Wall clock time and date at job start Sat Apr 11 2020 06:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99469 * 2 1 4 4 H 1.48494 * 109.47162 * 269.99564 * 3 2 1 5 5 H 1.48503 * 109.47206 * 29.99916 * 3 2 1 6 6 H 1.48501 * 109.46868 * 150.00052 * 3 2 1 7 7 C 1.38808 * 120.00602 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99908 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00261 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00385 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47447 * 180.02562 * 10 9 7 12 12 C 1.53785 * 113.61235 * 175.00366 * 11 10 9 13 13 C 1.53784 * 87.08103 * 139.98582 * 12 11 10 14 14 N 1.46499 * 113.61758 * 89.11402 * 13 12 11 15 15 C 1.34777 * 119.99665 * 156.80808 * 14 13 12 16 16 O 1.21573 * 120.00276 * 359.72080 * 15 14 13 17 17 C 1.47658 * 119.99714 * 179.72385 * 15 14 13 18 18 C 1.39707 * 120.07911 * 359.72160 * 17 15 14 19 19 C 1.37726 * 119.91830 * 179.76567 * 18 17 15 20 20 C 1.39039 * 120.08128 * 0.51301 * 19 18 17 21 21 N 1.39860 * 119.92138 * 179.72186 * 20 19 18 22 22 C 1.37157 * 126.48850 * 359.72815 * 21 20 19 23 23 C 1.34624 * 106.83406 * 179.88120 * 22 21 20 24 24 N 1.34159 * 108.21230 * 0.38683 * 23 22 21 25 25 C 1.30486 * 109.36322 * 359.75531 * 24 23 22 26 26 C 1.39048 * 120.15759 * 359.73654 * 20 19 18 27 27 C 1.37722 * 120.07784 * 0.02562 * 26 20 19 28 28 C 1.53790 * 87.17067 * 334.52461 * 13 12 11 29 29 H 0.96998 * 120.00468 * 359.97438 * 1 2 3 30 30 H 0.97007 * 120.00191 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.46429 * 60.00194 * 10 9 7 32 32 H 1.08997 * 109.47165 * 300.00582 * 10 9 7 33 33 H 1.09004 * 112.84734 * 43.80616 * 11 10 9 34 34 H 1.08994 * 113.61920 * 25.43364 * 12 11 10 35 35 H 1.09000 * 113.60993 * 254.52633 * 12 11 10 36 36 H 1.09000 * 113.61503 * 219.93823 * 13 12 11 37 37 H 0.97001 * 119.99790 * 336.52521 * 14 13 12 38 38 H 1.08001 * 120.04278 * 0.02562 * 18 17 15 39 39 H 1.07999 * 119.96002 * 180.27112 * 19 18 17 40 40 H 1.08004 * 126.58164 * 0.02562 * 22 21 20 41 41 H 1.07998 * 125.89500 * 180.11353 * 23 22 21 42 42 H 1.08004 * 125.71412 * 179.97438 * 25 24 23 43 43 H 1.07994 * 119.95845 * 180.02562 * 26 20 19 44 44 H 1.08005 * 120.03847 * 179.97438 * 27 26 20 45 45 H 1.08991 * 113.61523 * 140.03114 * 28 13 12 46 46 H 1.09003 * 113.60928 * 270.93052 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 1.4705 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1124 -2.4706 0.0011 11 6 5.6165 -2.1909 0.0009 12 6 6.4787 -3.4583 0.1247 13 6 7.4244 -2.8208 -0.9069 14 7 8.4711 -1.9888 -0.3082 15 6 9.6135 -1.7536 -0.9834 16 8 9.7776 -2.2360 -2.0872 17 6 10.6659 -0.9100 -0.3826 18 6 10.4768 -0.3501 0.8833 19 6 11.4626 0.4322 1.4427 20 6 12.6406 0.6738 0.7447 21 7 13.6370 1.4736 1.3135 22 6 13.5902 2.0860 2.5398 23 6 14.7524 2.7489 2.6892 24 7 15.4892 2.5576 1.5844 25 6 14.8326 1.7958 0.7530 26 6 12.8301 0.1225 -0.5176 27 6 11.8507 -0.6649 -1.0811 28 6 6.2121 -2.0188 -1.4094 29 1 -0.4851 0.8400 0.0004 30 1 3.8647 -0.3618 -0.0004 31 1 3.8487 -3.0431 -0.8882 32 1 3.8494 -3.0412 0.8918 33 1 5.9001 -1.4002 0.6955 34 1 5.9838 -4.3601 -0.2354 35 1 6.9288 -3.5856 1.1093 36 1 7.8133 -3.5287 -1.6388 37 1 8.3401 -1.6038 0.5725 38 1 9.5603 -0.5340 1.4244 39 1 11.3189 0.8618 2.4231 40 1 12.7780 2.0428 3.2504 41 1 15.0401 3.3370 3.5480 42 1 15.1807 1.4755 -0.2179 43 1 13.7465 0.3119 -1.0568 44 1 11.9985 -1.0925 -2.0619 45 1 6.4470 -0.9851 -1.6626 46 1 5.6443 -2.5280 -2.1882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570568490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:26 Heat of formation + Delta-G solvation = 76.093568 kcal Electronic energy + Delta-G solvation = -27479.186395 eV Core-core repulsion = 23563.292377 eV Total energy + Delta-G solvation = -3915.894018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.36285 -41.56557 -40.21552 -39.06242 -36.49756 -35.30904 -34.48232 -33.22490 -32.37106 -30.92365 -30.30801 -28.77789 -26.63252 -25.74831 -24.78405 -24.27636 -23.03609 -22.67902 -21.64730 -21.45402 -20.51791 -19.75534 -19.45853 -18.82662 -17.23347 -16.69453 -16.58147 -16.41570 -16.20070 -16.02593 -15.98877 -15.83376 -15.31731 -15.07203 -15.00157 -14.73190 -14.58247 -14.50239 -14.40798 -13.92661 -13.86328 -13.57537 -13.49037 -13.35124 -13.00363 -12.73830 -12.24597 -12.17077 -11.87941 -11.76920 -11.72517 -11.41331 -11.22979 -11.18377 -11.09266 -10.89912 -10.25172 -10.13720 -9.78928 -9.38040 -9.27165 -8.02837 -5.35746 -0.63362 0.16453 0.99677 1.35873 1.41028 1.48125 1.57751 1.81252 2.02839 2.07416 2.48121 2.70901 3.28282 3.44720 3.47299 3.53674 3.59869 3.62347 3.71381 3.85967 3.87336 3.93607 4.05173 4.10618 4.12562 4.42502 4.47974 4.53669 4.57298 4.72354 4.79935 4.82706 4.86271 4.87252 4.90584 4.99003 5.00561 5.12211 5.17115 5.25704 5.31669 5.33006 5.47577 5.64886 5.69018 5.76724 6.16632 6.21506 6.46142 6.92888 7.08871 7.12163 7.86246 8.04994 9.18809 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.002078 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.977463 B =13470.177285 C =14992.593513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.069 4.069 3 Si 0.958 3.042 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.246 1.246 7 C -0.235 4.235 8 H 0.054 0.946 9 N -0.757 5.757 10 C 0.161 3.839 11 C -0.115 4.115 12 C -0.117 4.117 13 C 0.125 3.875 14 N -0.694 5.694 15 C 0.559 3.441 16 O -0.576 6.576 17 C -0.155 4.155 18 C -0.051 4.051 19 C -0.138 4.138 20 C 0.152 3.848 21 N -0.418 5.418 22 C -0.050 4.050 23 C -0.044 4.044 24 N -0.522 5.522 25 C 0.184 3.816 26 C -0.139 4.139 27 C -0.039 4.039 28 C -0.147 4.147 29 H 0.257 0.743 30 H 0.366 0.634 31 H 0.023 0.977 32 H 0.026 0.974 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.414 0.586 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.209 0.791 41 H 0.190 0.810 42 H 0.236 0.764 43 H 0.161 0.839 44 H 0.143 0.857 45 H 0.058 0.942 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.842 -0.386 5.216 33.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.260 4.260 3 Si 0.785 3.215 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.171 1.171 7 C -0.366 4.366 8 H 0.072 0.928 9 N -0.403 5.403 10 C 0.035 3.965 11 C -0.133 4.133 12 C -0.155 4.155 13 C 0.019 3.981 14 N -0.345 5.345 15 C 0.348 3.652 16 O -0.457 6.457 17 C -0.159 4.159 18 C -0.070 4.070 19 C -0.158 4.158 20 C 0.058 3.942 21 N -0.097 5.097 22 C -0.179 4.179 23 C -0.188 4.188 24 N -0.240 5.240 25 C -0.097 4.097 26 C -0.159 4.159 27 C -0.059 4.059 28 C -0.185 4.185 29 H 0.066 0.934 30 H 0.199 0.801 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.252 0.748 38 H 0.179 0.821 39 H 0.179 0.821 40 H 0.225 0.775 41 H 0.207 0.793 42 H 0.252 0.748 43 H 0.178 0.822 44 H 0.161 0.839 45 H 0.077 0.923 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 33.496 -0.547 4.330 33.780 hybrid contribution -1.191 0.940 0.257 1.539 sum 32.306 0.393 4.587 32.632 Atomic orbital electron populations 1.69893 1.07212 1.26679 1.59819 1.25569 0.96186 1.01462 1.02768 0.85360 0.78801 0.79360 0.77949 1.20849 1.22291 1.17067 1.19070 0.83026 0.93389 1.41122 0.92761 1.42714 1.02286 1.04397 1.90886 1.20828 0.90460 0.87143 0.98054 1.22824 0.93203 0.99610 0.97682 1.23221 0.95026 0.97242 1.00007 1.21789 0.86447 0.92971 0.96874 1.45517 1.15910 1.51588 1.21515 1.18491 0.82196 0.79952 0.84560 1.90775 1.80571 1.52903 1.21468 1.19982 0.95979 1.02831 0.97080 1.21417 0.99358 0.93300 0.92897 1.21071 0.91727 1.01082 1.01896 1.18222 0.88812 0.93238 0.93903 1.43355 1.14445 1.36493 1.15391 1.23336 1.03349 1.01891 0.89371 1.22822 0.92401 1.04814 0.98780 1.70331 1.32297 1.17323 1.04004 1.25918 0.82836 0.99137 1.01797 1.20991 1.01630 0.99451 0.93826 1.21200 0.90853 0.94059 0.99744 1.23526 0.96950 1.00702 0.97357 0.93389 0.80129 0.95902 0.95598 0.88492 0.87724 0.88597 0.88732 0.74793 0.82128 0.82101 0.77451 0.79254 0.74843 0.82189 0.83883 0.92329 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.25 13.97 21.65 0.30 -62.95 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.96 44.89 27.74 68.60 1.90 46.79 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.25 -10.10 6.52 99.48 0.65 -9.45 16 7 C -0.23 -13.36 10.47 84.03 0.88 -12.48 16 8 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 9 N -0.76 -34.28 5.41 -343.46 -1.86 -36.13 16 10 C 0.16 5.64 6.10 86.38 0.53 6.17 16 11 C -0.11 -2.77 3.65 -10.18 -0.04 -2.80 16 12 C -0.12 -2.01 7.38 31.12 0.23 -1.78 16 13 C 0.12 2.43 4.29 45.52 0.20 2.63 16 14 N -0.69 -11.40 5.21 -443.07 -2.31 -13.71 16 15 C 0.56 11.35 7.77 86.73 0.67 12.02 16 16 O -0.58 -16.37 15.96 -3.95 -0.06 -16.44 16 17 C -0.16 -2.30 5.87 -20.08 -0.12 -2.41 16 18 C -0.05 -0.48 9.53 22.50 0.21 -0.26 16 19 C -0.14 -1.18 9.45 22.34 0.21 -0.97 16 20 C 0.15 1.64 6.64 38.25 0.25 1.90 16 21 N -0.42 -5.02 2.98 -350.26 -1.04 -6.07 16 22 C -0.05 -0.54 10.85 83.03 0.90 0.36 16 23 C -0.04 -0.62 11.85 83.51 0.99 0.37 16 24 N -0.52 -9.49 11.24 -199.67 -2.25 -11.73 16 25 C 0.18 2.44 11.91 179.99 2.14 4.58 16 26 C -0.14 -1.42 9.45 22.34 0.21 -1.21 16 27 C -0.04 -0.54 9.58 22.50 0.22 -0.32 16 28 C -0.15 -3.56 7.45 31.22 0.23 -3.33 16 29 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.37 15.64 5.53 -92.70 -0.51 15.12 16 31 H 0.02 0.84 7.85 -2.39 -0.02 0.82 16 32 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.10 1.75 8.10 -2.39 -0.02 1.73 16 35 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 2.07 7.50 -2.39 -0.02 2.06 16 37 H 0.41 4.38 6.73 -92.71 -0.62 3.76 16 38 H 0.16 0.68 6.39 -2.91 -0.02 0.66 16 39 H 0.16 0.59 6.79 -2.91 -0.02 0.57 16 40 H 0.21 0.78 7.13 -2.91 -0.02 0.76 16 41 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.24 1.41 7.05 -2.91 -0.02 1.39 16 43 H 0.16 0.82 6.75 -2.91 -0.02 0.80 16 44 H 0.14 2.06 7.64 -2.91 -0.02 2.04 16 45 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.09 2.24 7.90 -2.39 -0.02 2.22 16 Total: -1.00 -81.39 383.34 2.71 -78.68 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.17 Total: 22.67 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 8.19 Total: -1.11 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -7.15 Total: -130.59 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.06 Total: -16.44 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Total: -81.39 2.71 -78.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570568490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.778 kcal (2) G-P(sol) polarization free energy of solvation -81.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds