Wall clock time and date at job start Sat Apr 11 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00331 * 2 1 4 4 H 1.48493 * 109.46933 * 269.99960 * 3 2 1 5 5 H 1.48501 * 109.47014 * 29.99940 * 3 2 1 6 6 H 1.48499 * 109.46901 * 149.99829 * 3 2 1 7 7 C 1.38812 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00381 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99663 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.47685 * 35.00328 * 10 9 7 12 12 C 1.53006 * 109.46784 * 155.00195 * 10 9 7 13 13 N 1.46498 * 109.46951 * 304.99575 * 12 10 9 14 14 C 1.34778 * 119.99785 * 179.97438 * 13 12 10 15 15 O 1.21594 * 120.00252 * 0.02562 * 14 13 12 16 16 C 1.47429 * 119.99828 * 179.97438 * 14 13 12 17 17 C 1.38045 * 126.41808 * 0.20100 * 16 14 13 18 18 N 1.34251 * 107.41995 * 180.25348 * 17 16 14 19 19 H 0.97005 * 125.75910 * 179.72575 * 18 17 16 20 20 N 1.39937 * 108.49274 * 359.73180 * 18 17 16 21 21 C 1.30445 * 108.89395 * 359.97438 * 20 18 17 22 22 C 1.50706 * 125.98789 * 180.02562 * 21 20 18 23 23 C 1.53000 * 117.49681 * 300.02659 * 22 21 20 24 24 C 1.53002 * 60.02940 * 107.47810 * 23 22 21 25 25 C 1.50700 * 109.47075 * 274.99622 * 10 9 7 26 26 C 1.38237 * 120.00301 * 319.73241 * 25 10 9 27 27 C 1.38234 * 119.99905 * 179.78921 * 26 25 10 28 28 C 1.38232 * 119.99887 * 0.43722 * 27 26 25 29 29 C 1.38228 * 120.00575 * 359.81393 * 28 27 26 30 30 C 1.38233 * 119.99682 * 140.00296 * 25 10 9 31 31 H 0.96999 * 120.00011 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00198 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.47072 * 184.99766 * 12 10 9 34 34 H 1.09001 * 109.47069 * 64.99887 * 12 10 9 35 35 H 0.96998 * 120.00460 * 0.02562 * 13 12 10 36 36 H 1.08007 * 126.28697 * 359.95842 * 17 16 14 37 37 H 1.08999 * 115.56047 * 154.34106 * 22 21 20 38 38 H 1.09002 * 117.49833 * 214.97915 * 23 22 21 39 39 H 1.09002 * 117.49953 * 359.97438 * 23 22 21 40 40 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 41 41 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 42 42 H 1.08001 * 119.99301 * 359.97438 * 26 25 10 43 43 H 1.08004 * 120.00034 * 180.27594 * 27 26 25 44 44 H 1.08006 * 119.99507 * 179.83698 * 28 27 26 45 45 H 1.07999 * 120.00851 * 180.02562 * 29 28 27 46 46 H 1.08003 * 120.00455 * 359.97438 * 30 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9686 -3.5507 0.5900 12 6 1.1806 -4.7522 0.6102 13 7 0.7341 -4.3355 1.9418 14 6 -0.0558 -5.1473 2.6722 15 8 -0.3975 -6.2257 2.2262 16 6 -0.5047 -4.7282 4.0125 17 6 -0.2010 -3.5387 4.6438 18 7 -0.8006 -3.5566 5.8449 19 1 -0.7588 -2.8516 6.5098 20 7 -1.4959 -4.7639 5.9759 21 6 -1.3301 -5.4669 4.8897 22 6 -1.9115 -6.8310 4.6202 23 6 -1.5263 -7.9639 5.5737 24 6 -2.9365 -7.3722 5.6199 25 6 2.4162 -4.0300 -1.4149 26 6 1.5054 -3.8275 -2.4348 27 6 1.8358 -4.1658 -3.7338 28 6 3.0736 -4.7149 -4.0114 29 6 3.9825 -4.9222 -2.9909 30 6 3.6537 -4.5800 -1.6924 31 1 -0.4850 0.8400 -0.0004 32 1 0.3554 -2.3881 -0.0002 33 1 1.7555 -5.6747 0.6919 34 1 0.3131 -4.9200 -0.0280 35 1 1.0062 -3.4751 2.2974 36 1 0.4110 -2.7423 4.2466 37 1 -2.0513 -7.0834 3.5691 38 1 -1.4128 -8.9617 5.1498 39 1 -0.8521 -7.7228 6.3955 40 1 -3.7508 -7.9808 5.2266 41 1 -3.1900 -6.7416 6.4720 42 1 0.5368 -3.4022 -2.2171 43 1 1.1258 -4.0034 -4.5313 44 1 3.3307 -4.9816 -5.0260 45 1 4.9498 -5.3509 -3.2078 46 1 4.3639 -4.7419 -0.8950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567664032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:01 Heat of formation + Delta-G solvation = 79.533497 kcal Electronic energy + Delta-G solvation = -28650.430595 eV Core-core repulsion = 24734.685743 eV Total energy + Delta-G solvation = -3915.744851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.45510 -40.48926 -39.77131 -37.98933 -37.28887 -35.13247 -33.66490 -32.42557 -31.67045 -31.46679 -31.14781 -28.72496 -25.74264 -24.99837 -24.55718 -23.51919 -23.22546 -23.08419 -21.40266 -20.98532 -20.31803 -19.56571 -19.09532 -17.75982 -17.31675 -16.89080 -16.63464 -16.53177 -16.19338 -15.92178 -15.74666 -15.57536 -15.35236 -15.21560 -14.85556 -14.45506 -14.14073 -14.04778 -13.97960 -13.68874 -13.37663 -12.92273 -12.89831 -12.74750 -12.40742 -12.38777 -12.18463 -12.12425 -11.97971 -11.93327 -11.79741 -11.59322 -11.37305 -10.99589 -10.76897 -10.28498 -10.09183 -9.69308 -9.63756 -9.49272 -8.99620 -7.88586 -5.17751 0.53163 0.62018 0.67895 1.01636 1.49656 1.53096 1.58807 1.76214 2.36925 2.47139 2.59076 3.05652 3.05771 3.38414 3.46083 3.61859 3.84591 4.03471 4.05499 4.12239 4.17444 4.19751 4.23146 4.32131 4.41347 4.42399 4.43669 4.46988 4.68174 4.77429 4.77500 4.83089 4.90322 4.96225 5.08933 5.22097 5.26781 5.27861 5.33997 5.35652 5.55138 5.60182 5.72741 5.76615 5.97418 6.22899 6.28563 6.31836 6.47856 6.74383 7.37468 7.39690 8.07583 8.34826 9.33157 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009309 B = 0.003412 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.247541 B = 8204.155172 C =10593.339765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.060 4.060 3 Si 0.958 3.042 4 H -0.300 1.300 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.227 4.227 8 H 0.074 0.926 9 N -0.717 5.717 10 C 0.205 3.795 11 H 0.073 0.927 12 C 0.135 3.865 13 N -0.707 5.707 14 C 0.590 3.410 15 O -0.583 6.583 16 C -0.313 4.313 17 C 0.133 3.867 18 N -0.445 5.445 19 H 0.461 0.539 20 N -0.315 5.315 21 C 0.153 3.847 22 C -0.107 4.107 23 C -0.149 4.149 24 C -0.155 4.155 25 C -0.100 4.100 26 C -0.110 4.110 27 C -0.138 4.138 28 C -0.132 4.132 29 C -0.127 4.127 30 C -0.126 4.126 31 H 0.248 0.752 32 H 0.375 0.625 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.410 0.590 36 H 0.216 0.784 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.126 0.874 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.128 -11.248 7.258 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.253 4.253 3 Si 0.789 3.211 4 H -0.228 1.228 5 H -0.226 1.226 6 H -0.192 1.192 7 C -0.359 4.359 8 H 0.092 0.908 9 N -0.357 5.357 10 C 0.095 3.905 11 H 0.091 0.909 12 C 0.011 3.989 13 N -0.358 5.358 14 C 0.379 3.621 15 O -0.465 6.465 16 C -0.328 4.328 17 C -0.022 4.022 18 N -0.151 5.151 19 H 0.309 0.691 20 N -0.138 5.138 21 C -0.014 4.014 22 C -0.127 4.127 23 C -0.187 4.187 24 C -0.192 4.192 25 C -0.103 4.103 26 C -0.129 4.129 27 C -0.156 4.156 28 C -0.150 4.150 29 C -0.145 4.145 30 C -0.145 4.145 31 H 0.057 0.943 32 H 0.208 0.792 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.246 0.754 36 H 0.232 0.768 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.134 0.866 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.144 0.856 44 H 0.160 0.840 45 H 0.164 0.836 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.497 -11.792 8.143 14.547 hybrid contribution 0.278 2.260 -0.762 2.401 sum 2.775 -9.533 7.381 12.371 Atomic orbital electron populations 1.69798 1.06270 1.25656 1.59481 1.25290 0.95974 1.00129 1.03909 0.85368 0.78097 0.80777 0.76828 1.22818 1.22610 1.19230 1.19459 0.91199 0.84619 1.40600 0.90760 1.42494 1.05260 0.99973 1.87949 1.19549 0.94870 0.85125 0.90921 0.90870 1.21382 0.97669 0.97033 0.82865 1.45694 1.50989 1.21685 1.17410 1.17465 0.77376 0.83468 0.83830 1.90671 1.58839 1.23903 1.73050 1.20253 1.14547 0.99122 0.98892 1.23612 0.94703 0.97778 0.86074 1.46073 1.37931 1.16260 1.14850 0.69088 1.76989 1.19812 0.94575 1.22433 1.21619 0.94135 0.95550 0.90139 1.20484 1.05704 0.88195 0.98303 1.23009 0.98444 0.97034 1.00219 1.23073 0.92954 1.02865 1.00299 1.20881 0.94659 0.97413 0.97370 1.20953 0.99423 0.98908 0.93595 1.21337 0.98066 0.99966 0.96218 1.21376 0.93566 0.99763 1.00285 1.21412 1.00294 1.00244 0.92506 1.21290 0.95999 0.99308 0.97883 0.94305 0.79212 0.90469 0.93507 0.75359 0.76756 0.86278 0.86743 0.88955 0.86607 0.88381 0.88634 0.85584 0.83954 0.83614 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.13 13.06 21.65 0.28 -53.85 16 2 C -0.06 -3.13 5.50 84.86 0.47 -2.67 16 3 Si 0.96 43.04 29.55 68.60 2.03 45.07 16 4 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 5 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.23 -11.14 9.92 84.03 0.83 -10.30 16 8 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 9 N -0.72 -31.36 3.81 -326.49 -1.24 -32.60 16 10 C 0.20 7.23 2.64 44.25 0.12 7.35 16 11 H 0.07 2.47 7.94 -2.39 -0.02 2.45 16 12 C 0.14 4.52 5.21 86.38 0.45 4.97 16 13 N -0.71 -22.72 5.38 -466.37 -2.51 -25.23 16 14 C 0.59 20.28 7.81 86.66 0.68 20.96 16 15 O -0.58 -23.18 15.00 -4.01 -0.06 -23.24 16 16 C -0.31 -9.39 6.13 -20.15 -0.12 -9.51 16 17 C 0.13 3.02 11.52 84.28 0.97 3.99 16 18 N -0.45 -9.08 7.29 -56.32 -0.41 -9.49 16 19 H 0.46 5.74 8.96 -213.42 -1.91 3.82 16 20 N -0.32 -8.39 12.22 -46.67 -0.57 -8.96 16 21 C 0.15 4.51 6.80 43.52 0.30 4.81 16 22 C -0.11 -2.92 5.65 -11.51 -0.07 -2.98 16 23 C -0.15 -3.20 10.23 30.60 0.31 -2.89 16 24 C -0.15 -3.24 10.14 30.62 0.31 -2.93 16 25 C -0.10 -3.47 4.92 -19.87 -0.10 -3.57 16 26 C -0.11 -4.06 9.32 22.27 0.21 -3.85 16 27 C -0.14 -4.30 10.05 22.27 0.22 -4.08 16 28 C -0.13 -3.48 10.05 22.27 0.22 -3.25 16 29 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 30 C -0.13 -3.68 9.67 22.27 0.22 -3.46 16 31 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 32 H 0.38 18.27 7.80 -92.71 -0.72 17.55 16 33 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.41 12.51 7.06 -92.71 -0.65 11.85 16 36 H 0.22 3.68 7.46 -2.91 -0.02 3.66 16 37 H 0.12 3.72 6.75 -2.39 -0.02 3.70 16 38 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.10 2.10 7.90 -2.39 -0.02 2.08 16 42 H 0.10 3.95 7.73 -2.91 -0.02 3.93 16 43 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 44 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 45 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 46 H 0.14 3.29 8.04 -2.91 -0.02 3.27 16 Total: -1.00 -67.89 393.89 0.51 -67.38 By element: Atomic # 1 Polarization: 53.61 SS G_CDS: -2.25 Total: 51.35 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.24 Total: -10.43 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -4.45 Total: -130.13 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.06 Total: -23.24 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -67.89 0.51 -67.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567664032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.915 kcal (2) G-P(sol) polarization free energy of solvation -67.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds