.71609 * 35.21712 * 13 11 10 35 35 H 1.08997 * 110.87576 * 272.01016 * 13 11 10 36 36 H 1.08998 * 109.88128 * 218.39302 * 14 13 11 37 37 H 1.08998 * 109.88285 * 97.22882 * 14 13 11 38 38 H 1.08007 * 126.07653 * 359.97438 * 19 18 16 39 39 H 1.07998 * 125.43206 * 179.72890 * 21 20 19 40 40 H 1.08006 * 120.03632 * 359.96502 * 24 23 22 41 41 H 1.08007 * 119.96268 * 180.31996 * 25 24 23 42 42 H 1.08004 * 119.93335 * 179.69829 * 26 25 24 43 43 H 1.08007 * 119.96447 * 180.02562 * 27 26 25 44 44 H 1.08000 * 120.03407 * 180.02562 * 28 27 26 45 45 H 1.08994 * 110.36594 * 142.96434 * 29 15 14 46 46 H 1.09001 * 110.36602 * 265.28748 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.3946 -4.7593 -0.8597 13 6 1.8028 -6.1835 0.0328 14 6 0.7713 -7.1192 0.6976 15 7 -0.1568 -6.2730 1.4619 16 6 -1.2160 -6.7107 2.1712 17 8 -1.8642 -5.9290 2.8417 18 6 -1.5874 -8.1295 2.1350 19 6 -0.9076 -9.1394 1.5132 20 7 -1.5776 -10.2727 1.7234 21 6 -2.6470 -10.0280 2.4370 22 7 -2.6986 -8.7113 2.7182 23 6 -3.6900 -8.0558 3.4603 24 6 -3.3436 -7.3162 4.5832 25 6 -4.3225 -6.6657 5.3087 26 6 -5.6476 -6.7608 4.9252 27 6 -5.9963 -7.5016 3.8109 28 6 -5.0214 -8.1494 3.0777 29 6 0.2632 -4.8666 1.3242 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6845 -3.7146 0.8894 33 1 2.6846 -3.7146 -0.8905 34 1 2.7080 -6.1165 0.6365 35 1 2.0379 -6.5231 -0.9758 36 1 1.2782 -7.8130 1.3682 37 1 0.2252 -7.6718 -0.0670 38 1 0.0101 -9.0376 0.9529 39 1 -3.3726 -10.7641 2.7501 40 1 -2.3094 -7.2458 4.8863 41 1 -4.0531 -6.0860 6.1793 42 1 -6.4117 -6.2552 5.4970 43 1 -7.0322 -7.5737 3.5136 44 1 -5.2944 -8.7275 2.2073 45 1 -0.6081 -4.2146 1.2644 46 1 0.8982 -4.5767 2.1614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567127343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:45 Heat of formation + Delta-G solvation = 87.760082 kcal Electronic energy + Delta-G solvation = -28855.204913 eV Core-core repulsion = 24939.816794 eV Total energy + Delta-G solvation = -3915.388120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.72357 -39.79787 -39.27965 -37.53483 -34.83360 -34.28183 -32.43803 -31.36988 -30.67830 -30.17896 -29.66945 -28.46385 -25.69229 -24.28646 -23.55239 -23.17260 -22.29550 -21.79063 -21.29561 -20.04235 -19.75889 -18.17800 -17.13758 -16.80472 -16.56288 -16.32222 -16.05733 -15.40771 -15.17965 -14.83385 -14.54768 -14.17595 -14.14888 -13.96028 -13.76321 -13.69994 -13.31555 -13.19740 -13.06220 -12.76184 -12.56057 -12.14723 -11.96429 -11.67322 -11.58557 -11.28121 -10.85934 -10.82138 -10.65504 -10.62675 -10.45475 -10.38787 -10.06010 -9.90912 -9.67702 -9.25698 -9.05342 -8.87903 -8.83659 -8.59419 -6.93335 -5.75632 -3.05242 0.61649 1.05764 1.28860 2.14803 2.60367 3.05163 3.22102 3.39219 3.44766 3.48940 3.50273 4.21868 4.30112 4.52295 4.56920 4.59079 4.59689 4.74393 4.79582 4.85105 4.94628 5.01387 5.05176 5.16334 5.28665 5.39472 5.40013 5.56414 5.57848 5.60927 5.68661 5.86237 5.92964 5.98631 5.99863 6.06137 6.08685 6.16413 6.20207 6.24057 6.36716 6.41396 6.47070 6.67342 6.80750 6.93569 7.46035 7.56089 7.69492 8.10867 8.42448 9.53670 10.10378 10.44615 11.46911 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.002701 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.936560 B =10364.440108 C =12186.277457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.106 4.106 12 H 0.085 0.915 13 C -0.126 4.126 14 C 0.090 3.910 15 N -0.604 5.604 16 C 0.599 3.401 17 O -0.532 6.532 18 C -0.071 4.071 19 C 0.026 3.974 20 N -0.492 5.492 21 C 0.212 3.788 22 N -0.382 5.382 23 C 0.104 3.896 24 C -0.063 4.063 25 C -0.107 4.107 26 C -0.106 4.106 27 C -0.113 4.113 28 C -0.108 4.108 29 C 0.122 3.878 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.023 0.977 33 H 0.025 0.975 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.192 0.808 39 H 0.213 0.787 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.128 0.872 45 H 0.084 0.916 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.042 -22.891 7.148 25.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.104 0.896 13 C -0.164 4.164 14 C -0.032 4.032 15 N -0.338 5.338 16 C 0.387 3.613 17 O -0.410 6.410 18 C -0.186 4.186 19 C -0.127 4.127 20 N -0.210 5.210 21 C -0.069 4.069 22 N -0.060 5.060 23 C 0.014 3.986 24 C -0.082 4.082 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.132 4.132 28 C -0.128 4.128 29 C 0.000 4.000 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.209 0.791 39 H 0.230 0.770 40 H 0.145 0.855 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.150 0.850 44 H 0.146 0.854 45 H 0.103 0.897 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.190 -23.064 7.341 25.552 hybrid contribution -0.061 1.694 0.176 1.704 sum -8.251 -21.370 7.516 24.109 Atomic orbital electron populations 1.69654 1.05117 1.25816 1.57425 1.24753 0.95510 0.97722 1.02883 0.86265 0.78513 0.83548 0.77826 1.21268 1.21700 1.21257 1.19163 0.90987 0.84125 1.43101 0.91192 1.42361 1.05899 0.99934 1.89580 1.20590 0.92690 0.84735 0.98277 1.22603 0.97870 0.94879 0.97164 0.89618 1.22684 0.97702 0.94532 1.01475 1.22450 0.91309 0.94307 0.95177 1.48159 1.26929 1.09628 1.49047 1.16318 0.79997 0.85089 0.79882 1.90880 1.52354 1.56521 1.41216 1.20902 0.93585 0.95555 1.08544 1.23368 1.01105 0.87204 1.01001 1.70218 1.05695 1.28161 1.16889 1.25289 0.99049 0.83181 0.99344 1.42685 1.17520 1.08046 1.37736 1.17626 0.87173 1.00161 0.93658 1.21027 1.00338 0.94538 0.92338 1.21076 0.92501 0.98789 1.00231 1.21317 0.96493 0.97858 0.96694 1.20999 0.99241 0.97519 0.95442 1.21033 0.90888 1.00769 1.00065 1.22360 0.99700 0.80049 0.97845 0.93423 0.78212 0.95969 0.95696 0.90074 0.89672 0.90847 0.90741 0.79120 0.77049 0.85513 0.85020 0.85303 0.85048 0.85384 0.89727 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.30 5.45 -59.90 -0.33 -18.62 16 10 C 0.17 3.14 5.71 -4.04 -0.02 3.11 16 11 C -0.11 -1.60 3.10 -88.47 -0.27 -1.87 16 12 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 13 C -0.13 -1.35 6.42 -24.90 -0.16 -1.51 16 14 C 0.09 0.94 5.00 -3.06 -0.02 0.92 16 15 N -0.60 -8.66 3.33 -172.05 -0.57 -9.23 16 16 C 0.60 9.50 7.80 -12.84 -0.10 9.40 16 17 O -0.53 -10.05 14.15 5.20 0.07 -9.98 16 18 C -0.07 -0.96 6.76 -82.07 -0.55 -1.52 16 19 C 0.03 0.30 10.37 -17.46 -0.18 0.12 16 20 N -0.49 -5.90 11.20 -14.36 -0.16 -6.06 16 21 C 0.21 2.18 12.32 -90.34 -1.11 1.07 16 22 N -0.38 -4.67 2.85 -58.64 -0.17 -4.83 16 23 C 0.10 1.24 5.37 -83.62 -0.45 0.79 16 24 C -0.06 -0.77 7.75 -39.40 -0.31 -1.08 16 25 C -0.11 -1.10 10.04 -39.61 -0.40 -1.50 16 26 C -0.11 -0.92 10.04 -39.55 -0.40 -1.32 16 27 C -0.11 -0.96 10.04 -39.61 -0.40 -1.36 16 28 C -0.11 -1.06 9.79 -39.40 -0.39 -1.45 16 29 C 0.12 2.00 6.06 -2.53 -0.02 1.99 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.38 10.18 7.53 -40.82 -0.31 9.87 16 32 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.63 7.19 -51.93 -0.37 0.26 16 37 H 0.07 0.68 6.71 -51.93 -0.35 0.33 16 38 H 0.19 1.78 4.45 -52.48 -0.23 1.54 16 39 H 0.21 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.13 1.67 7.72 -52.48 -0.40 1.26 16 41 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 46 H 0.07 1.29 8.00 -51.93 -0.42 0.87 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -35.04 379.67 -11.02 -46.06 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.27 Total: 8.75 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -5.02 Total: -1.57 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: -0.50 Total: -66.44 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.04 -11.02 -46.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567127343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.818 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds