Wall clock time and date at job start Sat Apr 11 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99995 * 2 1 4 4 H 1.48505 * 109.47009 * 269.99905 * 3 2 1 5 5 H 1.48503 * 109.46914 * 29.99745 * 3 2 1 6 6 H 1.48495 * 109.47431 * 149.99865 * 3 2 1 7 7 C 1.38813 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99678 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00237 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00261 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47235 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.88651 * 308.88127 * 11 10 9 13 13 C 1.55156 * 111.00379 * 184.99864 * 11 10 9 14 14 C 1.54321 * 102.94517 * 206.42527 * 13 11 10 15 15 N 1.47022 * 107.26800 * 22.19260 * 14 13 11 16 16 C 1.34781 * 125.64744 * 181.01960 * 15 14 13 17 17 O 1.21553 * 120.00008 * 185.24300 * 16 15 14 18 18 C 1.47860 * 119.99780 * 4.96931 * 16 15 14 19 19 C 1.39621 * 120.10894 * 172.32928 * 18 16 15 20 20 C 1.37978 * 119.98622 * 180.02562 * 19 18 16 21 21 C 1.38264 * 120.21573 * 0.02562 * 20 19 18 22 22 C 1.38920 * 120.22843 * 359.97438 * 21 20 19 23 23 N 1.40214 * 119.99619 * 179.97438 * 22 21 20 24 24 C 1.35223 * 126.04911 * 5.00129 * 23 22 21 25 25 C 1.35323 * 107.70865 * 179.97438 * 24 23 22 26 26 C 1.39914 * 107.93082 * 0.02562 * 25 24 23 27 27 N 1.30870 * 108.24575 * 359.71985 * 26 25 24 28 28 C 1.38600 * 120.00869 * 359.72667 * 22 21 20 29 29 C 1.47421 * 108.70405 * 1.28992 * 15 14 13 30 30 H 0.97003 * 119.99818 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00405 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46582 * 60.00280 * 10 9 7 33 33 H 1.08994 * 109.47016 * 300.00342 * 10 9 7 34 34 H 1.09001 * 110.71673 * 88.06225 * 13 11 10 35 35 H 1.08996 * 110.87550 * 324.86297 * 13 11 10 36 36 H 1.09004 * 109.88313 * 262.78299 * 14 13 11 37 37 H 1.08992 * 109.88204 * 141.61459 * 14 13 11 38 38 H 1.07999 * 120.00791 * 0.02562 * 19 18 16 39 39 H 1.07996 * 119.89421 * 179.97438 * 20 19 18 40 40 H 1.08007 * 119.88428 * 180.02562 * 21 20 19 41 41 H 1.07999 * 126.14656 * 0.02562 * 24 23 22 42 42 H 1.07999 * 126.03453 * 179.97438 * 25 24 23 43 43 H 1.08005 * 125.87660 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.11202 * 180.27695 * 28 22 21 45 45 H 1.09003 * 110.36875 * 94.48031 * 29 15 14 46 46 H 1.09005 * 110.36752 * 216.79998 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3259 -4.6995 0.7942 13 6 1.7993 -6.1801 0.1274 14 6 0.8247 -7.1644 -0.5527 15 7 -0.0334 -6.3782 -1.4511 16 6 -1.0303 -6.8690 -2.2140 17 8 -1.6145 -6.1411 -2.9927 18 6 -1.4091 -8.2943 -2.1080 19 6 -2.5402 -8.7698 -2.7743 20 6 -2.8917 -10.1002 -2.6732 21 6 -2.1274 -10.9660 -1.9130 22 6 -1.0002 -10.5025 -1.2463 23 7 -0.2290 -11.3847 -0.4763 24 6 -0.4124 -12.7205 -0.3739 25 6 0.5364 -13.2034 0.4614 26 6 1.3257 -12.1283 0.8843 27 7 0.8714 -11.0391 0.3187 28 6 -0.6350 -9.1692 -1.3463 29 6 0.3813 -4.9651 -1.3842 30 1 -0.4850 0.8401 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 2.6848 -3.7145 0.8906 33 1 2.6848 -3.7145 -0.8894 34 1 1.9453 -6.4437 1.1749 35 1 2.7533 -6.1562 -0.3993 36 1 0.2145 -7.6622 0.2010 37 1 1.3842 -7.9029 -1.1267 38 1 -3.1399 -8.0964 -3.3687 39 1 -3.7671 -10.4663 -3.1889 40 1 -2.4072 -12.0065 -1.8379 41 1 -1.1780 -13.2983 -0.8703 42 1 0.6618 -14.2363 0.7512 43 1 2.1677 -12.1878 1.5581 44 1 0.2435 -8.8081 -0.8324 45 1 1.0873 -4.7387 -2.1832 46 1 -0.4884 -4.3110 -1.4487 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567145773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:47 Heat of formation + Delta-G solvation = 95.534590 kcal Electronic energy + Delta-G solvation = -28465.702958 eV Core-core repulsion = 24550.651966 eV Total energy + Delta-G solvation = -3915.050992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.51678 -41.63708 -39.73573 -38.81227 -36.55897 -34.55138 -34.22045 -32.75190 -31.92748 -31.11246 -30.24427 -29.81489 -27.38512 -25.92764 -24.56158 -24.38911 -23.32272 -22.34707 -21.55166 -21.40707 -20.77305 -19.29033 -18.83696 -18.03355 -17.57780 -17.20791 -16.84894 -16.61137 -16.23043 -16.02553 -15.74927 -15.40879 -15.24462 -15.20620 -14.85249 -14.73197 -14.37339 -14.20736 -14.06290 -13.65780 -13.61603 -13.55401 -13.20786 -13.10500 -12.82195 -12.77517 -12.56367 -12.17398 -12.08068 -11.86780 -11.71595 -11.70163 -11.47679 -11.39084 -11.15198 -10.94866 -10.22182 -10.13080 -9.87164 -9.09812 -9.01671 -7.95750 -5.25314 -0.44032 -0.10001 1.10010 1.38316 1.46143 1.48678 1.56990 1.68800 1.76603 1.90949 2.55181 2.69077 3.11778 3.36873 3.43898 3.46210 3.69991 3.76524 3.83004 3.93664 4.03825 4.07781 4.10566 4.16051 4.24293 4.31326 4.32240 4.45368 4.56021 4.66408 4.71788 4.74026 4.77319 4.80925 4.92798 4.97040 5.03482 5.07841 5.10768 5.16727 5.18502 5.28639 5.35769 5.49134 5.51995 5.74031 6.16907 6.25760 6.30079 6.66655 6.88170 7.31777 8.07465 8.29535 9.28012 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017932 B = 0.002291 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.099143 B =12216.539965 C =13583.425544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.243 4.243 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.165 3.835 11 C -0.095 4.095 12 H 0.078 0.922 13 C -0.113 4.113 14 C 0.096 3.904 15 N -0.611 5.611 16 C 0.560 3.440 17 O -0.581 6.581 18 C -0.123 4.123 19 C -0.084 4.084 20 C -0.086 4.086 21 C -0.105 4.105 22 C 0.140 3.860 23 N -0.338 5.338 24 C 0.048 3.952 25 C -0.265 4.265 26 C 0.052 3.948 27 N -0.334 5.334 28 C -0.137 4.137 29 C 0.119 3.881 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.038 0.962 33 H 0.027 0.973 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.179 0.821 40 H 0.174 0.826 41 H 0.213 0.787 42 H 0.180 0.820 43 H 0.214 0.786 44 H 0.175 0.825 45 H 0.065 0.935 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 -35.798 -0.249 35.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.805 3.195 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.391 5.391 10 C 0.038 3.962 11 C -0.115 4.115 12 H 0.096 0.904 13 C -0.151 4.151 14 C -0.025 4.025 15 N -0.342 5.342 16 C 0.351 3.649 17 O -0.462 6.462 18 C -0.127 4.127 19 C -0.104 4.104 20 C -0.104 4.104 21 C -0.126 4.126 22 C 0.048 3.952 23 N -0.114 5.114 24 C -0.093 4.093 25 C -0.293 4.293 26 C -0.134 4.134 27 N -0.153 5.153 28 C -0.156 4.156 29 C -0.003 4.003 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.129 0.871 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.152 0.848 39 H 0.196 0.804 40 H 0.191 0.809 41 H 0.229 0.771 42 H 0.198 0.802 43 H 0.231 0.769 44 H 0.192 0.808 45 H 0.083 0.917 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.229 -34.069 -0.835 34.101 hybrid contribution -0.240 0.807 -0.053 0.844 sum -1.469 -33.262 -0.888 33.306 Atomic orbital electron populations 1.69842 1.06792 1.26055 1.59636 1.25642 0.96403 1.01387 1.03806 0.85098 0.77783 0.79268 0.77363 1.21588 1.22288 1.18991 1.19666 0.91640 0.85237 1.40969 0.90197 1.42632 1.05604 1.01401 1.89469 1.20755 0.93216 0.83601 0.98621 1.22448 0.97959 0.95809 0.95249 0.90377 1.22733 0.98121 0.90962 1.03274 1.22686 0.92506 0.94569 0.92777 1.48538 1.32856 1.09823 1.43016 1.18493 0.78696 0.88185 0.79483 1.90764 1.55212 1.61256 1.38983 1.19630 0.99034 0.91467 1.02539 1.21524 0.94651 0.97343 0.96869 1.21335 1.00405 0.91019 0.97659 1.21465 0.92183 1.02674 0.96284 1.17625 0.92942 0.89161 0.95466 1.45981 1.23691 1.06031 1.35693 1.23343 1.02086 0.83339 1.00578 1.22033 0.99587 1.01983 1.05653 1.24697 1.00385 0.89848 0.98489 1.77428 1.01221 1.25537 1.11087 1.22473 1.02213 0.92043 0.98895 1.22221 0.98635 0.81164 0.98295 0.94094 0.79695 0.94441 0.95543 0.87150 0.88706 0.89524 0.89003 0.84816 0.80406 0.80886 0.77063 0.80231 0.76947 0.80847 0.91671 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.84 13.06 21.65 0.28 -61.56 16 2 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 3 Si 0.98 47.32 29.55 68.60 2.03 49.34 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.24 -13.86 9.99 84.04 0.84 -13.03 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 9 N -0.75 -38.98 5.55 -343.45 -1.91 -40.89 16 10 C 0.16 6.45 5.72 86.38 0.49 6.94 16 11 C -0.10 -3.07 3.06 -9.33 -0.03 -3.10 16 12 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 13 C -0.11 -2.52 6.41 31.78 0.20 -2.32 16 14 C 0.10 2.21 4.87 86.73 0.42 2.64 16 15 N -0.61 -19.24 3.32 -825.92 -2.75 -21.98 16 16 C 0.56 19.13 7.81 86.79 0.68 19.81 16 17 O -0.58 -24.54 16.67 -3.88 -0.06 -24.61 16 18 C -0.12 -3.21 5.87 -20.10 -0.12 -3.33 16 19 C -0.08 -1.78 9.59 22.54 0.22 -1.56 16 20 C -0.09 -1.07 10.02 22.21 0.22 -0.84 16 21 C -0.11 -1.21 9.45 22.44 0.21 -0.99 16 22 C 0.14 2.51 6.67 38.05 0.25 2.77 16 23 N -0.34 -5.73 3.80 -187.85 -0.71 -6.44 16 24 C 0.05 0.48 10.79 83.50 0.90 1.39 16 25 C -0.26 -2.49 10.81 22.00 0.24 -2.25 16 26 C 0.05 0.68 12.02 85.24 1.03 1.70 16 27 N -0.33 -6.40 11.87 -56.97 -0.68 -7.08 16 28 C -0.14 -3.06 8.21 22.65 0.19 -2.87 16 29 C 0.12 4.33 6.31 86.93 0.55 4.87 16 30 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.37 20.97 7.67 -92.71 -0.71 20.26 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.03 1.03 7.96 -2.39 -0.02 1.02 16 34 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.09 1.90 8.04 -2.39 -0.02 1.89 16 36 H 0.09 1.89 6.69 -2.39 -0.02 1.88 16 37 H 0.09 1.89 6.78 -2.39 -0.02 1.87 16 38 H 0.13 2.99 7.67 -2.91 -0.02 2.97 16 39 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 40 H 0.17 0.53 6.75 -2.91 -0.02 0.51 16 41 H 0.21 0.31 7.06 -2.91 -0.02 0.29 16 42 H 0.18 0.62 8.06 -2.91 -0.02 0.59 16 43 H 0.21 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.17 3.85 2.42 -7.22 -0.02 3.83 16 45 H 0.07 2.43 7.91 -2.39 -0.02 2.42 16 46 H 0.05 2.09 8.09 -2.38 -0.02 2.07 16 Total: -1.00 -82.39 380.03 3.26 -79.12 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.30 Total: 28.56 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 6.76 Total: 5.53 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -5.76 Total: -137.96 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.06 Total: -24.61 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.34 kcal Total: -82.39 3.26 -79.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567145773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.658 kcal (2) G-P(sol) polarization free energy of solvation -82.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds