Wall clock time and date at job start Sat Apr 11 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99469 * 2 1 4 4 H 1.48494 * 109.47162 * 269.99564 * 3 2 1 5 5 H 1.48503 * 109.47206 * 29.99916 * 3 2 1 6 6 H 1.48501 * 109.46868 * 150.00052 * 3 2 1 7 7 C 1.38808 * 120.00602 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99908 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00261 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00385 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47447 * 180.02562 * 10 9 7 12 12 C 1.53785 * 113.61235 * 175.00366 * 11 10 9 13 13 C 1.53784 * 87.08103 * 139.98582 * 12 11 10 14 14 N 1.46499 * 113.61758 * 89.11402 * 13 12 11 15 15 C 1.34777 * 119.99665 * 156.80808 * 14 13 12 16 16 O 1.21573 * 120.00276 * 359.72080 * 15 14 13 17 17 C 1.47658 * 119.99714 * 179.72385 * 15 14 13 18 18 C 1.39707 * 120.07911 * 359.72160 * 17 15 14 19 19 C 1.37726 * 119.91830 * 179.76567 * 18 17 15 20 20 C 1.39039 * 120.08128 * 0.51301 * 19 18 17 21 21 N 1.39860 * 119.92138 * 179.72186 * 20 19 18 22 22 C 1.37157 * 126.48850 * 359.72815 * 21 20 19 23 23 C 1.34624 * 106.83406 * 179.88120 * 22 21 20 24 24 N 1.34159 * 108.21230 * 0.38683 * 23 22 21 25 25 C 1.30486 * 109.36322 * 359.75531 * 24 23 22 26 26 C 1.39048 * 120.15759 * 359.73654 * 20 19 18 27 27 C 1.37722 * 120.07784 * 0.02562 * 26 20 19 28 28 C 1.53790 * 87.17067 * 334.52461 * 13 12 11 29 29 H 0.96998 * 120.00468 * 359.97438 * 1 2 3 30 30 H 0.97007 * 120.00191 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.46429 * 60.00194 * 10 9 7 32 32 H 1.08997 * 109.47165 * 300.00582 * 10 9 7 33 33 H 1.09004 * 112.84734 * 43.80616 * 11 10 9 34 34 H 1.08994 * 113.61920 * 25.43364 * 12 11 10 35 35 H 1.09000 * 113.60993 * 254.52633 * 12 11 10 36 36 H 1.09000 * 113.61503 * 219.93823 * 13 12 11 37 37 H 0.97001 * 119.99790 * 336.52521 * 14 13 12 38 38 H 1.08001 * 120.04278 * 0.02562 * 18 17 15 39 39 H 1.07999 * 119.96002 * 180.27112 * 19 18 17 40 40 H 1.08004 * 126.58164 * 0.02562 * 22 21 20 41 41 H 1.07998 * 125.89500 * 180.11353 * 23 22 21 42 42 H 1.08004 * 125.71412 * 179.97438 * 25 24 23 43 43 H 1.07994 * 119.95845 * 180.02562 * 26 20 19 44 44 H 1.08005 * 120.03847 * 179.97438 * 27 26 20 45 45 H 1.08991 * 113.61523 * 140.03114 * 28 13 12 46 46 H 1.09003 * 113.60928 * 270.93052 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 1.4705 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1124 -2.4706 0.0011 11 6 5.6165 -2.1909 0.0009 12 6 6.4787 -3.4583 0.1247 13 6 7.4244 -2.8208 -0.9069 14 7 8.4711 -1.9888 -0.3082 15 6 9.6135 -1.7536 -0.9834 16 8 9.7776 -2.2360 -2.0872 17 6 10.6659 -0.9100 -0.3826 18 6 10.4768 -0.3501 0.8833 19 6 11.4626 0.4322 1.4427 20 6 12.6406 0.6738 0.7447 21 7 13.6370 1.4736 1.3135 22 6 13.5902 2.0860 2.5398 23 6 14.7524 2.7489 2.6892 24 7 15.4892 2.5576 1.5844 25 6 14.8326 1.7958 0.7530 26 6 12.8301 0.1225 -0.5176 27 6 11.8507 -0.6649 -1.0811 28 6 6.2121 -2.0188 -1.4094 29 1 -0.4851 0.8400 0.0004 30 1 3.8647 -0.3618 -0.0004 31 1 3.8487 -3.0431 -0.8882 32 1 3.8494 -3.0412 0.8918 33 1 5.9001 -1.4002 0.6955 34 1 5.9838 -4.3601 -0.2354 35 1 6.9288 -3.5856 1.1093 36 1 7.8133 -3.5287 -1.6388 37 1 8.3401 -1.6038 0.5725 38 1 9.5603 -0.5340 1.4244 39 1 11.3189 0.8618 2.4231 40 1 12.7780 2.0428 3.2504 41 1 15.0401 3.3370 3.5480 42 1 15.1807 1.4755 -0.2179 43 1 13.7465 0.3119 -1.0568 44 1 11.9985 -1.0925 -2.0619 45 1 6.4470 -0.9851 -1.6626 46 1 5.6443 -2.5280 -2.1882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570568490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:27 Heat of formation + Delta-G solvation = 98.779367 kcal Electronic energy + Delta-G solvation = -27478.202665 eV Core-core repulsion = 23563.292377 eV Total energy + Delta-G solvation = -3914.910288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.86996 -40.78956 -39.48529 -38.21012 -34.84614 -34.67474 -33.40809 -31.93080 -31.22165 -30.34793 -29.76241 -27.30113 -25.68784 -24.98989 -23.93380 -23.16859 -22.09597 -21.45280 -21.11960 -20.84190 -19.49614 -19.15213 -18.16508 -17.55856 -16.42203 -16.06613 -15.83869 -15.54889 -15.27937 -15.26492 -14.74160 -14.61583 -14.36911 -14.33717 -14.23476 -13.97318 -13.85763 -13.57728 -13.25665 -13.06606 -12.70311 -12.52636 -12.38774 -11.89297 -11.78272 -11.48486 -11.19173 -10.93296 -10.73931 -10.64138 -10.34328 -10.27367 -10.23953 -9.95129 -9.80299 -9.61032 -9.33684 -9.21676 -8.91221 -8.85821 -7.24529 -5.79064 -3.14269 -0.09851 0.61256 1.52651 2.04821 2.45846 2.61571 2.77482 3.27751 3.33257 3.36703 3.42203 3.88353 3.99578 4.11617 4.21667 4.28050 4.46701 4.53498 4.55528 4.56146 4.59921 4.83397 4.89222 4.92153 4.95000 5.04934 5.23088 5.26962 5.42918 5.50361 5.55112 5.61073 5.67418 5.74540 5.78433 5.79262 5.88887 5.93859 6.03330 6.04130 6.15738 6.17750 6.45554 6.63699 6.63928 6.76557 7.18630 7.43102 7.87845 7.97506 8.40191 9.19502 9.91953 10.11951 11.39443 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.002078 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.977463 B =13470.177285 C =14992.593513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.166 3.834 11 C -0.119 4.119 12 C -0.135 4.135 13 C 0.115 3.885 14 N -0.704 5.704 15 C 0.561 3.439 16 O -0.533 6.533 17 C -0.139 4.139 18 C -0.056 4.056 19 C -0.139 4.139 20 C 0.158 3.842 21 N -0.414 5.414 22 C -0.052 4.052 23 C -0.021 4.021 24 N -0.484 5.484 25 C 0.192 3.808 26 C -0.142 4.142 27 C -0.030 4.030 28 C -0.141 4.141 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.029 0.971 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.400 0.600 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.180 0.820 41 H 0.177 0.823 42 H 0.211 0.789 43 H 0.140 0.860 44 H 0.149 0.851 45 H 0.067 0.933 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.542 -1.099 3.757 30.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.039 3.961 11 C -0.138 4.138 12 C -0.174 4.174 13 C 0.010 3.990 14 N -0.355 5.355 15 C 0.348 3.652 16 O -0.411 6.411 17 C -0.143 4.143 18 C -0.076 4.076 19 C -0.159 4.159 20 C 0.065 3.935 21 N -0.094 5.094 22 C -0.182 4.182 23 C -0.166 4.166 24 N -0.200 5.200 25 C -0.089 4.089 26 C -0.162 4.162 27 C -0.049 4.049 28 C -0.180 4.180 29 H 0.069 0.931 30 H 0.192 0.808 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.236 0.764 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.198 0.802 41 H 0.194 0.806 42 H 0.227 0.773 43 H 0.158 0.842 44 H 0.167 0.833 45 H 0.086 0.914 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 31.150 -1.236 2.832 31.303 hybrid contribution -0.466 1.254 0.721 1.519 sum 30.684 0.017 3.553 30.889 Atomic orbital electron populations 1.69700 1.05086 1.25803 1.57655 1.24686 0.95254 0.97214 1.02147 0.86527 0.79066 0.85001 0.77757 1.21101 1.21757 1.20506 1.19074 0.80735 0.94717 1.42858 0.89250 1.42694 1.03977 1.02262 1.91141 1.20618 0.87604 0.89261 0.98584 1.22877 0.96572 0.97290 0.97080 1.23295 0.96533 0.98662 0.98891 1.21987 0.86786 0.93417 0.96768 1.45614 1.16656 1.52073 1.21114 1.18088 0.81678 0.80366 0.85100 1.90797 1.79689 1.51056 1.19531 1.20074 0.96314 1.01976 0.95905 1.21221 0.98460 0.94082 0.93816 1.20794 0.92381 1.01639 1.01100 1.18028 0.88574 0.93315 0.93631 1.43257 1.14462 1.36492 1.15172 1.22859 1.03044 1.02953 0.89301 1.22431 0.91803 1.03881 0.98481 1.70359 1.30916 1.15952 1.02805 1.25379 0.82802 0.99649 1.01107 1.20814 1.01259 1.00301 0.93823 1.21159 0.90505 0.93518 0.99723 1.23509 0.95795 1.00951 0.97718 0.93068 0.80765 0.95268 0.95548 0.89628 0.88289 0.91099 0.87963 0.76432 0.84367 0.84363 0.80245 0.80633 0.77271 0.84241 0.83308 0.91417 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 21.97 27.74 -169.99 -4.71 17.26 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 7 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 9 N -0.76 -17.55 5.41 -59.91 -0.32 -17.87 16 10 C 0.17 3.02 6.10 -4.04 -0.02 3.00 16 11 C -0.12 -1.60 3.65 -89.67 -0.33 -1.92 16 12 C -0.14 -1.38 7.38 -25.92 -0.19 -1.57 16 13 C 0.12 1.25 4.29 -67.11 -0.29 0.96 16 14 N -0.70 -6.68 5.21 -54.01 -0.28 -6.96 16 15 C 0.56 6.09 7.77 -12.41 -0.10 6.00 16 16 O -0.53 -7.64 15.96 5.30 0.08 -7.56 16 17 C -0.14 -1.16 5.87 -104.95 -0.62 -1.78 16 18 C -0.06 -0.36 9.53 -39.22 -0.37 -0.73 16 19 C -0.14 -0.84 9.45 -39.47 -0.37 -1.21 16 20 C 0.16 1.07 6.64 -83.60 -0.55 0.51 16 21 N -0.41 -2.98 2.98 -62.06 -0.19 -3.17 16 22 C -0.05 -0.35 10.85 -16.45 -0.18 -0.52 16 23 C -0.02 -0.16 11.85 -17.81 -0.21 -0.37 16 24 N -0.48 -4.63 11.24 -14.46 -0.16 -4.79 16 25 C 0.19 1.43 11.91 -89.59 -1.07 0.36 16 26 C -0.14 -0.87 9.45 -39.47 -0.37 -1.24 16 27 C -0.03 -0.22 9.58 -39.22 -0.38 -0.60 16 28 C -0.14 -1.83 7.45 -25.77 -0.19 -2.02 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 30 H 0.36 8.15 5.53 -40.82 -0.23 7.93 16 31 H 0.03 0.54 7.85 -51.93 -0.41 0.14 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 1.19 7.50 -51.93 -0.39 0.80 16 37 H 0.40 2.87 6.73 -40.82 -0.27 2.59 16 38 H 0.14 0.59 6.39 -52.49 -0.34 0.26 16 39 H 0.14 0.56 6.79 -52.49 -0.36 0.21 16 40 H 0.18 0.67 7.13 -52.48 -0.37 0.29 16 41 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.21 0.83 7.05 -52.48 -0.37 0.46 16 43 H 0.14 0.51 6.75 -52.49 -0.35 0.16 16 44 H 0.15 1.08 7.64 -52.48 -0.40 0.68 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.10 1.27 7.90 -51.93 -0.41 0.86 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -36.53 383.34 -10.55 -47.08 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.02 Total: 6.95 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -5.50 Total: -8.19 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -0.18 Total: -61.32 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.08 Total: -7.56 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.53 -10.55 -47.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570568490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.862 kcal (2) G-P(sol) polarization free energy of solvation -36.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds