Wall clock time and date at job start Sat Apr 11 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00331 * 2 1 4 4 H 1.48493 * 109.46933 * 269.99960 * 3 2 1 5 5 H 1.48501 * 109.47014 * 29.99940 * 3 2 1 6 6 H 1.48499 * 109.46901 * 149.99829 * 3 2 1 7 7 C 1.38812 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00381 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99663 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.47685 * 35.00328 * 10 9 7 12 12 C 1.53006 * 109.46784 * 155.00195 * 10 9 7 13 13 N 1.46498 * 109.46951 * 304.99575 * 12 10 9 14 14 C 1.34778 * 119.99785 * 179.97438 * 13 12 10 15 15 O 1.21594 * 120.00252 * 0.02562 * 14 13 12 16 16 C 1.47429 * 119.99828 * 179.97438 * 14 13 12 17 17 C 1.38045 * 126.41808 * 0.20100 * 16 14 13 18 18 N 1.34251 * 107.41995 * 180.25348 * 17 16 14 19 19 H 0.97005 * 125.75910 * 179.72575 * 18 17 16 20 20 N 1.39937 * 108.49274 * 359.73180 * 18 17 16 21 21 C 1.30445 * 108.89395 * 359.97438 * 20 18 17 22 22 C 1.50706 * 125.98789 * 180.02562 * 21 20 18 23 23 C 1.53000 * 117.49681 * 300.02659 * 22 21 20 24 24 C 1.53002 * 60.02940 * 107.47810 * 23 22 21 25 25 C 1.50700 * 109.47075 * 274.99622 * 10 9 7 26 26 C 1.38237 * 120.00301 * 319.73241 * 25 10 9 27 27 C 1.38234 * 119.99905 * 179.78921 * 26 25 10 28 28 C 1.38232 * 119.99887 * 0.43722 * 27 26 25 29 29 C 1.38228 * 120.00575 * 359.81393 * 28 27 26 30 30 C 1.38233 * 119.99682 * 140.00296 * 25 10 9 31 31 H 0.96999 * 120.00011 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00198 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.47072 * 184.99766 * 12 10 9 34 34 H 1.09001 * 109.47069 * 64.99887 * 12 10 9 35 35 H 0.96998 * 120.00460 * 0.02562 * 13 12 10 36 36 H 1.08007 * 126.28697 * 359.95842 * 17 16 14 37 37 H 1.08999 * 115.56047 * 154.34106 * 22 21 20 38 38 H 1.09002 * 117.49833 * 214.97915 * 23 22 21 39 39 H 1.09002 * 117.49953 * 359.97438 * 23 22 21 40 40 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 41 41 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 42 42 H 1.08001 * 119.99301 * 359.97438 * 26 25 10 43 43 H 1.08004 * 120.00034 * 180.27594 * 27 26 25 44 44 H 1.08006 * 119.99507 * 179.83698 * 28 27 26 45 45 H 1.07999 * 120.00851 * 180.02562 * 29 28 27 46 46 H 1.08003 * 120.00455 * 359.97438 * 30 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9686 -3.5507 0.5900 12 6 1.1806 -4.7522 0.6102 13 7 0.7341 -4.3355 1.9418 14 6 -0.0558 -5.1473 2.6722 15 8 -0.3975 -6.2257 2.2262 16 6 -0.5047 -4.7282 4.0125 17 6 -0.2010 -3.5387 4.6438 18 7 -0.8006 -3.5566 5.8449 19 1 -0.7588 -2.8516 6.5098 20 7 -1.4959 -4.7639 5.9759 21 6 -1.3301 -5.4669 4.8897 22 6 -1.9115 -6.8310 4.6202 23 6 -1.5263 -7.9639 5.5737 24 6 -2.9365 -7.3722 5.6199 25 6 2.4162 -4.0300 -1.4149 26 6 1.5054 -3.8275 -2.4348 27 6 1.8358 -4.1658 -3.7338 28 6 3.0736 -4.7149 -4.0114 29 6 3.9825 -4.9222 -2.9909 30 6 3.6537 -4.5800 -1.6924 31 1 -0.4850 0.8400 -0.0004 32 1 0.3554 -2.3881 -0.0002 33 1 1.7555 -5.6747 0.6919 34 1 0.3131 -4.9200 -0.0280 35 1 1.0062 -3.4751 2.2974 36 1 0.4110 -2.7423 4.2466 37 1 -2.0513 -7.0834 3.5691 38 1 -1.4128 -8.9617 5.1498 39 1 -0.8521 -7.7228 6.3955 40 1 -3.7508 -7.9808 5.2266 41 1 -3.1900 -6.7416 6.4720 42 1 0.5368 -3.4022 -2.2171 43 1 1.1258 -4.0034 -4.5313 44 1 3.3307 -4.9816 -5.0260 45 1 4.9498 -5.3509 -3.2078 46 1 4.3639 -4.7419 -0.8950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567664032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:02 Heat of formation + Delta-G solvation = 98.036148 kcal Electronic energy + Delta-G solvation = -28649.628259 eV Core-core repulsion = 24734.685743 eV Total energy + Delta-G solvation = -3914.942516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.41525 -39.17181 -38.48758 -37.05322 -35.82248 -33.54432 -32.08283 -31.41009 -30.41282 -30.34465 -29.57479 -27.32152 -24.13764 -23.92677 -23.14906 -22.42123 -22.21214 -21.86472 -20.02944 -19.80600 -19.27932 -18.38464 -17.34850 -16.50996 -16.04901 -15.63969 -15.41788 -15.25958 -14.92300 -14.69453 -14.56260 -14.20066 -14.13250 -13.74430 -13.31644 -13.14555 -12.87886 -12.77276 -12.76399 -12.29249 -11.99389 -11.89689 -11.56349 -11.17635 -11.13440 -10.99055 -10.95709 -10.85432 -10.72182 -10.46637 -10.38248 -10.18417 -9.84157 -9.51646 -9.30577 -9.11313 -8.84453 -8.49946 -8.39933 -8.18900 -7.16883 -5.90902 -3.22216 1.56661 1.86502 1.92923 2.12291 2.65966 3.33648 3.40123 3.41436 3.63639 3.70186 4.01680 4.30964 4.37670 4.46609 4.61281 4.95654 4.99919 5.07811 5.24459 5.32782 5.38516 5.42251 5.45033 5.50982 5.57083 5.62295 5.62717 5.67250 5.80425 5.82798 5.89294 6.04388 6.09941 6.11754 6.24968 6.29126 6.39841 6.44729 6.49532 6.63505 6.86221 6.94612 7.02694 7.06747 7.28352 7.51015 7.53122 7.59812 8.01763 8.25307 8.67462 9.38441 9.89036 10.25978 11.30212 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009309 B = 0.003412 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.247541 B = 8204.155172 C =10593.339765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.005 4.005 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.714 5.714 10 C 0.198 3.802 11 H 0.065 0.935 12 C 0.124 3.876 13 N -0.712 5.712 14 C 0.591 3.409 15 O -0.552 6.552 16 C -0.278 4.278 17 C 0.112 3.888 18 N -0.462 5.462 19 H 0.444 0.556 20 N -0.304 5.304 21 C 0.164 3.836 22 C -0.078 4.078 23 C -0.160 4.160 24 C -0.171 4.171 25 C -0.081 4.081 26 C -0.083 4.083 27 C -0.128 4.128 28 C -0.134 4.134 29 C -0.130 4.130 30 C -0.120 4.120 31 H 0.256 0.744 32 H 0.387 0.613 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.406 0.594 36 H 0.191 0.809 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -10.724 6.923 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.735 3.265 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.355 5.355 10 C 0.087 3.913 11 H 0.083 0.917 12 C -0.001 4.001 13 N -0.363 5.363 14 C 0.378 3.622 15 O -0.432 6.432 16 C -0.293 4.293 17 C -0.040 4.040 18 N -0.167 5.167 19 H 0.288 0.712 20 N -0.126 5.126 21 C -0.004 4.004 22 C -0.098 4.098 23 C -0.198 4.198 24 C -0.208 4.208 25 C -0.084 4.084 26 C -0.102 4.102 27 C -0.146 4.146 28 C -0.153 4.153 29 C -0.148 4.148 30 C -0.139 4.139 31 H 0.066 0.934 32 H 0.222 0.778 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.242 0.758 36 H 0.208 0.792 37 H 0.158 0.842 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.141 0.859 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.394 -11.257 7.775 13.687 hybrid contribution 0.865 2.179 -0.611 2.423 sum 1.260 -9.078 7.164 11.633 Atomic orbital electron populations 1.69658 1.05014 1.25819 1.57003 1.24706 0.95417 0.97555 1.02509 0.86253 0.78678 0.83927 0.77667 1.21697 1.21847 1.20736 1.19194 0.91011 0.83734 1.43438 0.91111 1.42471 1.05821 0.99231 1.87970 1.19496 0.95047 0.86559 0.90243 0.91709 1.21547 0.98560 0.97036 0.82937 1.45767 1.51105 1.21676 1.17781 1.17175 0.77877 0.83908 0.83195 1.90698 1.57699 1.22584 1.72177 1.20262 1.12549 0.97347 0.99175 1.23329 0.95827 0.98472 0.86421 1.46033 1.39248 1.16588 1.14786 0.71187 1.77037 1.19150 0.93755 1.22650 1.21401 0.94074 0.94960 0.89937 1.20525 1.03061 0.87583 0.98674 1.22942 0.98338 0.97264 1.01287 1.23017 0.92678 1.03535 1.01591 1.20967 0.93550 0.95726 0.98192 1.21006 1.00035 0.97111 0.92018 1.21106 0.96742 0.99924 0.96802 1.20977 0.94547 1.01228 0.98521 1.20983 0.99022 1.01530 0.93289 1.21012 0.96678 0.99875 0.96361 0.93405 0.77807 0.91505 0.91580 0.75756 0.79218 0.84231 0.88152 0.88928 0.88369 0.88230 0.85919 0.86877 0.87117 0.87019 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.56 13.06 55.49 0.72 -24.84 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 20.92 29.55 -169.99 -5.02 15.89 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.24 -5.98 9.92 -15.06 -0.15 -6.13 16 8 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 9 N -0.71 -15.40 3.81 -54.55 -0.21 -15.61 16 10 C 0.20 3.50 2.64 -69.08 -0.18 3.31 16 11 H 0.07 1.13 7.94 -51.93 -0.41 0.72 16 12 C 0.12 2.03 5.21 -4.04 -0.02 2.01 16 13 N -0.71 -11.28 5.38 -61.38 -0.33 -11.61 16 14 C 0.59 9.91 7.81 -12.52 -0.10 9.81 16 15 O -0.55 -10.55 15.00 5.28 0.08 -10.47 16 16 C -0.28 -4.15 6.13 -105.07 -0.64 -4.79 16 17 C 0.11 1.34 11.52 -16.56 -0.19 1.15 16 18 N -0.46 -5.05 7.29 30.85 0.22 -4.83 16 19 H 0.44 3.21 8.96 -182.72 -1.64 1.57 16 20 N -0.30 -4.15 12.22 33.90 0.41 -3.74 16 21 C 0.16 2.41 6.80 -82.02 -0.56 1.85 16 22 C -0.08 -1.05 5.65 -91.73 -0.52 -1.57 16 23 C -0.16 -1.77 10.23 -26.73 -0.27 -2.04 16 24 C -0.17 -1.85 10.14 -26.69 -0.27 -2.13 16 25 C -0.08 -1.42 4.92 -104.62 -0.51 -1.93 16 26 C -0.08 -1.51 9.32 -39.58 -0.37 -1.88 16 27 C -0.13 -2.04 10.05 -39.59 -0.40 -2.44 16 28 C -0.13 -1.96 10.05 -39.59 -0.40 -2.36 16 29 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 30 C -0.12 -1.89 9.67 -39.58 -0.38 -2.27 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.39 9.11 7.80 -40.82 -0.32 8.79 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.41 6.22 7.06 -40.82 -0.29 5.93 16 36 H 0.19 1.80 7.46 -52.48 -0.39 1.41 16 37 H 0.14 2.06 6.75 -51.93 -0.35 1.71 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 1.11 7.90 -51.93 -0.41 0.70 16 42 H 0.12 2.38 7.73 -52.49 -0.41 1.97 16 43 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 44 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 45 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 46 H 0.11 1.57 8.04 -52.48 -0.42 1.15 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -30.98 393.89 -11.21 -42.19 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -7.56 Total: 19.00 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -5.46 Total: -11.93 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.83 Total: -60.62 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.98 -11.21 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567664032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.224 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds