Wall clock time and date at job start Sat Apr 11 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00212 * 2 1 4 4 H 1.48497 * 109.47813 * 240.00107 * 3 2 1 5 5 H 1.48507 * 109.47136 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46993 * 120.00096 * 3 2 1 7 7 C 1.38813 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00038 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00219 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47182 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46764 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.47047 * 179.97438 * 12 11 10 14 14 C 1.46501 * 119.99559 * 278.61753 * 13 12 11 15 15 C 1.50699 * 109.46963 * 264.03950 * 14 13 12 16 16 C 1.38241 * 119.99974 * 264.27962 * 15 14 13 17 17 C 1.38239 * 119.99688 * 179.76551 * 16 15 14 18 18 C 1.38235 * 119.99795 * 0.51530 * 17 16 15 19 19 C 1.38228 * 120.00359 * 359.73753 * 18 17 16 20 20 C 1.38235 * 120.00159 * 0.02562 * 19 18 17 21 21 C 1.34774 * 120.00287 * 98.61214 * 13 12 11 22 22 O 1.21551 * 119.99954 * 186.29955 * 21 13 12 23 23 C 1.47838 * 119.99792 * 6.30843 * 21 13 12 24 24 C 1.39948 * 120.93615 * 150.29628 * 23 21 13 25 25 N 1.32145 * 118.91702 * 179.72614 * 24 23 21 26 26 C 1.31864 * 120.97592 * 0.25482 * 25 24 23 27 27 N 1.31876 * 122.08916 * 0.02562 * 26 25 24 28 28 C 1.32142 * 120.97000 * 359.97091 * 27 26 25 29 29 H 0.96999 * 119.99636 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00163 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47338 * 59.99609 * 10 9 7 32 32 H 1.09007 * 109.46848 * 299.99571 * 10 9 7 33 33 H 1.08995 * 109.47026 * 59.99574 * 11 10 9 34 34 H 1.08998 * 109.46750 * 299.99764 * 11 10 9 35 35 H 1.09002 * 109.47401 * 59.99714 * 12 11 10 36 36 H 1.08998 * 109.47440 * 299.99520 * 12 11 10 37 37 H 1.08999 * 109.47546 * 24.04638 * 14 13 12 38 38 H 1.09005 * 109.46887 * 144.04488 * 14 13 12 39 39 H 1.07997 * 120.00283 * 0.02562 * 16 15 14 40 40 H 1.07995 * 119.99609 * 180.22860 * 17 16 15 41 41 H 1.07998 * 119.99896 * 179.72707 * 18 17 16 42 42 H 1.07999 * 120.00341 * 179.97438 * 19 18 17 43 43 H 1.07995 * 120.00632 * 179.97438 * 20 19 18 44 44 H 1.07997 * 120.53971 * 0.02562 * 24 23 21 45 45 H 1.07997 * 118.95707 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.54002 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 6 1.8287 -6.1447 -0.0018 13 7 0.8766 -7.2583 -0.0018 14 6 0.2566 -7.6918 1.2527 15 6 1.0314 -8.8527 1.8210 16 6 0.6191 -10.1481 1.5700 17 6 1.3326 -11.2130 2.0874 18 6 2.4524 -10.9824 2.8645 19 6 2.8617 -9.6870 3.1198 20 6 2.1510 -8.6221 2.5985 21 6 0.5712 -7.8838 -1.1559 22 8 -0.3016 -8.7295 -1.1762 23 6 1.2977 -7.5413 -2.3970 24 6 1.4864 -8.4925 -3.4060 25 7 2.1371 -8.1416 -4.5014 26 6 2.6090 -6.9191 -4.6482 27 7 2.4584 -5.9939 -3.7206 28 6 1.8207 -6.2581 -2.5939 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.6847 -3.7146 0.8894 32 1 2.6846 -3.7146 -0.8906 33 1 0.4373 -4.7617 -0.8913 34 1 0.4367 -4.7621 0.8886 35 1 2.4553 -6.2029 0.8881 36 1 2.4553 -6.2021 -0.8918 37 1 0.2630 -6.8670 1.9653 38 1 -0.7716 -7.9996 1.0625 39 1 -0.2581 -10.3281 0.9663 40 1 1.0126 -12.2251 1.8882 41 1 3.0073 -11.8143 3.2723 42 1 3.7363 -9.5069 3.7273 43 1 2.4705 -7.6100 2.7982 44 1 1.1023 -9.4955 -3.2934 45 1 3.1361 -6.6677 -5.5567 46 1 1.7011 -5.4951 -1.8390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571337076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:34 Heat of formation + Delta-G solvation = 82.563122 kcal Electronic energy + Delta-G solvation = -28899.144133 eV Core-core repulsion = 24983.530657 eV Total energy + Delta-G solvation = -3915.613477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.66041 -40.08483 -38.95698 -36.98977 -34.93578 -34.05280 -33.25144 -32.18736 -31.35643 -31.08475 -29.69982 -27.04206 -25.81255 -24.75461 -24.60991 -23.03917 -22.62945 -21.82573 -21.18409 -19.92187 -18.44278 -17.87963 -17.31673 -17.21727 -16.95394 -16.14021 -15.75772 -15.29727 -15.22116 -15.16486 -14.79572 -14.58473 -14.12452 -13.88536 -13.61597 -13.42147 -13.36092 -13.26214 -13.15462 -12.74573 -12.37242 -12.17804 -11.96766 -11.84692 -11.45689 -11.19220 -11.15411 -11.05906 -10.86681 -10.82378 -10.65539 -10.22572 -10.13962 -9.82121 -9.77422 -9.48109 -9.11180 -9.05121 -8.92339 -8.89204 -6.99154 -5.80469 -3.10274 0.24299 0.78892 1.05429 1.21560 2.50887 2.69726 3.42373 3.46884 3.47793 3.52274 3.64394 3.84792 3.93590 4.12143 4.24011 4.53197 4.56546 4.60959 4.68775 4.72292 4.80688 4.91155 4.99221 5.04480 5.12180 5.26235 5.30119 5.43826 5.45533 5.47789 5.51366 5.67118 5.70111 5.78008 5.86229 6.01284 6.06214 6.18771 6.20780 6.25629 6.31154 6.39934 6.60251 6.64348 6.66498 6.79515 7.05624 7.65877 7.76456 7.83023 8.37685 9.49166 10.04588 10.38753 11.42169 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009356 B = 0.003137 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.037404 B = 8924.862157 C =11028.128275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.153 3.847 11 C -0.155 4.155 12 C 0.080 3.920 13 N -0.595 5.595 14 C 0.155 3.845 15 C -0.107 4.107 16 C -0.095 4.095 17 C -0.126 4.126 18 C -0.118 4.118 19 C -0.125 4.125 20 C -0.104 4.104 21 C 0.574 3.426 22 O -0.528 6.528 23 C -0.244 4.244 24 C 0.203 3.797 25 N -0.525 5.525 26 C 0.310 3.690 27 N -0.513 5.513 28 C 0.158 3.842 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.176 0.824 45 H 0.202 0.798 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.450 -22.947 1.290 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.025 3.975 11 C -0.194 4.194 12 C -0.043 4.043 13 N -0.325 5.325 14 C 0.033 3.967 15 C -0.108 4.108 16 C -0.113 4.113 17 C -0.144 4.144 18 C -0.136 4.136 19 C -0.143 4.143 20 C -0.122 4.122 21 C 0.361 3.639 22 O -0.405 6.405 23 C -0.252 4.252 24 C 0.036 3.964 25 N -0.238 5.238 26 C 0.023 3.977 27 N -0.226 5.226 28 C -0.008 4.008 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.193 0.807 45 H 0.218 0.782 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.595 -23.015 0.423 23.473 hybrid contribution -0.177 0.802 0.774 1.128 sum 4.418 -22.214 1.197 22.680 Atomic orbital electron populations 1.69646 1.05148 1.25884 1.57438 1.24748 0.95523 0.97761 1.02771 0.86259 0.78539 0.83434 0.77898 1.21160 1.21677 1.21232 1.19164 0.91028 0.84033 1.43160 0.91121 1.42298 1.05851 0.99825 1.89619 1.20598 0.93181 0.85381 0.98372 1.22303 1.00030 0.93491 1.03582 1.22472 0.91740 0.85347 1.04774 1.47829 1.44726 1.33369 1.06615 1.20418 0.96665 0.95087 0.84548 1.20222 0.96959 0.95035 0.98620 1.21223 0.99874 0.91928 0.98295 1.21173 0.95889 0.99010 0.98308 1.21180 0.96946 0.96938 0.98578 1.21143 1.00020 0.92750 1.00401 1.21119 0.94736 0.99292 0.97062 1.17815 0.82338 0.81155 0.82571 1.90764 1.31010 1.33196 1.85569 1.21773 1.06083 0.98397 0.98938 1.23380 0.87724 0.99391 0.85872 1.68549 1.11557 1.20506 1.23231 1.25354 0.90991 0.84045 0.97276 1.68668 1.16210 1.35689 1.02005 1.25006 0.86483 0.95324 0.93970 0.93395 0.78214 0.95875 0.95974 0.91141 0.90203 0.89436 0.88547 0.88598 0.88769 0.85449 0.86166 0.86282 0.86068 0.85890 0.80655 0.78185 0.77866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.63 5.60 -59.90 -0.34 -17.96 16 10 C 0.15 2.72 6.18 -4.04 -0.02 2.70 16 11 C -0.16 -2.11 4.68 -26.73 -0.13 -2.23 16 12 C 0.08 0.85 4.84 -4.04 -0.02 0.83 16 13 N -0.59 -6.61 2.48 -176.18 -0.44 -7.04 16 14 C 0.15 1.57 5.54 -5.19 -0.03 1.54 16 15 C -0.11 -1.09 5.41 -104.62 -0.57 -1.66 16 16 C -0.09 -0.98 9.68 -39.58 -0.38 -1.36 16 17 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 18 C -0.12 -1.02 10.05 -39.59 -0.40 -1.41 16 19 C -0.13 -1.10 10.05 -39.59 -0.40 -1.50 16 20 C -0.10 -0.98 9.72 -39.58 -0.38 -1.36 16 21 C 0.57 7.32 7.44 -12.33 -0.09 7.23 16 22 O -0.53 -7.73 16.24 5.32 0.09 -7.64 16 23 C -0.24 -3.00 5.61 -104.69 -0.59 -3.58 16 24 C 0.20 2.34 10.90 -16.78 -0.18 2.15 16 25 N -0.53 -6.12 10.42 -14.25 -0.15 -6.27 16 26 C 0.31 3.46 12.27 -92.02 -1.13 2.34 16 27 N -0.51 -6.78 10.42 -14.25 -0.15 -6.93 16 28 C 0.16 2.02 8.80 -16.78 -0.15 1.87 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.38 9.80 7.67 -40.82 -0.31 9.49 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.40 7.82 -51.93 -0.41 -0.01 16 33 H 0.07 1.02 7.11 -51.93 -0.37 0.65 16 34 H 0.08 1.09 8.03 -51.93 -0.42 0.67 16 35 H 0.09 0.82 8.03 -51.93 -0.42 0.40 16 36 H 0.10 1.05 4.00 -51.95 -0.21 0.84 16 37 H 0.10 0.85 7.89 -51.93 -0.41 0.44 16 38 H 0.09 1.01 7.43 -51.93 -0.39 0.62 16 39 H 0.13 1.35 7.86 -52.49 -0.41 0.94 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.12 1.01 7.95 -52.49 -0.42 0.59 16 44 H 0.18 1.71 7.99 -52.49 -0.42 1.29 16 45 H 0.20 1.53 8.06 -52.49 -0.42 1.10 16 46 H 0.21 2.63 2.33 -52.49 -0.12 2.50 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -33.00 386.41 -10.53 -43.53 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -5.96 Total: 9.71 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -5.11 Total: -3.19 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: -0.35 Total: -65.25 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.09 Total: -7.64 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.00 -10.53 -43.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571337076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.090 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds