Wall clock time and date at job start Sat Apr 11 2020 06:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00400 * 2 1 4 4 H 1.48500 * 109.47075 * 240.00427 * 3 2 1 5 5 H 1.48499 * 109.46647 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47328 * 120.00244 * 3 2 1 7 7 C 1.38814 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00010 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99900 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00004 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47409 * 180.02562 * 10 9 7 12 12 H 1.09008 * 110.91513 * 57.44554 * 11 10 9 13 13 C 1.55156 * 111.00568 * 181.34640 * 11 10 9 14 14 C 1.54324 * 102.94054 * 153.57718 * 13 11 10 15 15 N 1.47027 * 107.27007 * 337.80771 * 14 13 11 16 16 C 1.34776 * 125.64499 * 178.96216 * 15 14 13 17 17 O 1.21687 * 120.00177 * 174.95731 * 16 15 14 18 18 C 1.46708 * 120.00156 * 354.95453 * 16 15 14 19 19 C 1.36702 * 126.85542 * 5.09965 * 18 16 15 20 20 N 1.33318 * 107.83925 * 179.86922 * 19 18 16 21 21 C 1.30867 * 109.73956 * 0.39972 * 20 19 18 22 22 N 1.34746 * 109.13493 * 359.75173 * 21 20 19 23 23 C 1.40114 * 126.49954 * 179.97438 * 22 21 20 24 24 C 1.38843 * 120.06547 * 123.28458 * 23 22 21 25 25 C 1.38121 * 119.92879 * 179.67513 * 24 23 22 26 26 C 1.38274 * 120.06906 * 0.61647 * 25 24 23 27 27 C 1.38279 * 120.13479 * 359.67822 * 26 25 24 28 28 C 1.38120 * 120.06952 * 0.02562 * 27 26 25 29 29 C 1.47424 * 108.70468 * 358.94146 * 15 14 13 30 30 H 0.97006 * 119.99714 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00202 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47207 * 60.00138 * 10 9 7 33 33 H 1.09005 * 109.47139 * 300.00281 * 10 9 7 34 34 H 1.09003 * 110.71609 * 35.21712 * 13 11 10 35 35 H 1.08997 * 110.87576 * 272.01016 * 13 11 10 36 36 H 1.08998 * 109.88128 * 218.39302 * 14 13 11 37 37 H 1.08998 * 109.88285 * 97.22882 * 14 13 11 38 38 H 1.08007 * 126.07653 * 359.97438 * 19 18 16 39 39 H 1.07998 * 125.43206 * 179.72890 * 21 20 19 40 40 H 1.08006 * 120.03632 * 359.96502 * 24 23 22 41 41 H 1.08007 * 119.96268 * 180.31996 * 25 24 23 42 42 H 1.08004 * 119.93335 * 179.69829 * 26 25 24 43 43 H 1.08007 * 119.96447 * 180.02562 * 27 26 25 44 44 H 1.08000 * 120.03407 * 180.02562 * 28 27 26 45 45 H 1.08994 * 110.36594 * 142.96434 * 29 15 14 46 46 H 1.09001 * 110.36602 * 265.28748 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.3946 -4.7593 -0.8597 13 6 1.8028 -6.1835 0.0328 14 6 0.7713 -7.1192 0.6976 15 7 -0.1568 -6.2730 1.4619 16 6 -1.2160 -6.7107 2.1712 17 8 -1.8642 -5.9290 2.8417 18 6 -1.5874 -8.1295 2.1350 19 6 -0.9076 -9.1394 1.5132 20 7 -1.5776 -10.2727 1.7234 21 6 -2.6470 -10.0280 2.4370 22 7 -2.6986 -8.7113 2.7182 23 6 -3.6900 -8.0558 3.4603 24 6 -3.3436 -7.3162 4.5832 25 6 -4.3225 -6.6657 5.3087 26 6 -5.6476 -6.7608 4.9252 27 6 -5.9963 -7.5016 3.8109 28 6 -5.0214 -8.1494 3.0777 29 6 0.2632 -4.8666 1.3242 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6845 -3.7146 0.8894 33 1 2.6846 -3.7146 -0.8905 34 1 2.7080 -6.1165 0.6365 35 1 2.0379 -6.5231 -0.9758 36 1 1.2782 -7.8130 1.3682 37 1 0.2252 -7.6718 -0.0670 38 1 0.0101 -9.0376 0.9529 39 1 -3.3726 -10.7641 2.7501 40 1 -2.3094 -7.2458 4.8863 41 1 -4.0531 -6.0860 6.1793 42 1 -6.4117 -6.2552 5.4970 43 1 -7.0322 -7.5737 3.5136 44 1 -5.2944 -8.7275 2.2073 45 1 -0.6081 -4.2146 1.2644 46 1 0.8982 -4.5767 2.1614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567127343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:44 Heat of formation + Delta-G solvation = 66.866904 kcal Electronic energy + Delta-G solvation = -28856.110909 eV Core-core repulsion = 24939.816794 eV Total energy + Delta-G solvation = -3916.294116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.60767 -40.94725 -40.04692 -38.78539 -36.50811 -35.20421 -34.04504 -32.31381 -32.09617 -31.18578 -30.51632 -29.74160 -27.20971 -25.68309 -24.53351 -24.06587 -23.68361 -22.74457 -22.23279 -21.32978 -20.70828 -19.34973 -18.86784 -17.90583 -17.49810 -17.30857 -17.06173 -16.67453 -16.36021 -16.00550 -15.81314 -15.31209 -15.15515 -15.15402 -14.91962 -14.71554 -14.64855 -14.49586 -14.04208 -13.94515 -13.81329 -13.43491 -13.11635 -12.91533 -12.70618 -12.64849 -12.33747 -12.26568 -12.14621 -11.85852 -11.78336 -11.63264 -11.57878 -11.26524 -11.03163 -10.92706 -10.04610 -9.98447 -9.72466 -9.65208 -9.00216 -7.94824 -5.24145 -0.21684 0.29133 0.40030 1.24056 1.46605 1.50130 1.56134 1.70215 2.00950 2.15257 2.55968 2.63620 3.23271 3.38966 3.52088 3.63367 3.66145 3.78920 3.84458 3.88024 3.91033 4.12780 4.15784 4.19941 4.26118 4.36065 4.38703 4.44395 4.53437 4.63173 4.67323 4.76875 4.79209 4.83807 4.92334 5.01932 5.05916 5.15588 5.23430 5.28198 5.31461 5.35360 5.42056 5.43625 5.50015 5.75042 6.12431 6.26627 6.34457 6.67199 6.95340 7.32779 8.09372 8.30672 9.28666 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.002701 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.936560 B =10364.440108 C =12186.277457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.163 3.837 11 C -0.097 4.097 12 H 0.078 0.922 13 C -0.111 4.111 14 C 0.086 3.914 15 N -0.604 5.604 16 C 0.591 3.409 17 O -0.578 6.578 18 C -0.105 4.105 19 C 0.043 3.957 20 N -0.512 5.512 21 C 0.228 3.772 22 N -0.387 5.387 23 C 0.083 3.917 24 C -0.087 4.087 25 C -0.122 4.122 26 C -0.105 4.105 27 C -0.110 4.110 28 C -0.112 4.112 29 C 0.128 3.872 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.027 0.973 33 H 0.037 0.963 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.216 0.784 39 H 0.251 0.749 40 H 0.102 0.898 41 H 0.140 0.860 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.147 0.853 45 H 0.042 0.958 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.684 -25.242 6.395 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.037 3.963 11 C -0.116 4.116 12 H 0.096 0.904 13 C -0.149 4.149 14 C -0.035 4.035 15 N -0.336 5.336 16 C 0.381 3.619 17 O -0.459 6.459 18 C -0.219 4.219 19 C -0.110 4.110 20 N -0.229 5.229 21 C -0.052 4.052 22 N -0.065 5.065 23 C -0.007 4.007 24 C -0.107 4.107 25 C -0.140 4.140 26 C -0.123 4.123 27 C -0.128 4.128 28 C -0.131 4.131 29 C 0.005 3.995 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.232 0.768 39 H 0.267 0.733 40 H 0.120 0.880 41 H 0.158 0.842 42 H 0.175 0.825 43 H 0.182 0.818 44 H 0.164 0.836 45 H 0.061 0.939 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.766 -25.471 6.571 27.427 hybrid contribution -0.191 2.333 0.452 2.384 sum -7.958 -23.138 7.023 25.456 Atomic orbital electron populations 1.69834 1.06786 1.26078 1.59600 1.25616 0.96350 1.01323 1.03798 0.85191 0.77142 0.79018 0.78294 1.20046 1.22437 1.20393 1.19638 0.91635 0.85300 1.41072 0.90211 1.42633 1.05600 1.01453 1.89488 1.20780 0.93291 0.83623 0.98606 1.22424 0.97264 0.96208 0.95722 0.90351 1.22707 0.97478 0.91073 1.03614 1.22768 0.90802 0.94146 0.95811 1.48185 1.27262 1.09100 1.49057 1.16758 0.79779 0.86036 0.79285 1.90844 1.53932 1.57894 1.43212 1.20700 0.95432 0.94569 1.11171 1.23747 1.01178 0.86449 0.99601 1.70296 1.06515 1.28071 1.18045 1.26107 0.98823 0.82970 0.97303 1.42818 1.17367 1.08624 1.37678 1.17857 0.88068 1.00958 0.93788 1.20989 0.99653 0.96281 0.93732 1.21315 0.93211 0.98860 1.00617 1.21688 0.96232 0.97463 0.96929 1.21438 1.00550 0.96181 0.94670 1.21318 0.90111 1.00966 1.00697 1.22065 0.97925 0.81121 0.98350 0.94137 0.79731 0.95533 0.94484 0.88892 0.86652 0.88213 0.88661 0.76818 0.73312 0.87995 0.84184 0.82510 0.81835 0.83569 0.93921 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.24 13.06 21.65 0.28 -60.96 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 3 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.75 -38.23 5.45 -343.44 -1.87 -40.11 16 10 C 0.16 6.14 5.71 86.38 0.49 6.64 16 11 C -0.10 -2.89 3.10 -9.40 -0.03 -2.92 16 12 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 13 C -0.11 -2.05 6.42 31.78 0.20 -1.85 16 14 C 0.09 1.57 5.00 86.73 0.43 2.01 16 15 N -0.60 -17.53 3.33 -816.46 -2.72 -20.24 16 16 C 0.59 19.57 7.80 86.46 0.67 20.25 16 17 O -0.58 -23.61 14.15 -4.31 -0.06 -23.67 16 18 C -0.10 -2.83 6.76 39.97 0.27 -2.56 16 19 C 0.04 0.94 10.37 84.11 0.87 1.81 16 20 N -0.51 -11.11 11.20 -199.34 -2.23 -13.34 16 21 C 0.23 4.27 12.32 180.25 2.22 6.49 16 22 N -0.39 -9.33 2.85 -339.43 -0.97 -10.30 16 23 C 0.08 2.01 5.37 38.11 0.20 2.21 16 24 C -0.09 -2.29 7.75 22.39 0.17 -2.11 16 25 C -0.12 -2.59 10.04 22.25 0.22 -2.37 16 26 C -0.11 -1.72 10.04 22.29 0.22 -1.50 16 27 C -0.11 -1.66 10.04 22.25 0.22 -1.44 16 28 C -0.11 -2.06 9.79 22.39 0.22 -1.84 16 29 C 0.13 4.43 6.06 86.85 0.53 4.96 16 30 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 31 H 0.37 20.62 7.53 -92.71 -0.70 19.92 16 32 H 0.03 0.99 8.10 -2.39 -0.02 0.97 16 33 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.09 1.56 8.04 -2.39 -0.02 1.54 16 35 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 1.37 7.19 -2.39 -0.02 1.36 16 37 H 0.10 1.41 6.71 -2.39 -0.02 1.39 16 38 H 0.22 3.29 4.45 -2.91 -0.01 3.28 16 39 H 0.25 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.10 3.05 7.72 -2.91 -0.02 3.03 16 41 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 42 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 44 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 45 H 0.04 1.81 8.09 -2.39 -0.02 1.79 16 46 H 0.06 2.23 8.00 -2.39 -0.02 2.21 16 Total: -1.00 -80.51 379.67 3.01 -77.50 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.31 Total: 31.61 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 8.24 Total: 10.72 kcal Atomic # 7 Polarization: -137.44 SS G_CDS: -7.50 Total: -144.95 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.06 Total: -23.67 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -80.51 3.01 -77.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567127343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.369 kcal (2) G-P(sol) polarization free energy of solvation -80.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds