Wall clock time and date at job start Sat Apr 11 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99599 * 2 1 4 4 H 1.48495 * 109.47097 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47111 * 300.00012 * 3 2 1 6 6 H 1.48507 * 109.47177 * 59.99609 * 3 2 1 7 7 C 1.38811 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99688 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99736 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47297 * 179.97438 * 10 9 7 12 12 C 1.53774 * 113.61676 * 185.00130 * 11 10 9 13 13 C 1.53775 * 87.08284 * 220.02029 * 12 11 10 14 14 N 1.46496 * 113.61579 * 139.97796 * 13 12 11 15 15 C 1.34786 * 120.00286 * 156.52892 * 14 13 12 16 16 O 1.21582 * 119.99197 * 0.02562 * 15 14 13 17 17 C 1.47594 * 120.00347 * 180.02562 * 15 14 13 18 18 C 1.39640 * 120.18882 * 54.34081 * 17 15 14 19 19 C 1.37848 * 119.91680 * 179.97438 * 18 17 15 20 20 C 1.38519 * 120.31207 * 0.02885 * 19 18 17 21 21 C 1.38082 * 120.38467 * 359.94841 * 20 19 18 22 22 C 1.38748 * 120.07662 * 0.04804 * 21 20 19 23 23 N 1.39706 * 120.15564 * 180.24786 * 22 21 20 24 24 C 1.35861 * 126.10186 * 5.83936 * 23 22 21 25 25 C 1.35282 * 107.61218 * 179.87006 * 24 23 22 26 26 C 1.39967 * 107.96815 * 0.39011 * 25 24 23 27 27 N 1.30824 * 108.36924 * 359.75379 * 26 25 24 28 28 C 1.53788 * 87.17353 * 25.39024 * 13 12 11 29 29 H 0.96997 * 120.00585 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99986 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.46604 * 60.00001 * 10 9 7 32 32 H 1.08996 * 109.47514 * 300.00204 * 10 9 7 33 33 H 1.09004 * 112.84816 * 316.20124 * 11 10 9 34 34 H 1.09000 * 113.61460 * 105.47078 * 12 11 10 35 35 H 1.08998 * 113.69271 * 334.58057 * 12 11 10 36 36 H 1.09003 * 113.61656 * 270.80075 * 13 12 11 37 37 H 0.96999 * 119.99975 * 336.53797 * 14 13 12 38 38 H 1.08007 * 120.04232 * 0.02562 * 18 17 15 39 39 H 1.08007 * 119.84232 * 180.02562 * 19 18 17 40 40 H 1.07993 * 119.80725 * 179.97438 * 20 19 18 41 41 H 1.08005 * 119.96419 * 180.02562 * 21 20 19 42 42 H 1.07994 * 126.19122 * 359.97438 * 24 23 22 43 43 H 1.07998 * 126.01320 * 180.18626 * 25 24 23 44 44 H 1.07996 * 125.80897 * 179.75603 * 26 25 24 45 45 H 1.08994 * 113.61084 * 89.15456 * 28 13 12 46 46 H 1.08997 * 113.61523 * 220.05712 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 6 1.0642 -4.8197 0.0012 12 6 1.7309 -6.2000 0.1241 13 6 0.7050 -6.7000 -0.9066 14 7 1.2672 -7.6267 -1.8922 15 6 0.4626 -8.4951 -2.5364 16 8 -0.7299 -8.5091 -2.2998 17 6 1.0291 -9.4291 -3.5290 18 6 2.0878 -10.2694 -3.1782 19 6 2.6122 -11.1399 -4.1096 20 6 2.0944 -11.1853 -5.3935 21 6 1.0473 -10.3604 -5.7539 22 6 0.5072 -9.4781 -4.8293 23 7 -0.5556 -8.6465 -5.1906 24 6 -1.2281 -8.6738 -6.3708 25 6 -2.1812 -7.7150 -6.3211 26 6 -2.0859 -7.0754 -5.0798 27 7 -1.1143 -7.6315 -4.4029 28 6 0.6142 -5.2488 -1.4073 29 1 -0.4851 0.8400 -0.0004 30 1 0.3557 -2.3880 0.0005 31 1 2.6849 -3.7143 0.8906 32 1 2.6850 -3.7144 -0.8894 33 1 0.2383 -4.6702 0.6967 34 1 1.6173 -6.6536 1.1086 35 1 2.7592 -6.2233 -0.2367 36 1 -0.2194 -7.0665 -0.4602 37 1 2.2186 -7.6153 -2.0810 38 1 2.4947 -10.2379 -2.1782 39 1 3.4308 -11.7896 -3.8368 40 1 2.5118 -11.8701 -6.1168 41 1 0.6486 -10.4017 -6.7568 42 1 -1.0374 -9.3413 -7.1980 43 1 -2.8886 -7.4818 -7.1031 44 1 -2.7085 -6.2614 -4.7390 45 1 1.3366 -5.0103 -2.1879 46 1 -0.3995 -4.9357 -1.6572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570573112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:30 Heat of formation + Delta-G solvation = 123.180853 kcal Electronic energy + Delta-G solvation = -28559.160996 eV Core-core repulsion = 24645.308836 eV Total energy + Delta-G solvation = -3913.852160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72851 -40.13564 -39.12177 -37.80438 -34.48071 -33.84769 -33.19469 -31.73421 -30.71754 -30.26540 -29.29684 -26.76358 -25.40509 -24.64222 -23.80984 -23.13733 -21.79175 -20.89550 -20.80382 -20.28987 -19.43381 -18.53115 -17.45527 -16.99906 -16.24219 -15.74766 -15.63666 -15.41304 -15.16742 -15.01875 -14.47757 -14.31407 -14.22738 -13.89761 -13.69597 -13.32902 -13.08608 -12.99322 -12.92013 -12.85828 -12.37976 -12.18980 -11.84461 -11.71404 -11.51310 -11.12478 -10.83423 -10.71978 -10.63092 -10.50881 -10.26004 -10.02336 -9.88387 -9.73107 -9.55678 -9.47659 -9.31128 -8.83634 -8.73185 -8.34562 -6.84930 -5.71039 -2.99153 0.36920 0.66112 1.95050 2.16742 2.65821 2.80897 3.14036 3.42453 3.46289 3.51446 3.54021 4.08200 4.33791 4.49264 4.55813 4.59584 4.63185 4.77363 4.85231 4.91771 4.93673 5.03958 5.13465 5.24481 5.30159 5.39148 5.45339 5.62957 5.67662 5.77344 5.80537 5.84380 5.91026 5.93494 6.01440 6.13967 6.17853 6.20026 6.36249 6.43309 6.48229 6.51423 6.74531 6.85873 6.88835 7.00534 7.50612 7.59491 7.74724 8.35803 8.48120 9.59005 10.18973 10.53558 11.52048 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.002400 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.857855 B =11664.846027 C =12674.871854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.166 3.834 11 C -0.112 4.112 12 C -0.138 4.138 13 C 0.125 3.875 14 N -0.713 5.713 15 C 0.567 3.433 16 O -0.503 6.503 17 C -0.135 4.135 18 C -0.066 4.066 19 C -0.137 4.137 20 C -0.075 4.075 21 C -0.151 4.151 22 C 0.210 3.790 23 N -0.336 5.336 24 C 0.040 3.960 25 C -0.250 4.250 26 C 0.049 3.951 27 N -0.237 5.237 28 C -0.133 4.133 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.396 0.604 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.175 0.825 43 H 0.154 0.846 44 H 0.189 0.811 45 H 0.080 0.920 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.957 -27.462 -13.417 30.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.038 3.962 11 C -0.131 4.131 12 C -0.176 4.176 13 C 0.021 3.979 14 N -0.363 5.363 15 C 0.352 3.648 16 O -0.377 6.377 17 C -0.141 4.141 18 C -0.085 4.085 19 C -0.156 4.156 20 C -0.093 4.093 21 C -0.172 4.172 22 C 0.115 3.885 23 N -0.112 5.112 24 C -0.100 4.100 25 C -0.279 4.279 26 C -0.140 4.140 27 N -0.054 5.054 28 C -0.172 4.172 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.230 0.770 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.193 0.807 43 H 0.171 0.829 44 H 0.206 0.794 45 H 0.099 0.901 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.882 -27.382 -12.135 30.089 hybrid contribution 0.062 1.004 -1.042 1.449 sum 2.944 -26.378 -13.177 29.633 Atomic orbital electron populations 1.69672 1.05084 1.25442 1.58015 1.24744 0.95524 0.97660 1.03256 0.86129 0.78747 0.84242 0.77166 1.20611 1.21910 1.21896 1.19282 0.91012 0.84279 1.42260 0.91244 1.42367 1.05920 0.99978 1.89320 1.20591 0.92892 0.85190 0.97480 1.22570 0.99386 0.93791 0.97331 1.23335 0.98706 0.96809 0.98790 1.22587 0.97930 0.88283 0.89094 1.45908 1.10955 1.37240 1.42242 1.17742 0.86412 0.80165 0.80490 1.90795 1.14458 1.69195 1.63220 1.19778 0.99422 1.01713 0.93180 1.21219 0.93066 0.94015 1.00181 1.21144 1.01181 0.99884 0.93396 1.21103 0.94471 0.97158 0.96603 1.20773 0.99360 0.97861 0.99201 1.17414 0.87153 0.90926 0.93031 1.46065 1.25595 1.27306 1.12250 1.22699 0.95400 1.01486 0.90427 1.21648 1.04416 1.01406 1.00383 1.24275 0.97024 0.99778 0.92920 1.78078 1.12008 1.00118 1.15179 1.23410 1.02364 0.94110 0.97304 0.93609 0.78240 0.96429 0.96457 0.88939 0.91096 0.89819 0.87160 0.76966 0.84498 0.84806 0.84644 0.84751 0.80742 0.82858 0.79419 0.90095 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.98 13.06 55.49 0.72 -28.26 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -19.19 5.60 -59.91 -0.34 -19.52 16 10 C 0.17 3.42 6.10 -4.04 -0.02 3.40 16 11 C -0.11 -1.85 3.75 -89.72 -0.34 -2.19 16 12 C -0.14 -1.76 7.39 -25.93 -0.19 -1.95 16 13 C 0.13 1.73 4.21 -67.12 -0.28 1.45 16 14 N -0.71 -8.85 5.34 -54.04 -0.29 -9.14 16 15 C 0.57 8.09 5.92 -12.44 -0.07 8.02 16 16 O -0.50 -9.09 14.11 5.29 0.07 -9.02 16 17 C -0.14 -1.58 5.66 -104.82 -0.59 -2.17 16 18 C -0.07 -0.53 9.73 -39.20 -0.38 -0.91 16 19 C -0.14 -0.83 10.02 -39.62 -0.40 -1.23 16 20 C -0.07 -0.43 10.03 -39.53 -0.40 -0.83 16 21 C -0.15 -1.16 9.45 -39.45 -0.37 -1.53 16 22 C 0.21 2.39 6.68 -83.35 -0.56 1.84 16 23 N -0.34 -4.35 3.78 -10.37 -0.04 -4.39 16 24 C 0.04 0.39 10.81 -16.82 -0.18 0.21 16 25 C -0.25 -2.55 10.80 -39.99 -0.43 -2.98 16 26 C 0.05 0.63 12.02 -17.33 -0.21 0.43 16 27 N -0.24 -3.68 8.20 30.64 0.25 -3.43 16 28 C -0.13 -2.16 7.45 -25.82 -0.19 -2.35 16 29 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.36 7.85 -51.93 -0.41 -0.04 16 33 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 36 H 0.11 1.67 7.50 -51.93 -0.39 1.28 16 37 H 0.40 3.95 8.66 -40.82 -0.35 3.60 16 38 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 39 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 40 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 41 H 0.13 0.69 6.78 -52.48 -0.36 0.34 16 42 H 0.18 0.98 7.09 -52.49 -0.37 0.61 16 43 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.19 2.02 8.06 -52.49 -0.42 1.59 16 45 H 0.08 1.36 7.90 -51.93 -0.41 0.95 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -37.38 386.98 -10.04 -47.42 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.37 Total: 11.01 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -4.87 Total: -8.37 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: 0.31 Total: -64.74 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.02 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.38 -10.04 -47.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570573112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.605 kcal (2) G-P(sol) polarization free energy of solvation -37.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds